Wall clock time and date at job start Tue Mar 31 2020 22:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08990 * 109.47095 * 257.51336 * 3 2 1 5 5 N 1.46499 * 109.46908 * 137.50809 * 3 2 1 6 6 S 1.65593 * 119.99833 * 95.00324 * 5 3 2 7 7 O 1.42104 * 104.27905 * 308.92754 * 6 5 3 8 8 O 1.42102 * 104.27718 * 181.06534 * 6 5 3 9 9 C 1.81399 * 104.45079 * 64.99683 * 6 5 3 10 10 C 1.53005 * 109.47445 * 179.97438 * 9 6 5 11 11 C 1.52993 * 109.47212 * 300.00460 * 10 9 6 12 12 C 1.53000 * 109.46632 * 59.99873 * 10 9 6 13 13 C 1.50696 * 109.47353 * 179.97438 * 10 9 6 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 10 9 15 15 C 1.37870 * 119.99993 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00258 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47216 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47057 * 120.00171 * 17 15 13 20 20 H 1.48500 * 109.47389 * 240.00151 * 17 15 13 21 21 C 1.50701 * 109.46762 * 17.50975 * 3 2 1 22 22 C 1.38246 * 119.97462 * 79.72684 * 21 3 2 23 23 C 1.38201 * 120.02145 * 179.72120 * 22 21 3 24 24 C 1.38455 * 119.97936 * 0.52679 * 23 22 21 25 25 F 1.35097 * 120.03201 * 179.72277 * 24 23 22 26 26 C 1.38465 * 119.94626 * 359.74825 * 24 23 22 27 27 C 1.38198 * 119.97107 * 0.02562 * 26 24 23 28 28 H 4.18738 * 15.03887 * 359.97438 * 4 2 1 29 29 H 0.97001 * 119.99882 * 274.99796 * 5 3 2 30 30 H 1.09001 * 109.47190 * 299.99797 * 9 6 5 31 31 H 1.09004 * 109.47089 * 59.99930 * 9 6 5 32 32 H 1.09002 * 109.47722 * 59.99491 * 11 10 9 33 33 H 1.09000 * 109.47250 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.46862 * 299.99541 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00452 * 12 10 9 36 36 H 1.09000 * 109.46968 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.47398 * 300.00272 * 12 10 9 38 38 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 39 39 H 1.07995 * 119.98522 * 359.97438 * 22 21 3 40 40 H 1.08002 * 120.00751 * 180.29503 * 23 22 21 41 41 H 1.07996 * 120.01248 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.98059 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2230 1.0033 5 7 3.1338 1.0194 -0.9330 6 16 3.5270 2.5294 -0.3787 7 8 2.3898 2.9347 0.3708 8 8 3.9269 3.2374 -1.5441 9 6 4.9463 2.2540 0.7170 10 6 5.4086 3.5915 1.2987 11 6 5.8172 4.5287 0.1606 12 6 4.2651 4.2240 2.0945 13 6 6.5873 3.3627 2.2094 14 1 6.9688 2.3633 2.3582 15 6 7.1786 4.4291 2.8528 16 7 6.7137 5.6460 2.6722 17 14 8.6400 4.1455 3.9812 18 1 8.9667 2.6973 4.0135 19 1 9.8111 4.9055 3.4748 20 1 8.3045 4.6085 5.3517 21 6 3.1489 -1.3541 -0.4275 22 6 3.1779 -1.6885 -1.7686 23 6 3.6442 -2.9285 -2.1621 24 6 4.0723 -3.8401 -1.2120 25 9 4.5231 -5.0547 -1.5951 26 6 4.0374 -3.5062 0.1313 27 6 3.5751 -2.2639 0.5221 28 1 -1.0500 0.0004 -0.0003 29 1 3.2266 0.8093 -1.8754 30 1 4.6552 1.5861 1.5277 31 1 5.7611 1.8038 0.1500 32 1 4.9645 4.6942 -0.4978 33 1 6.1462 5.4817 0.5750 34 1 6.6319 4.0781 -0.4064 35 1 3.9739 3.5564 2.9054 36 1 4.5943 5.1771 2.5085 37 1 3.4123 4.3895 1.4361 38 1 7.1295 6.3963 3.1251 39 1 2.8398 -0.9789 -2.5092 40 1 3.6712 -3.1877 -3.2102 41 1 4.3707 -4.2166 0.8733 42 1 3.5482 -2.0031 1.5699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491374780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:48 Heat of formation + Delta-G solvation = -34.353401 kcal Electronic energy + Delta-G solvation = -27336.636426 eV Core-core repulsion = 23325.236780 eV Total energy + Delta-G solvation = -4011.399646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.16590 -39.79110 -36.71117 -36.32314 -36.16494 -35.33957 -32.28810 -31.70465 -31.49612 -30.68212 -26.71651 -26.22264 -25.74721 -25.25111 -23.42456 -22.09115 -19.73784 -19.09429 -18.54491 -18.08118 -17.47599 -16.89030 -16.35606 -15.90579 -15.85928 -15.51500 -15.29777 -14.81558 -14.72131 -14.64211 -14.12405 -13.86922 -13.35399 -13.16051 -13.02028 -12.63468 -12.56635 -12.54529 -12.12641 -11.85581 -11.48794 -11.35390 -11.18510 -11.10776 -10.97040 -10.75769 -10.57756 -10.43392 -10.34376 -10.28312 -10.19351 -9.93554 -9.68674 -9.45337 -9.43155 -8.94998 -8.71520 -8.43149 -6.06259 -4.18373 0.66865 0.81677 0.90929 2.56150 2.75138 3.21682 3.23251 3.32012 3.32961 3.34401 3.94028 4.16765 4.22528 4.34732 4.36216 4.48950 4.61100 4.72784 4.79900 4.93651 5.02777 5.19374 5.44617 5.55807 5.60015 5.63006 5.75840 5.79142 5.83441 5.88946 6.16833 6.32478 6.52958 6.66289 6.76112 6.85927 6.90014 7.02197 7.28339 7.46973 7.55674 7.65349 7.95148 8.06445 8.29595 8.80427 9.47411 10.95126 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003578 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.976807 B = 7823.379581 C = 9142.819373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.199 4.199 3 C 0.312 3.688 4 H 0.116 0.884 5 N -1.120 6.120 6 S 2.587 3.413 7 O -0.955 6.955 8 O -0.960 6.960 9 C -0.581 4.581 10 C 0.082 3.918 11 C -0.164 4.164 12 C -0.164 4.164 13 C -0.501 4.501 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.097 4.097 22 C -0.073 4.073 23 C -0.151 4.151 24 C 0.100 3.900 25 F -0.140 7.140 26 C -0.150 4.150 27 C -0.074 4.074 28 H 0.219 0.781 29 H 0.413 0.587 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.122 -16.489 -6.464 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.201 4.201 3 C 0.204 3.796 4 H 0.134 0.866 5 N -0.875 5.875 6 S 2.685 3.315 7 O -0.945 6.945 8 O -0.950 6.950 9 C -0.715 4.715 10 C 0.080 3.920 11 C -0.222 4.222 12 C -0.222 4.222 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.098 4.098 22 C -0.092 4.092 23 C -0.170 4.170 24 C 0.081 3.919 25 F -0.119 7.119 26 C -0.168 4.168 27 C -0.092 4.092 28 H 0.236 0.764 29 H 0.248 0.752 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.547 -15.487 -6.503 18.847 hybrid contribution 1.205 -0.930 0.411 1.577 sum -7.342 -16.418 -6.092 18.988 Atomic orbital electron populations 1.24900 0.95786 0.99066 0.99049 1.23016 0.94126 1.01304 1.01606 1.16140 0.83993 0.85542 0.93876 0.86637 1.56195 1.81979 1.31478 1.17832 1.05934 0.77424 0.72135 0.75971 1.93572 1.48291 1.79171 1.73426 1.93566 1.84535 1.68977 1.47921 1.30547 1.16574 1.10732 1.13640 1.17941 0.95385 0.85126 0.93546 1.22279 0.99334 1.04012 0.96564 1.22282 0.95650 1.04395 0.99854 1.20965 1.13097 0.93793 1.26228 0.92195 1.24936 0.97141 0.95135 0.96515 1.69808 1.40781 0.98672 1.42852 0.86484 0.82414 0.78286 0.80482 1.19828 1.20950 1.20941 1.19805 1.00740 0.95252 0.94041 1.20805 0.97179 0.95633 0.95559 1.21122 1.02060 0.93944 0.99874 1.17771 0.99438 0.81335 0.93375 1.91506 1.86754 1.41673 1.91935 1.21142 1.02971 0.98326 0.94406 1.20945 0.96082 0.92100 1.00104 0.76396 0.75249 0.86465 0.85968 0.95416 0.88596 0.94408 0.94441 0.88609 0.95323 0.92772 0.84808 0.84433 0.84285 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 19.25 29.55 0.57 -1.37 16 2 C -0.20 -2.55 12.77 -37.12 -0.47 -3.02 16 3 C 0.31 3.73 2.71 -71.87 -0.20 3.54 16 4 H 0.12 1.27 7.01 -51.93 -0.36 0.90 16 5 N -1.12 -14.75 5.27 -8.32 -0.04 -14.79 16 6 S 2.59 46.18 4.42 -107.50 -0.47 45.71 16 7 O -0.95 -19.50 15.35 -57.54 -0.88 -20.38 16 8 O -0.96 -19.57 15.70 -57.54 -0.90 -20.47 16 9 C -0.58 -10.77 4.90 37.16 0.18 -10.58 16 10 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 11 C -0.16 -3.97 7.78 37.15 0.29 -3.68 16 12 C -0.16 -3.93 7.77 37.16 0.29 -3.64 16 13 C -0.50 -12.81 8.01 -34.44 -0.28 -13.08 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 16 N -0.88 -23.72 9.35 55.43 0.52 -23.20 16 17 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.10 -0.98 4.92 -104.62 -0.51 -1.49 16 22 C -0.07 -0.68 9.13 -39.59 -0.36 -1.04 16 23 C -0.15 -1.34 10.03 -39.51 -0.40 -1.74 16 24 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 25 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 26 C -0.15 -1.32 10.03 -39.51 -0.40 -1.72 16 27 C -0.07 -0.66 9.67 -39.59 -0.38 -1.05 16 28 H 0.22 1.67 7.80 -54.09 -0.42 1.24 16 29 H 0.41 4.52 7.06 -34.47 -0.24 4.28 16 30 H 0.12 1.89 7.44 -51.92 -0.39 1.50 16 31 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 32 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 33 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 37 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 38 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.13 1.04 6.83 -52.49 -0.36 0.68 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.14 0.99 8.04 -52.48 -0.42 0.57 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.55 361.99 -8.49 -41.04 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.05 Total: 7.56 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: -2.13 Total: -34.76 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.47 Total: -37.99 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.79 Total: -40.85 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 46.18 SS G_CDS: -0.47 Total: 45.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.55 -8.49 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491374780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.684 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds