Wall clock time and date at job start Tue Mar 31 2020 22:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47578 * 2 1 4 4 C 1.53001 * 109.47023 * 120.00082 * 2 1 3 5 5 H 1.08999 * 109.47690 * 185.77209 * 4 2 1 6 6 N 1.46505 * 109.47372 * 65.76756 * 4 2 1 7 7 C 1.34772 * 119.99991 * 155.00036 * 6 4 2 8 8 O 1.21582 * 120.00332 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99982 * 180.02562 * 7 6 4 10 10 C 1.39278 * 119.99969 * 185.17579 * 9 7 6 11 11 C 1.39461 * 119.83821 * 27.17145 * 10 9 7 12 12 C 1.36377 * 120.18028 * 179.71524 * 11 10 9 13 13 C 1.40891 * 119.84478 * 0.57977 * 12 11 10 14 14 C 1.41156 * 120.15901 * 179.72006 * 13 12 11 15 15 H 1.07999 * 119.99773 * 29.47512 * 14 13 12 16 16 C 1.39888 * 119.99876 * 209.47479 * 14 13 12 17 17 N 1.30877 * 120.00300 * 9.37488 * 16 14 13 18 18 Si 1.86801 * 119.99709 * 189.37272 * 16 14 13 19 19 H 1.48493 * 109.47207 * 90.00028 * 18 16 14 20 20 H 1.48501 * 109.46909 * 210.00152 * 18 16 14 21 21 H 1.48500 * 109.47277 * 329.99990 * 18 16 14 22 22 C 1.40846 * 119.68513 * 359.69193 * 13 12 11 23 23 C 1.36481 * 119.81608 * 0.02562 * 22 13 12 24 24 Cl 1.73599 * 119.92543 * 179.97438 * 23 22 13 25 25 C 1.50703 * 109.46698 * 305.77319 * 4 2 1 26 26 N 1.34777 * 119.99660 * 272.72940 * 25 4 2 27 27 O 1.21282 * 120.00164 * 92.73768 * 25 4 2 28 28 H 1.08999 * 109.47921 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46923 * 300.00636 * 1 2 3 30 30 H 1.09004 * 109.46943 * 60.00009 * 1 2 3 31 31 H 1.09001 * 109.46923 * 239.99364 * 2 1 3 32 32 H 1.09001 * 109.47528 * 180.26562 * 3 2 1 33 33 H 1.09007 * 109.47083 * 300.26474 * 3 2 1 34 34 H 1.09002 * 109.47136 * 60.25956 * 3 2 1 35 35 H 0.96998 * 120.00052 * 335.00600 * 6 4 2 36 36 H 0.96994 * 119.99893 * 5.17309 * 9 7 6 37 37 H 1.08004 * 119.90894 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.07907 * 180.26728 * 12 11 10 39 39 H 0.97001 * 120.00408 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.09035 * 180.02562 * 22 13 12 41 41 H 0.96996 * 120.00466 * 355.53058 * 26 25 4 42 42 H 0.97000 * 120.00036 * 175.53248 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1250 -0.6327 1.3025 6 7 1.6683 -2.1368 1.1819 7 6 2.3902 -3.0558 1.8531 8 8 3.3498 -2.7101 2.5150 9 7 2.0486 -4.3580 1.7908 10 6 2.7265 -5.2938 2.5683 11 6 3.3178 -4.9009 3.7686 12 6 3.9784 -5.8127 4.5382 13 6 4.0733 -7.1523 4.1122 14 6 4.7605 -8.1002 4.9007 15 1 4.7995 -7.9835 5.9737 16 6 5.3910 -9.1907 4.2923 17 7 5.5035 -9.2382 2.9892 18 14 6.0726 -10.5791 5.3398 19 1 5.0240 -11.6121 5.5356 20 1 7.2435 -11.1855 4.6568 21 1 6.4922 -10.0433 6.6597 22 6 3.4788 -7.5412 2.8961 23 6 2.8160 -6.6190 2.1392 24 17 2.0827 -7.0952 0.6395 25 6 1.4242 -0.0981 2.4755 26 7 2.0131 0.9643 3.0594 27 8 0.3989 -0.5528 2.9370 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0048 33 1 1.6729 1.9576 -0.8877 34 1 1.6806 1.9549 0.8923 35 1 0.9026 -2.4126 0.6541 36 1 1.3306 -4.6435 1.2044 37 1 3.2489 -3.8726 4.0917 38 1 4.4320 -5.5075 5.4696 39 1 5.9403 -9.9945 2.5673 40 1 3.5472 -8.5665 2.5634 41 1 2.8663 1.2877 2.7301 42 1 1.5838 1.4056 3.8089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455709252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:34 Heat of formation + Delta-G solvation = -61.429478 kcal Electronic energy + Delta-G solvation = -27007.667321 eV Core-core repulsion = 23012.969823 eV Total energy + Delta-G solvation = -3994.697498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68225 -39.37908 -37.59664 -36.30597 -35.49950 -34.42863 -33.86866 -33.29268 -32.72982 -29.41819 -29.05207 -27.56333 -27.10377 -24.85025 -22.33978 -21.87465 -21.01049 -20.18725 -19.90271 -18.19479 -17.69684 -17.38050 -16.85844 -16.58050 -15.87053 -15.34149 -14.98519 -14.77829 -14.47823 -14.26037 -14.04761 -13.66970 -13.39767 -13.31688 -12.93824 -12.82352 -12.50277 -12.46424 -12.30441 -11.75557 -11.50057 -11.37884 -11.28544 -11.20739 -11.14231 -10.94998 -10.63020 -10.35963 -10.22087 -10.04801 -9.73571 -9.71341 -9.60973 -9.30995 -9.00422 -8.93203 -7.51136 -6.97683 -6.74090 -4.39038 2.43594 2.54573 2.85219 2.90323 3.07115 3.08822 3.10768 3.21671 3.38398 3.75750 3.91892 4.36250 4.48998 4.54605 4.58654 4.69056 4.86063 5.15301 5.24727 5.30878 5.49986 5.52985 5.54060 5.67126 5.85016 5.98183 6.19575 6.39956 6.53092 6.64838 6.69086 6.89188 7.00908 7.12211 7.20164 7.25019 7.36660 7.70704 7.73038 7.93419 8.13265 8.17846 8.38286 8.45828 8.77666 8.81168 8.99406 10.17594 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.002734 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.808159 B =10237.816000 C =11069.035140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.154 4.154 4 C 0.153 3.847 5 H 0.109 0.891 6 N -0.729 5.729 7 C 0.701 3.299 8 O -0.578 6.578 9 N -0.660 5.660 10 C 0.031 3.969 11 C -0.077 4.077 12 C -0.204 4.204 13 C 0.108 3.892 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.797 5.797 18 Si 0.914 3.086 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.138 4.138 23 C -0.023 4.023 24 Cl -0.121 7.121 25 C 0.513 3.487 26 N -0.854 5.854 27 O -0.533 6.533 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.396 0.604 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.282 0.718 40 H 0.137 0.863 41 H 0.401 0.599 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 16.450 -7.416 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.212 4.212 4 C 0.043 3.957 5 H 0.127 0.873 6 N -0.386 5.386 7 C 0.402 3.598 8 O -0.455 6.455 9 N -0.305 5.305 10 C -0.064 4.064 11 C -0.097 4.097 12 C -0.224 4.224 13 C 0.105 3.895 14 C -0.484 4.484 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.423 5.423 18 Si 0.739 3.261 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.158 4.158 23 C -0.051 4.051 24 Cl -0.093 7.093 25 C 0.296 3.704 26 N -0.419 5.419 27 O -0.408 6.408 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.230 0.770 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.229 0.771 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.121 16.131 -6.974 18.609 hybrid contribution -0.095 -0.620 -0.165 0.648 sum -6.216 15.511 -7.139 18.171 Atomic orbital electron populations 1.21927 0.94087 1.02570 1.02438 1.21332 0.97084 0.96778 0.96454 1.21944 1.01573 0.94797 1.02915 1.20701 1.01194 0.81109 0.92718 0.87310 1.44749 1.34350 1.04743 1.54730 1.15885 0.82469 0.81029 0.80452 1.90878 1.29377 1.79946 1.45346 1.42004 1.37879 1.04759 1.45860 1.16677 1.08996 0.86420 0.94268 1.20450 0.97949 0.99470 0.91855 1.20823 1.06910 0.93031 1.01630 1.17558 0.89354 0.91279 0.91288 1.19526 1.28331 1.05349 0.95160 0.90064 1.25931 0.94774 0.98715 0.95224 1.69784 1.33090 1.29295 1.10126 0.86205 0.78785 0.80514 0.80600 1.19298 1.20264 1.18614 1.20942 0.99015 0.99037 0.96823 1.20267 1.03367 0.93501 0.87986 1.98244 1.82906 1.92361 1.35798 1.21155 0.84467 0.79502 0.85304 1.43936 1.26307 1.33980 1.37643 1.90735 1.24516 1.61014 1.64561 0.92218 0.91958 0.92064 0.88987 0.91823 0.91557 0.91928 0.76662 0.77003 0.86019 0.88003 0.90716 0.84574 0.77069 0.77058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.60 37.16 0.32 -0.91 16 2 C -0.10 -0.74 2.84 -90.62 -0.26 -1.00 16 3 C -0.15 -0.86 8.82 37.15 0.33 -0.53 16 4 C 0.15 1.72 2.14 -69.08 -0.15 1.57 16 5 H 0.11 1.25 7.58 -51.93 -0.39 0.86 16 6 N -0.73 -9.87 4.66 -59.81 -0.28 -10.15 16 7 C 0.70 12.88 8.30 -86.92 -0.72 12.16 16 8 O -0.58 -12.52 13.25 5.29 0.07 -12.45 16 9 N -0.66 -12.45 5.14 -14.07 -0.07 -12.53 16 10 C 0.03 0.70 6.41 -83.52 -0.54 0.16 16 11 C -0.08 -1.85 8.61 -39.80 -0.34 -2.20 16 12 C -0.20 -5.08 9.74 -39.25 -0.38 -5.46 16 13 C 0.11 2.85 5.55 -106.80 -0.59 2.26 16 14 C -0.45 -11.78 9.05 -37.86 -0.34 -12.13 16 15 H 0.08 2.02 7.86 -52.49 -0.41 1.60 16 16 C 0.07 1.75 5.27 -17.34 -0.09 1.65 16 17 N -0.80 -20.37 10.81 55.54 0.60 -19.77 16 18 Si 0.91 18.50 29.57 -169.99 -5.03 13.47 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.14 -3.52 8.36 -39.23 -0.33 -3.85 16 23 C -0.02 -0.53 6.30 -39.72 -0.25 -0.78 16 24 Cl -0.12 -2.36 27.78 -51.86 -1.44 -3.80 16 25 C 0.51 6.41 5.52 -10.98 -0.06 6.35 16 26 N -0.85 -7.24 7.74 31.22 0.24 -7.00 16 27 O -0.53 -8.83 16.68 5.56 0.09 -8.74 16 28 H 0.06 0.50 6.82 -51.93 -0.35 0.15 16 29 H 0.06 0.60 6.64 -51.93 -0.34 0.26 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 6.48 -51.93 -0.34 0.01 16 35 H 0.40 4.48 7.25 -40.82 -0.30 4.18 16 36 H 0.40 6.40 7.82 -40.82 -0.32 6.08 16 37 H 0.12 2.95 5.91 -52.48 -0.31 2.64 16 38 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 40 H 0.14 3.61 6.21 -52.49 -0.33 3.28 16 41 H 0.40 2.32 8.59 -40.82 -0.35 1.97 16 42 H 0.40 2.97 8.93 -40.82 -0.36 2.60 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -32.50 361.46 -8.83 -41.32 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -5.06 Total: 16.88 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.41 Total: -2.70 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.49 Total: -49.44 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.16 Total: -21.19 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.44 Total: -3.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.50 -8.83 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455709252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.106 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds