Wall clock time and date at job start Tue Mar 31 2020 22:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99947 * 2 1 4 4 H 1.48507 * 109.46835 * 239.99855 * 3 2 1 5 5 H 1.48494 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47364 * 119.99930 * 3 2 1 7 7 C 1.37875 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00367 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99994 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.27941 * 313.06331 * 9 7 2 11 11 C 1.53493 * 114.21029 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98482 * 220.14689 * 11 9 7 13 13 C 1.34775 * 136.05720 * 207.08172 * 12 11 9 14 14 O 1.21725 * 119.99790 * 0.02562 * 13 12 11 15 15 C 1.46261 * 120.00178 * 180.02562 * 13 12 11 16 16 C 1.34972 * 119.99842 * 187.03115 * 15 13 12 17 17 C 1.47002 * 120.00187 * 11.10076 * 16 15 13 18 18 C 1.39973 * 120.11255 * 225.85523 * 17 16 15 19 19 C 1.37661 * 119.88628 * 179.78566 * 18 17 16 20 20 C 1.39023 * 120.11089 * 0.49583 * 19 18 17 21 21 O 1.35739 * 119.88495 * 179.76287 * 20 19 18 22 22 C 1.42906 * 116.99904 * 359.97245 * 21 20 19 23 23 F 1.39893 * 109.47081 * 299.99909 * 22 21 20 24 24 F 1.39899 * 109.46799 * 60.00546 * 22 21 20 25 25 C 1.39023 * 120.22936 * 359.73667 * 20 19 18 26 26 C 1.37666 * 120.11007 * 0.02643 * 25 20 19 27 27 C 1.47065 * 87.88479 * 27.34302 * 12 11 9 28 28 H 0.96993 * 120.00049 * 0.02562 * 1 2 3 29 29 H 0.96711 * 114.00016 * 46.93598 * 10 9 7 30 30 H 1.08997 * 113.46696 * 105.36665 * 11 9 7 31 31 H 1.09009 * 113.51592 * 334.93603 * 11 9 7 32 32 H 1.08003 * 119.99790 * 7.30204 * 15 13 12 33 33 H 1.07999 * 119.99787 * 191.09728 * 16 15 13 34 34 H 1.08003 * 120.05662 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.94115 * 180.20870 * 19 18 17 36 36 H 1.08996 * 109.46717 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.93944 * 180.02562 * 25 20 19 38 38 H 1.07998 * 120.05290 * 180.02562 * 26 25 20 39 39 H 1.09007 * 113.47014 * 87.44034 * 27 12 11 40 40 H 1.09003 * 113.46668 * 217.87575 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.1922 -2.5400 0.9592 11 6 2.1489 -3.7442 0.0005 12 7 1.2073 -4.3593 -0.9471 13 6 0.8320 -5.6139 -1.2658 14 8 1.3300 -6.5632 -0.6892 15 6 -0.1738 -5.8348 -2.3045 16 6 -0.6537 -7.0767 -2.5260 17 6 -0.3574 -8.1593 -1.5767 18 6 0.0572 -9.4111 -2.0462 19 6 0.3377 -10.4203 -1.1530 20 6 0.1998 -10.2010 0.2129 21 8 0.4730 -11.2008 1.0894 22 6 0.8958 -12.4495 0.5379 23 9 -0.1034 -12.9499 -0.3036 24 9 2.0721 -12.2608 -0.1956 25 6 -0.2163 -8.9610 0.6842 26 6 -0.4946 -7.9437 -0.2006 27 6 0.8605 -3.0033 -1.3985 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3716 -1.7542 0.9562 30 1 2.1878 -4.2512 0.9646 31 1 3.1377 -3.5675 -0.4229 32 1 -0.5293 -5.0048 -2.8971 33 1 -1.2554 -7.2750 -3.4006 34 1 0.1606 -9.5837 -3.1074 35 1 0.6609 -11.3854 -1.5141 36 1 1.0809 -13.1588 1.3446 37 1 -0.3214 -8.7957 1.7463 38 1 -0.8174 -6.9807 0.1666 39 1 1.5094 -2.6304 -2.1911 40 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492685602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:35 Heat of formation + Delta-G solvation = -130.936554 kcal Electronic energy + Delta-G solvation = -28788.285302 eV Core-core repulsion = 24206.484320 eV Total energy + Delta-G solvation = -4581.800982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.56651 -47.55487 -40.10428 -39.51559 -38.11762 -36.88246 -34.02701 -33.27101 -32.21225 -30.98339 -29.70937 -28.34107 -26.36195 -25.45947 -25.10716 -23.16339 -22.73782 -21.30364 -19.64091 -19.10501 -18.36143 -18.12111 -17.94509 -17.51654 -16.66904 -16.19179 -15.68571 -15.18344 -15.01070 -14.75501 -14.54599 -14.32328 -14.19915 -14.12602 -13.89006 -13.79111 -13.74029 -13.36401 -13.03600 -12.94175 -12.71440 -12.46309 -12.24597 -11.96808 -11.84202 -11.57360 -11.34910 -11.06331 -11.01674 -10.91001 -10.51477 -10.28498 -9.69816 -9.53086 -9.24473 -8.80699 -8.78655 -8.40476 -7.82028 -7.73248 -6.42550 -4.52931 0.89563 1.54769 1.95665 2.42640 3.14464 3.20515 3.22753 3.24978 3.61712 3.79888 3.89151 4.06512 4.16500 4.41966 4.79022 4.80540 4.87589 4.92195 5.02624 5.32597 5.42267 5.54953 5.60123 5.69146 5.89215 6.03833 6.06757 6.16693 6.25305 6.28384 6.39597 6.47441 6.50744 6.64215 6.66221 6.67641 6.81569 7.09550 7.15051 7.60667 7.78410 8.48937 8.53218 8.80328 9.18486 9.46646 10.64028 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.002257 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.665061 B =12402.985113 C =12703.963746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.107 3.893 12 N -0.626 5.626 13 C 0.555 3.445 14 O -0.551 6.551 15 C -0.185 4.185 16 C -0.045 4.045 17 C -0.079 4.079 18 C -0.069 4.069 19 C -0.203 4.203 20 C 0.106 3.894 21 O -0.322 6.322 22 C 0.411 3.589 23 F -0.201 7.201 24 F -0.199 7.199 25 C -0.141 4.141 26 C -0.004 4.004 27 C 0.070 3.930 28 H 0.275 0.725 29 H 0.394 0.606 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.179 0.821 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -18.332 -3.187 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.384 6.384 11 C -0.016 4.016 12 N -0.358 5.358 13 C 0.347 3.653 14 O -0.433 6.433 15 C -0.205 4.205 16 C -0.064 4.064 17 C -0.079 4.079 18 C -0.087 4.087 19 C -0.221 4.221 20 C 0.063 3.937 21 O -0.240 6.240 22 C 0.321 3.679 23 F -0.183 7.183 24 F -0.181 7.181 25 C -0.159 4.159 26 C -0.023 4.023 27 C -0.054 4.054 28 H 0.085 0.915 29 H 0.250 0.750 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.195 0.805 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.104 -19.457 -2.632 19.747 hybrid contribution 0.323 1.433 -0.719 1.635 sum -1.781 -18.025 -3.351 18.420 Atomic orbital electron populations 1.69248 1.06197 1.28333 1.50129 1.25076 0.95033 0.99928 0.93005 0.86364 0.79484 0.81521 0.79016 1.19878 1.20976 1.19814 1.21402 0.93895 0.89794 1.52122 0.91004 1.19559 0.85376 0.90990 0.84158 1.86043 1.45164 1.48395 1.58788 1.23314 0.93758 0.92199 0.92293 1.49745 1.41828 1.04768 1.39467 1.17891 0.83407 0.81131 0.82892 1.90837 1.58237 1.39842 1.54380 1.23081 0.99163 0.97641 1.00657 1.22209 0.96233 0.91559 0.96444 1.18838 1.02471 0.93343 0.93290 1.20892 0.97243 0.91482 0.99083 1.21215 1.07984 1.01196 0.91731 1.18945 0.98501 0.87978 0.88252 1.86557 1.81769 1.20046 1.35585 1.23309 0.72917 0.85628 0.86043 1.93085 1.62694 1.87501 1.75010 1.93104 1.49195 1.95400 1.80381 1.20212 1.04867 0.90285 1.00568 1.20956 0.93013 0.96780 0.91506 1.24287 1.00424 0.77979 1.02675 0.91505 0.74971 0.91557 0.89798 0.85202 0.84842 0.85730 0.85417 0.80487 0.85178 0.85607 0.90108 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.36 11.01 55.43 0.61 -21.75 16 2 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 3 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.53 -13.16 8.70 -34.44 -0.30 -13.46 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.24 5.69 1.58 -91.12 -0.14 5.54 16 10 O -0.57 -14.49 13.55 -35.23 -0.48 -14.97 16 11 C 0.11 2.32 8.02 -8.51 -0.07 2.25 16 12 N -0.63 -13.06 3.69 -186.77 -0.69 -13.74 16 13 C 0.56 11.03 7.11 -13.04 -0.09 10.94 16 14 O -0.55 -12.06 13.13 5.17 0.07 -12.00 16 15 C -0.18 -2.90 9.75 -37.52 -0.37 -3.27 16 16 C -0.04 -0.60 9.79 -37.19 -0.36 -0.97 16 17 C -0.08 -1.21 4.43 -105.05 -0.47 -1.67 16 18 C -0.07 -0.96 9.79 -39.14 -0.38 -1.34 16 19 C -0.20 -2.85 8.23 -39.50 -0.32 -3.18 16 20 C 0.11 1.56 6.49 -39.00 -0.25 1.31 16 21 O -0.32 -3.99 10.42 -18.92 -0.20 -4.19 16 22 C 0.41 3.64 5.98 101.05 0.60 4.24 16 23 F -0.20 -2.00 15.57 2.25 0.04 -1.97 16 24 F -0.20 -2.17 15.57 2.25 0.04 -2.14 16 25 C -0.14 -2.19 9.97 -39.50 -0.39 -2.58 16 26 C 0.00 -0.07 6.69 -39.14 -0.26 -0.33 16 27 C 0.07 1.46 7.76 -8.38 -0.07 1.39 16 28 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.39 10.10 6.32 45.56 0.29 10.39 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.68 8.10 -51.92 -0.42 1.26 16 32 H 0.13 1.79 7.98 -52.48 -0.42 1.38 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.13 1.63 5.07 -52.49 -0.27 1.36 16 36 H 0.18 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.13 2.17 7.26 -52.49 -0.38 1.79 16 39 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -29.72 351.01 -7.02 -36.74 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -3.70 Total: 14.07 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.97 Total: 0.54 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.08 Total: -35.49 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.61 Total: -31.15 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.72 -7.02 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492685602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.192 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds