Wall clock time and date at job start Tue Mar 31 2020 22:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47578 * 2 1 4 4 C 1.53001 * 109.47023 * 120.00082 * 2 1 3 5 5 H 1.08999 * 109.47690 * 185.77209 * 4 2 1 6 6 N 1.46505 * 109.47372 * 65.76756 * 4 2 1 7 7 C 1.34772 * 119.99991 * 155.00036 * 6 4 2 8 8 O 1.21582 * 120.00332 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99982 * 180.02562 * 7 6 4 10 10 C 1.39278 * 119.99969 * 185.17579 * 9 7 6 11 11 C 1.39461 * 119.83821 * 27.17145 * 10 9 7 12 12 C 1.36377 * 120.18028 * 179.71524 * 11 10 9 13 13 C 1.40891 * 119.84478 * 0.57977 * 12 11 10 14 14 C 1.41156 * 120.15901 * 179.72006 * 13 12 11 15 15 H 1.07999 * 119.99773 * 29.47512 * 14 13 12 16 16 C 1.39888 * 119.99876 * 209.47479 * 14 13 12 17 17 N 1.30877 * 120.00300 * 9.37488 * 16 14 13 18 18 Si 1.86801 * 119.99709 * 189.37272 * 16 14 13 19 19 H 1.48493 * 109.47207 * 90.00028 * 18 16 14 20 20 H 1.48501 * 109.46909 * 210.00152 * 18 16 14 21 21 H 1.48500 * 109.47277 * 329.99990 * 18 16 14 22 22 C 1.40846 * 119.68513 * 359.69193 * 13 12 11 23 23 C 1.36481 * 119.81608 * 0.02562 * 22 13 12 24 24 Cl 1.73599 * 119.92543 * 179.97438 * 23 22 13 25 25 C 1.50703 * 109.46698 * 305.77319 * 4 2 1 26 26 N 1.34777 * 119.99660 * 272.72940 * 25 4 2 27 27 O 1.21282 * 120.00164 * 92.73768 * 25 4 2 28 28 H 1.08999 * 109.47921 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46923 * 300.00636 * 1 2 3 30 30 H 1.09004 * 109.46943 * 60.00009 * 1 2 3 31 31 H 1.09001 * 109.46923 * 239.99364 * 2 1 3 32 32 H 1.09001 * 109.47528 * 180.26562 * 3 2 1 33 33 H 1.09007 * 109.47083 * 300.26474 * 3 2 1 34 34 H 1.09002 * 109.47136 * 60.25956 * 3 2 1 35 35 H 0.96998 * 120.00052 * 335.00600 * 6 4 2 36 36 H 0.96994 * 119.99893 * 5.17309 * 9 7 6 37 37 H 1.08004 * 119.90894 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.07907 * 180.26728 * 12 11 10 39 39 H 0.97001 * 120.00408 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.09035 * 180.02562 * 22 13 12 41 41 H 0.96996 * 120.00466 * 355.53058 * 26 25 4 42 42 H 0.97000 * 120.00036 * 175.53248 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1250 -0.6327 1.3025 6 7 1.6683 -2.1368 1.1819 7 6 2.3902 -3.0558 1.8531 8 8 3.3498 -2.7101 2.5150 9 7 2.0486 -4.3580 1.7908 10 6 2.7265 -5.2938 2.5683 11 6 3.3178 -4.9009 3.7686 12 6 3.9784 -5.8127 4.5382 13 6 4.0733 -7.1523 4.1122 14 6 4.7605 -8.1002 4.9007 15 1 4.7995 -7.9835 5.9737 16 6 5.3910 -9.1907 4.2923 17 7 5.5035 -9.2382 2.9892 18 14 6.0726 -10.5791 5.3398 19 1 5.0240 -11.6121 5.5356 20 1 7.2435 -11.1855 4.6568 21 1 6.4922 -10.0433 6.6597 22 6 3.4788 -7.5412 2.8961 23 6 2.8160 -6.6190 2.1392 24 17 2.0827 -7.0952 0.6395 25 6 1.4242 -0.0981 2.4755 26 7 2.0131 0.9643 3.0594 27 8 0.3989 -0.5528 2.9370 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0048 33 1 1.6729 1.9576 -0.8877 34 1 1.6806 1.9549 0.8923 35 1 0.9026 -2.4126 0.6541 36 1 1.3306 -4.6435 1.2044 37 1 3.2489 -3.8726 4.0917 38 1 4.4320 -5.5075 5.4696 39 1 5.9403 -9.9945 2.5673 40 1 3.5472 -8.5665 2.5634 41 1 2.8663 1.2877 2.7301 42 1 1.5838 1.4056 3.8089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455709252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:33 Heat of formation + Delta-G solvation = -84.633073 kcal Electronic energy + Delta-G solvation = -27008.673504 eV Core-core repulsion = 23012.969823 eV Total energy + Delta-G solvation = -3995.703681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90520 -40.71001 -39.29196 -37.26902 -37.24133 -36.12239 -35.04862 -34.63177 -33.98683 -31.30141 -30.83183 -28.34381 -28.00840 -26.56386 -23.80700 -23.10696 -22.67127 -21.70727 -20.79756 -19.68973 -19.17714 -18.84588 -17.92398 -17.77724 -17.20383 -16.77436 -16.44949 -16.08201 -15.94842 -15.51471 -15.29354 -14.92116 -14.72485 -14.53151 -14.34886 -14.19509 -14.10244 -13.54974 -13.44766 -13.06441 -12.97375 -12.84718 -12.69708 -12.33816 -12.11460 -12.04634 -11.98090 -11.86862 -11.78115 -11.55487 -11.36179 -11.30240 -11.04844 -10.76874 -10.60496 -10.12586 -9.40050 -8.81713 -8.57695 -6.33308 0.65824 0.95901 1.36077 1.41323 1.43451 1.52254 1.55415 1.74218 2.07012 2.23368 2.63527 2.76163 3.23390 3.59216 3.63678 3.84768 3.96385 4.15000 4.32022 4.45255 4.59811 4.68434 4.79529 4.88989 4.92751 4.99787 5.01386 5.14336 5.19390 5.25520 5.28080 5.36679 5.41999 5.46172 5.60594 5.86030 5.89651 5.96191 6.09038 6.23320 6.42034 6.52428 6.86679 6.89387 6.97825 7.31949 7.51240 8.35506 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.002734 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.808159 B =10237.816000 C =11069.035140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.153 4.153 4 C 0.147 3.853 5 H 0.109 0.891 6 N -0.712 5.712 7 C 0.698 3.302 8 O -0.612 6.612 9 N -0.657 5.657 10 C 0.042 3.958 11 C -0.086 4.086 12 C -0.214 4.214 13 C 0.081 3.919 14 C -0.486 4.486 15 H 0.081 0.919 16 C 0.032 3.968 17 N -0.828 5.828 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.259 1.259 22 C -0.153 4.153 23 C -0.029 4.029 24 Cl -0.086 7.086 25 C 0.507 3.493 26 N -0.835 5.835 27 O -0.581 6.581 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.411 0.589 36 H 0.409 0.591 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.289 0.711 40 H 0.123 0.877 41 H 0.416 0.584 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 17.377 -8.699 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.211 4.211 4 C 0.038 3.962 5 H 0.127 0.873 6 N -0.368 5.368 7 C 0.399 3.601 8 O -0.492 6.492 9 N -0.304 5.304 10 C -0.054 4.054 11 C -0.106 4.106 12 C -0.234 4.234 13 C 0.078 3.922 14 C -0.516 4.516 15 H 0.100 0.900 16 C -0.183 4.183 17 N -0.454 5.454 18 Si 0.808 3.192 19 H -0.186 1.186 20 H -0.194 1.194 21 H -0.183 1.183 22 C -0.174 4.174 23 C -0.058 4.058 24 Cl -0.058 7.058 25 C 0.291 3.709 26 N -0.400 5.400 27 O -0.460 6.460 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.248 0.752 36 H 0.246 0.754 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.247 0.753 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.236 17.139 -8.304 20.039 hybrid contribution -0.143 -0.730 0.119 0.753 sum -6.379 16.409 -8.185 19.415 Atomic orbital electron populations 1.21922 0.94318 1.02164 1.02509 1.21367 0.96756 0.97831 0.94809 1.21961 1.02322 0.93152 1.03632 1.21044 1.01258 0.79780 0.94133 0.87295 1.44649 1.33755 1.05112 1.53305 1.16062 0.82479 0.81160 0.80392 1.90851 1.31062 1.80436 1.46864 1.41882 1.38038 1.04695 1.45748 1.16709 1.07708 0.87026 0.93945 1.20510 0.98441 0.99155 0.92509 1.20957 1.07376 0.92993 1.02121 1.17859 0.90211 0.91971 0.92175 1.19767 1.29738 1.06768 0.95332 0.90049 1.26764 0.94518 1.00597 0.96373 1.69841 1.33696 1.30256 1.11629 0.85114 0.78247 0.77081 0.78752 1.18587 1.19396 1.18284 1.20864 1.00226 0.98895 0.97390 1.20276 1.02950 0.93396 0.89153 1.98241 1.82122 1.92162 1.33267 1.21385 0.83986 0.79988 0.85540 1.43786 1.26513 1.32612 1.37066 1.90716 1.26607 1.62732 1.65927 0.92922 0.93797 0.90005 0.87673 0.90722 0.90044 0.92053 0.75173 0.75395 0.86239 0.87516 0.90029 0.85901 0.75291 0.76244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.60 71.98 0.62 -1.52 16 2 C -0.09 -1.13 2.84 -10.80 -0.03 -1.16 16 3 C -0.15 -1.25 8.82 71.98 0.64 -0.61 16 4 C 0.15 3.08 2.14 44.25 0.09 3.17 16 5 H 0.11 2.32 7.58 -2.39 -0.02 2.30 16 6 N -0.71 -18.39 4.66 -461.41 -2.15 -20.54 16 7 C 0.70 25.19 8.30 179.06 1.49 26.68 16 8 O -0.61 -26.43 13.25 -3.97 -0.05 -26.48 16 9 N -0.66 -24.33 5.14 -316.70 -1.63 -25.95 16 10 C 0.04 1.90 6.41 38.58 0.25 2.15 16 11 C -0.09 -4.20 8.61 22.13 0.19 -4.01 16 12 C -0.21 -11.01 9.74 22.49 0.22 -10.79 16 13 C 0.08 4.39 5.55 -21.28 -0.12 4.28 16 14 C -0.49 -25.94 9.05 23.39 0.21 -25.73 16 15 H 0.08 4.16 7.86 -2.91 -0.02 4.14 16 16 C 0.03 1.58 5.27 85.23 0.45 2.03 16 17 N -0.83 -42.90 10.81 21.82 0.24 -42.66 16 18 Si 0.99 37.94 29.57 68.60 2.03 39.97 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 C -0.15 -8.01 8.36 22.50 0.19 -7.82 16 23 C -0.03 -1.34 6.30 22.18 0.14 -1.20 16 24 Cl -0.09 -3.27 27.78 -2.72 -0.08 -3.35 16 25 C 0.51 12.23 5.52 87.66 0.48 12.71 16 26 N -0.84 -13.04 7.74 -173.53 -1.34 -14.38 16 27 O -0.58 -19.17 16.68 -3.04 -0.05 -19.22 16 28 H 0.05 0.80 6.82 -2.39 -0.02 0.79 16 29 H 0.04 0.80 6.64 -2.39 -0.02 0.78 16 30 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.52 6.48 -2.39 -0.02 0.51 16 35 H 0.41 8.59 7.25 -92.71 -0.67 7.92 16 36 H 0.41 12.69 7.82 -92.71 -0.73 11.96 16 37 H 0.12 5.90 5.91 -2.91 -0.02 5.88 16 38 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 40 H 0.12 6.69 6.21 -2.91 -0.02 6.67 16 41 H 0.42 4.02 8.59 -92.71 -0.80 3.22 16 42 H 0.41 5.56 8.93 -92.71 -0.83 4.73 16 Total: -1.00 -71.86 361.46 -0.12 -71.97 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -1.89 Total: 42.50 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.81 Total: -1.85 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.89 Total: -103.54 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.10 Total: -45.70 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.08 Total: -3.35 kcal Total: -71.86 -0.12 -71.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455709252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.661 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds