Wall clock time and date at job start Tue Mar 31 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99947 * 2 1 4 4 H 1.48507 * 109.46835 * 239.99855 * 3 2 1 5 5 H 1.48494 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47364 * 119.99930 * 3 2 1 7 7 C 1.37875 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00367 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99994 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.27941 * 313.06331 * 9 7 2 11 11 C 1.53493 * 114.21029 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98482 * 220.14689 * 11 9 7 13 13 C 1.34775 * 136.05720 * 207.08172 * 12 11 9 14 14 O 1.21725 * 119.99790 * 0.02562 * 13 12 11 15 15 C 1.46261 * 120.00178 * 180.02562 * 13 12 11 16 16 C 1.34972 * 119.99842 * 187.03115 * 15 13 12 17 17 C 1.47002 * 120.00187 * 11.10076 * 16 15 13 18 18 C 1.39973 * 120.11255 * 225.85523 * 17 16 15 19 19 C 1.37661 * 119.88628 * 179.78566 * 18 17 16 20 20 C 1.39023 * 120.11089 * 0.49583 * 19 18 17 21 21 O 1.35739 * 119.88495 * 179.76287 * 20 19 18 22 22 C 1.42906 * 116.99904 * 359.97245 * 21 20 19 23 23 F 1.39893 * 109.47081 * 299.99909 * 22 21 20 24 24 F 1.39899 * 109.46799 * 60.00546 * 22 21 20 25 25 C 1.39023 * 120.22936 * 359.73667 * 20 19 18 26 26 C 1.37666 * 120.11007 * 0.02643 * 25 20 19 27 27 C 1.47065 * 87.88479 * 27.34302 * 12 11 9 28 28 H 0.96993 * 120.00049 * 0.02562 * 1 2 3 29 29 H 0.96711 * 114.00016 * 46.93598 * 10 9 7 30 30 H 1.08997 * 113.46696 * 105.36665 * 11 9 7 31 31 H 1.09009 * 113.51592 * 334.93603 * 11 9 7 32 32 H 1.08003 * 119.99790 * 7.30204 * 15 13 12 33 33 H 1.07999 * 119.99787 * 191.09728 * 16 15 13 34 34 H 1.08003 * 120.05662 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.94115 * 180.20870 * 19 18 17 36 36 H 1.08996 * 109.46717 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.93944 * 180.02562 * 25 20 19 38 38 H 1.07998 * 120.05290 * 180.02562 * 26 25 20 39 39 H 1.09007 * 113.47014 * 87.44034 * 27 12 11 40 40 H 1.09003 * 113.46668 * 217.87575 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.1922 -2.5400 0.9592 11 6 2.1489 -3.7442 0.0005 12 7 1.2073 -4.3593 -0.9471 13 6 0.8320 -5.6139 -1.2658 14 8 1.3300 -6.5632 -0.6892 15 6 -0.1738 -5.8348 -2.3045 16 6 -0.6537 -7.0767 -2.5260 17 6 -0.3574 -8.1593 -1.5767 18 6 0.0572 -9.4111 -2.0462 19 6 0.3377 -10.4203 -1.1530 20 6 0.1998 -10.2010 0.2129 21 8 0.4730 -11.2008 1.0894 22 6 0.8958 -12.4495 0.5379 23 9 -0.1034 -12.9499 -0.3036 24 9 2.0721 -12.2608 -0.1956 25 6 -0.2163 -8.9610 0.6842 26 6 -0.4946 -7.9437 -0.2006 27 6 0.8605 -3.0033 -1.3985 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3716 -1.7542 0.9562 30 1 2.1878 -4.2512 0.9646 31 1 3.1377 -3.5675 -0.4229 32 1 -0.5293 -5.0048 -2.8971 33 1 -1.2554 -7.2750 -3.4006 34 1 0.1606 -9.5837 -3.1074 35 1 0.6609 -11.3854 -1.5141 36 1 1.0809 -13.1588 1.3446 37 1 -0.3214 -8.7957 1.7463 38 1 -0.8174 -6.9807 0.1666 39 1 1.5094 -2.6304 -2.1911 40 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492685602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:34 Heat of formation + Delta-G solvation = -150.356220 kcal Electronic energy + Delta-G solvation = -28789.127402 eV Core-core repulsion = 24206.484320 eV Total energy + Delta-G solvation = -4582.643082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.32728 -48.32267 -41.43020 -40.87118 -39.49776 -38.18365 -35.86549 -34.46852 -34.11948 -32.11542 -31.10780 -29.75972 -27.52003 -26.91838 -26.78473 -24.36306 -23.86430 -22.64623 -21.20166 -20.05922 -19.73121 -19.24594 -18.93121 -18.89865 -18.20357 -17.30375 -17.11762 -16.88115 -16.39805 -15.96619 -15.86894 -15.67412 -15.55433 -15.11810 -14.93833 -14.82024 -14.77621 -14.65244 -14.42371 -14.32364 -14.00630 -13.76016 -13.67153 -13.39862 -13.37927 -12.96936 -12.76358 -12.72333 -12.43934 -12.22207 -12.15862 -11.99830 -11.34636 -10.92250 -10.70673 -10.63042 -10.21157 -10.00340 -9.43748 -8.93635 -8.27053 -6.44243 -0.27981 0.39599 0.78382 1.48546 1.50655 1.58007 1.61942 2.06519 2.33957 2.42461 2.53671 2.74674 2.94934 3.49537 3.57429 3.68654 3.75100 3.80222 3.81495 3.85467 4.15792 4.23798 4.29091 4.47419 4.53228 4.55916 4.62613 4.78067 4.86193 4.92168 4.94359 5.00795 5.14438 5.20422 5.26783 5.39554 5.55006 5.64607 5.73033 5.91690 6.06471 6.61177 6.93659 7.23943 7.30695 7.49580 8.78737 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.002257 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.665061 B =12402.985113 C =12703.963746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.220 3.780 10 O -0.586 6.586 11 C 0.107 3.893 12 N -0.632 5.632 13 C 0.548 3.452 14 O -0.578 6.578 15 C -0.212 4.212 16 C -0.010 4.010 17 C -0.101 4.101 18 C -0.065 4.065 19 C -0.209 4.209 20 C 0.103 3.897 21 O -0.331 6.331 22 C 0.405 3.595 23 F -0.207 7.207 24 F -0.211 7.211 25 C -0.161 4.161 26 C -0.021 4.021 27 C 0.086 3.914 28 H 0.277 0.723 29 H 0.389 0.611 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.142 0.858 36 H 0.237 0.763 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 -19.486 -4.837 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.168 4.168 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.592 4.592 8 H 0.091 0.909 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.016 4.016 12 N -0.364 5.364 13 C 0.342 3.658 14 O -0.462 6.462 15 C -0.233 4.233 16 C -0.030 4.030 17 C -0.101 4.101 18 C -0.083 4.083 19 C -0.227 4.227 20 C 0.059 3.941 21 O -0.249 6.249 22 C 0.316 3.684 23 F -0.189 7.189 24 F -0.193 7.193 25 C -0.180 4.180 26 C -0.039 4.039 27 C -0.037 4.037 28 H 0.087 0.913 29 H 0.245 0.755 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.199 0.801 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.252 0.748 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.026 -20.632 -4.293 21.171 hybrid contribution 0.291 1.597 -0.129 1.628 sum -1.735 -19.036 -4.423 19.620 Atomic orbital electron populations 1.69312 1.07133 1.29043 1.50270 1.25762 0.95781 1.02652 0.92594 0.85417 0.78261 0.77909 0.78911 1.19154 1.20723 1.20070 1.21634 0.94140 0.90626 1.52753 0.90900 1.19832 0.85438 0.91533 0.85332 1.86029 1.45712 1.48196 1.59923 1.23271 0.94536 0.91588 0.92218 1.49784 1.41918 1.05240 1.39485 1.18665 0.83738 0.80187 0.83189 1.90820 1.59375 1.40358 1.55639 1.23020 1.00146 0.99397 1.00713 1.22685 0.94063 0.89835 0.96372 1.19119 1.03287 0.94663 0.93078 1.21268 0.95717 0.90567 1.00735 1.21485 1.07725 1.01981 0.91550 1.19053 0.97764 0.88271 0.88979 1.86554 1.81645 1.20846 1.35871 1.24295 0.71958 0.84920 0.87201 1.93069 1.63019 1.87313 1.75481 1.93077 1.49917 1.95421 1.80923 1.20341 1.05785 0.91097 1.00784 1.20912 0.94113 0.96215 0.92687 1.24028 1.00556 0.77841 1.01262 0.91308 0.75500 0.93198 0.88329 0.83224 0.80069 0.82532 0.84034 0.74766 0.85035 0.87659 0.88967 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.75 11.01 21.45 0.24 -45.51 16 2 C 0.03 1.58 5.39 84.65 0.46 2.04 16 3 Si 0.97 38.86 29.54 68.60 2.03 40.89 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.55 -27.41 8.70 25.60 0.22 -27.19 16 8 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.22 10.55 1.58 -11.12 -0.02 10.54 16 10 O -0.59 -30.65 13.55 -148.98 -2.02 -32.67 16 11 C 0.11 4.74 8.02 83.18 0.67 5.41 16 12 N -0.63 -26.62 3.69 -863.50 -3.18 -29.81 16 13 C 0.55 21.88 7.11 86.33 0.61 22.49 16 14 O -0.58 -25.77 13.13 -4.43 -0.06 -25.83 16 15 C -0.21 -6.37 9.75 23.61 0.23 -6.14 16 16 C -0.01 -0.25 9.79 23.82 0.23 -0.02 16 17 C -0.10 -2.96 4.43 -20.14 -0.09 -3.05 16 18 C -0.07 -1.66 9.79 22.55 0.22 -1.44 16 19 C -0.21 -5.55 8.23 22.32 0.18 -5.37 16 20 C 0.10 2.97 6.49 22.65 0.15 3.11 16 21 O -0.33 -7.84 10.42 -90.63 -0.94 -8.79 16 22 C 0.41 6.23 5.98 113.37 0.68 6.91 16 23 F -0.21 -3.67 15.57 44.97 0.70 -2.97 16 24 F -0.21 -4.23 15.57 44.97 0.70 -3.53 16 25 C -0.16 -5.16 9.97 22.32 0.22 -4.93 16 26 C -0.02 -0.70 6.69 22.55 0.15 -0.55 16 27 C 0.09 3.61 7.76 83.26 0.65 4.26 16 28 H 0.28 13.10 8.31 -92.71 -0.77 12.32 16 29 H 0.39 20.58 6.32 -74.05 -0.47 20.11 16 30 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 4.00 8.10 -2.38 -0.02 3.98 16 32 H 0.15 3.84 7.98 -2.91 -0.02 3.81 16 33 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.14 3.30 5.07 -2.91 -0.01 3.29 16 36 H 0.24 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.11 3.85 7.26 -2.91 -0.02 3.83 16 39 H 0.09 3.62 8.10 -2.38 -0.02 3.60 16 40 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -65.57 351.01 2.66 -62.92 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.63 Total: 39.22 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 4.57 Total: 6.08 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.95 Total: -75.31 kcal Atomic # 8 Polarization: -64.27 SS G_CDS: -3.02 Total: -67.29 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.40 Total: -6.50 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -65.57 2.66 -62.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492685602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.439 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds