Wall clock time and date at job start Tue Mar 31 2020 22:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08990 * 109.47095 * 257.51336 * 3 2 1 5 5 N 1.46499 * 109.46908 * 137.50809 * 3 2 1 6 6 S 1.65593 * 119.99833 * 95.00324 * 5 3 2 7 7 O 1.42104 * 104.27905 * 308.92754 * 6 5 3 8 8 O 1.42102 * 104.27718 * 181.06534 * 6 5 3 9 9 C 1.81399 * 104.45079 * 64.99683 * 6 5 3 10 10 C 1.53005 * 109.47445 * 179.97438 * 9 6 5 11 11 C 1.52993 * 109.47212 * 300.00460 * 10 9 6 12 12 C 1.53000 * 109.46632 * 59.99873 * 10 9 6 13 13 C 1.50696 * 109.47353 * 179.97438 * 10 9 6 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 10 9 15 15 C 1.37870 * 119.99993 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00258 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47216 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47057 * 120.00171 * 17 15 13 20 20 H 1.48500 * 109.47389 * 240.00151 * 17 15 13 21 21 C 1.50701 * 109.46762 * 17.50975 * 3 2 1 22 22 C 1.38246 * 119.97462 * 79.72684 * 21 3 2 23 23 C 1.38201 * 120.02145 * 179.72120 * 22 21 3 24 24 C 1.38455 * 119.97936 * 0.52679 * 23 22 21 25 25 F 1.35097 * 120.03201 * 179.72277 * 24 23 22 26 26 C 1.38465 * 119.94626 * 359.74825 * 24 23 22 27 27 C 1.38198 * 119.97107 * 0.02562 * 26 24 23 28 28 H 4.18738 * 15.03887 * 359.97438 * 4 2 1 29 29 H 0.97001 * 119.99882 * 274.99796 * 5 3 2 30 30 H 1.09001 * 109.47190 * 299.99797 * 9 6 5 31 31 H 1.09004 * 109.47089 * 59.99930 * 9 6 5 32 32 H 1.09002 * 109.47722 * 59.99491 * 11 10 9 33 33 H 1.09000 * 109.47250 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.46862 * 299.99541 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00452 * 12 10 9 36 36 H 1.09000 * 109.46968 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.47398 * 300.00272 * 12 10 9 38 38 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 39 39 H 1.07995 * 119.98522 * 359.97438 * 22 21 3 40 40 H 1.08002 * 120.00751 * 180.29503 * 23 22 21 41 41 H 1.07996 * 120.01248 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.98059 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2230 1.0033 5 7 3.1338 1.0194 -0.9330 6 16 3.5270 2.5294 -0.3787 7 8 2.3898 2.9347 0.3708 8 8 3.9269 3.2374 -1.5441 9 6 4.9463 2.2540 0.7170 10 6 5.4086 3.5915 1.2987 11 6 5.8172 4.5287 0.1606 12 6 4.2651 4.2240 2.0945 13 6 6.5873 3.3627 2.2094 14 1 6.9688 2.3633 2.3582 15 6 7.1786 4.4291 2.8528 16 7 6.7137 5.6460 2.6722 17 14 8.6400 4.1455 3.9812 18 1 8.9667 2.6973 4.0135 19 1 9.8111 4.9055 3.4748 20 1 8.3045 4.6085 5.3517 21 6 3.1489 -1.3541 -0.4275 22 6 3.1779 -1.6885 -1.7686 23 6 3.6442 -2.9285 -2.1621 24 6 4.0723 -3.8401 -1.2120 25 9 4.5231 -5.0547 -1.5951 26 6 4.0374 -3.5062 0.1313 27 6 3.5751 -2.2639 0.5221 28 1 -1.0500 0.0004 -0.0003 29 1 3.2266 0.8093 -1.8754 30 1 4.6552 1.5861 1.5277 31 1 5.7611 1.8038 0.1500 32 1 4.9645 4.6942 -0.4978 33 1 6.1462 5.4817 0.5750 34 1 6.6319 4.0781 -0.4064 35 1 3.9739 3.5564 2.9054 36 1 4.5943 5.1771 2.5085 37 1 3.4123 4.3895 1.4361 38 1 7.1295 6.3963 3.1251 39 1 2.8398 -0.9789 -2.5092 40 1 3.6712 -3.1877 -3.2102 41 1 4.3707 -4.2166 0.8733 42 1 3.5482 -2.0031 1.5699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491374780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:47 Heat of formation + Delta-G solvation = -54.067419 kcal Electronic energy + Delta-G solvation = -27337.491290 eV Core-core repulsion = 23325.236780 eV Total energy + Delta-G solvation = -4012.254510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90770 -40.52256 -38.16175 -38.11393 -37.17092 -36.85643 -33.61801 -33.22519 -32.16699 -31.48072 -28.33597 -27.66931 -27.26285 -27.04559 -24.10608 -22.82472 -21.41408 -20.42258 -19.54601 -18.99713 -18.64683 -17.93862 -17.75107 -17.12825 -16.90025 -16.59996 -16.58360 -16.38604 -15.93397 -15.50367 -15.07487 -14.85193 -14.62705 -14.48525 -14.41052 -14.04902 -13.82066 -13.66671 -13.38364 -13.14728 -13.02394 -12.89520 -12.81521 -12.72835 -12.48513 -12.17795 -12.10968 -12.00579 -11.96778 -11.55235 -11.51032 -11.44507 -11.20192 -10.93425 -10.49900 -10.39995 -10.08993 -9.67014 -8.01063 -6.19256 -0.68454 0.03705 0.25235 1.44753 1.48433 1.51963 1.57333 1.87345 2.18286 2.46024 2.54272 2.82196 3.21262 3.23856 3.28902 3.45883 3.68124 3.70027 3.91385 3.96439 4.02986 4.20243 4.29579 4.31721 4.61667 4.66638 4.88198 4.89145 4.89801 4.95915 5.01099 5.05550 5.10848 5.13263 5.20920 5.40860 5.45691 5.52878 5.67676 5.85635 5.95227 5.99834 6.13886 6.36137 6.68426 6.86124 7.49297 8.98999 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003578 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.976807 B = 7823.379581 C = 9142.819373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.237 4.237 3 C 0.306 3.694 4 H 0.124 0.876 5 N -1.105 6.105 6 S 2.608 3.392 7 O -0.982 6.982 8 O -0.989 6.989 9 C -0.585 4.585 10 C 0.070 3.930 11 C -0.161 4.161 12 C -0.160 4.160 13 C -0.513 4.513 14 H 0.066 0.934 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.953 3.047 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.103 4.103 22 C -0.080 4.080 23 C -0.152 4.152 24 C 0.085 3.915 25 F -0.147 7.147 26 C -0.150 4.150 27 C -0.077 4.077 28 H 0.249 0.751 29 H 0.424 0.576 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.260 0.740 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 -18.550 -6.406 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.199 3.801 4 H 0.141 0.859 5 N -0.864 5.864 6 S 2.706 3.294 7 O -0.972 6.972 8 O -0.979 6.979 9 C -0.718 4.718 10 C 0.068 3.932 11 C -0.219 4.219 12 C -0.218 4.218 13 C -0.552 4.552 14 H 0.084 0.916 15 C -0.182 4.182 16 N -0.547 5.547 17 Si 0.779 3.221 18 H -0.188 1.188 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.105 4.105 22 C -0.098 4.098 23 C -0.171 4.171 24 C 0.066 3.934 25 F -0.126 7.126 26 C -0.169 4.169 27 C -0.095 4.095 28 H 0.265 0.735 29 H 0.262 0.738 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.712 -17.556 -6.453 20.633 hybrid contribution 1.175 -0.344 0.361 1.277 sum -7.536 -17.900 -6.092 20.354 Atomic orbital electron populations 1.25781 0.96809 0.97743 0.97650 1.23417 0.94927 1.02584 1.02944 1.16345 0.83998 0.85869 0.93874 0.85865 1.55691 1.81538 1.30376 1.18745 1.04996 0.76637 0.72686 0.75049 1.93533 1.49162 1.80402 1.74095 1.93520 1.84837 1.70719 1.48811 1.30467 1.17750 1.08548 1.14989 1.17922 0.94798 0.87370 0.93140 1.22222 0.99567 1.03184 0.96952 1.22210 0.96082 1.03332 1.00179 1.21321 1.13637 0.93962 1.26284 0.91573 1.25659 0.99474 0.95068 0.97967 1.69952 1.41837 0.99280 1.43673 0.85587 0.79469 0.78482 0.78565 1.18793 1.21231 1.21063 1.19746 1.01500 0.94601 0.94680 1.20971 0.97178 0.96034 0.95627 1.21310 1.01454 0.93602 1.00713 1.18022 0.99999 0.81321 0.94079 1.91489 1.86930 1.42114 1.92044 1.21359 1.02444 0.98587 0.94513 1.21170 0.95551 0.91875 1.00926 0.73475 0.73846 0.83966 0.84068 0.95017 0.91106 0.94042 0.93826 0.91185 0.94915 0.93020 0.83725 0.82840 0.82599 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 19.25 74.32 1.43 -1.93 16 2 C -0.24 -5.65 12.77 31.13 0.40 -5.25 16 3 C 0.31 6.70 2.71 42.44 0.12 6.82 16 4 H 0.12 2.44 7.01 -2.39 -0.02 2.42 16 5 N -1.10 -27.11 5.27 -180.23 -0.95 -28.06 16 6 S 2.61 90.00 4.42 -56.49 -0.25 89.75 16 7 O -0.98 -39.27 15.35 -127.65 -1.96 -41.23 16 8 O -0.99 -39.61 15.70 -127.65 -2.00 -41.61 16 9 C -0.58 -20.62 4.90 71.98 0.35 -20.27 16 10 C 0.07 3.24 0.52 -52.93 -0.03 3.21 16 11 C -0.16 -7.85 7.78 71.98 0.56 -7.29 16 12 C -0.16 -7.70 7.77 71.98 0.56 -7.14 16 13 C -0.51 -25.74 8.01 25.60 0.21 -25.53 16 14 H 0.07 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.02 0.91 5.15 84.65 0.44 1.35 16 16 N -0.91 -49.51 9.35 21.44 0.20 -49.31 16 17 Si 0.95 41.23 29.54 68.60 2.03 43.26 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 C -0.10 -1.88 4.92 -19.86 -0.10 -1.97 16 22 C -0.08 -1.32 9.13 22.26 0.20 -1.11 16 23 C -0.15 -2.41 10.03 22.31 0.22 -2.19 16 24 C 0.08 1.49 7.30 22.38 0.16 1.66 16 25 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 26 C -0.15 -2.33 10.03 22.31 0.22 -2.10 16 27 C -0.08 -1.20 9.67 22.26 0.22 -0.99 16 28 H 0.25 3.08 7.80 -4.42 -0.03 3.05 16 29 H 0.42 8.51 7.06 -96.75 -0.68 7.83 16 30 H 0.14 4.23 7.44 -2.39 -0.02 4.22 16 31 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 32 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 33 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 34 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 37 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 38 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 39 H 0.15 1.96 6.83 -2.91 -0.02 1.94 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.16 1.81 8.04 -2.91 -0.02 1.78 16 Total: -1.00 -69.21 361.99 3.17 -66.04 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.37 Total: 25.96 kcal Atomic # 6 Polarization: -67.69 SS G_CDS: 4.96 Total: -62.73 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -0.75 Total: -77.37 kcal Atomic # 8 Polarization: -78.87 SS G_CDS: -3.96 Total: -82.83 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 90.00 SS G_CDS: -0.25 Total: 89.75 kcal Total: -69.21 3.17 -66.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491374780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.971 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds