Wall clock time and date at job start Tue Mar 31 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47278 * 269.99908 * 3 2 1 5 5 H 1.48499 * 109.47374 * 30.00124 * 3 2 1 6 6 H 1.48502 * 109.46755 * 150.00103 * 3 2 1 7 7 C 1.38713 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 O 1.34786 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.35568 * 117.00358 * 185.05611 * 9 7 2 11 11 C 1.39182 * 119.89512 * 354.44174 * 10 9 7 12 12 C 1.37596 * 120.10030 * 179.97438 * 11 10 9 13 13 C 1.40030 * 119.89516 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.09794 * 180.02562 * 13 12 11 15 15 C 1.35015 * 119.99859 * 179.97438 * 14 13 12 16 16 C 1.46258 * 120.00185 * 179.72327 * 15 14 13 17 17 O 1.21726 * 119.99604 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00322 * 179.97438 * 16 15 14 19 19 C 1.47068 * 136.05358 * 359.63316 * 18 16 15 20 20 C 1.53763 * 87.88490 * 152.96189 * 19 18 16 21 21 O 1.42901 * 114.39242 * 272.67149 * 20 19 18 22 22 C 1.53003 * 114.08561 * 139.77736 * 20 19 18 23 23 F 1.39901 * 109.46982 * 206.56013 * 22 20 19 24 24 F 1.39902 * 109.47152 * 326.56110 * 22 20 19 25 25 C 1.47060 * 136.05919 * 180.02562 * 18 16 15 26 26 C 1.40020 * 119.80051 * 0.27434 * 13 12 11 27 27 C 1.37600 * 119.89650 * 359.41980 * 26 13 12 28 28 H 0.96997 * 119.99994 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.94871 * 359.97438 * 11 10 9 30 30 H 1.07996 * 120.05569 * 180.02562 * 12 11 10 31 31 H 1.07994 * 120.00006 * 359.97438 * 14 13 12 32 32 H 1.08007 * 120.00318 * 359.97438 * 15 14 13 33 33 H 1.08999 * 113.46550 * 267.69215 * 19 18 16 34 34 H 1.09001 * 113.47186 * 38.13391 * 19 18 16 35 35 H 0.96696 * 113.99696 * 273.59036 * 21 20 19 36 36 H 1.09001 * 109.46906 * 86.55833 * 22 20 19 37 37 H 1.09007 * 113.46530 * 321.86164 * 25 18 16 38 38 H 1.08999 * 113.47104 * 92.24379 * 25 18 16 39 39 H 1.08001 * 120.04947 * 179.73084 * 26 13 12 40 40 H 1.07995 * 119.95159 * 180.27213 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2013 0.0001 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5032 0.1075 11 6 3.4590 -3.4339 0.0942 12 6 4.2083 -4.5827 0.2030 13 6 3.5703 -5.8231 0.3268 14 6 4.3663 -7.0529 0.4439 15 6 3.7490 -8.2477 0.5637 16 6 4.5410 -9.4723 0.6742 17 8 5.7568 -9.4142 0.6586 18 7 3.9249 -10.6649 0.7943 19 6 2.5332 -11.1360 0.8587 20 6 3.0187 -12.4729 0.2744 21 8 3.0539 -12.5148 -1.1536 22 6 2.3625 -13.7040 0.9027 23 9 3.2250 -14.7999 0.7915 24 9 2.0986 -13.4534 2.2536 25 6 4.3483 -12.0671 0.9256 26 6 2.1716 -5.8885 0.3334 27 6 1.4305 -4.7337 0.2304 28 1 -0.4850 0.8400 -0.0004 29 1 3.9502 -2.4769 -0.0018 30 1 5.2869 -4.5280 0.1930 31 1 5.4449 -7.0010 0.4342 32 1 2.6702 -8.2997 0.5739 33 1 2.1501 -11.2204 1.8756 34 1 1.8593 -10.5909 0.1977 35 1 2.2147 -12.7706 -1.5603 36 1 1.4288 -13.9223 0.3845 37 1 5.2211 -12.3153 0.3216 38 1 4.4444 -12.3965 1.9602 39 1 1.6753 -6.8434 0.4244 40 1 0.3517 -4.7828 0.2399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493738799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:28 Heat of formation + Delta-G solvation = -119.957601 kcal Electronic energy + Delta-G solvation = -27499.942802 eV Core-core repulsion = 22918.617903 eV Total energy + Delta-G solvation = -4581.324899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.60965 -47.59632 -40.85414 -39.24646 -38.42220 -36.89580 -35.88550 -33.23670 -32.32982 -30.60234 -30.43790 -28.42533 -26.81594 -26.57559 -25.62590 -23.13005 -22.19547 -21.44395 -20.21560 -19.20391 -18.45807 -18.16691 -17.96400 -17.81827 -17.33136 -17.06626 -16.22724 -15.71776 -15.08704 -15.03483 -14.77131 -14.62593 -14.43298 -14.30102 -13.98001 -13.86272 -13.84635 -13.63647 -13.41299 -13.22535 -13.05446 -12.95989 -12.62887 -12.31135 -11.95259 -11.79864 -11.75452 -11.21565 -11.14745 -11.10351 -10.83235 -10.70352 -10.55895 -9.84563 -9.64442 -9.52129 -9.01542 -8.85817 -8.41166 -7.14694 -6.67628 -4.22384 1.01850 2.10860 2.44386 2.49519 2.92138 2.99162 3.02526 3.03538 3.08260 3.40403 3.49492 3.63061 3.80317 3.82855 4.34150 4.47202 4.48544 4.71515 4.89794 4.90023 4.93474 5.01578 5.18663 5.21640 5.25764 5.41316 5.51643 5.63274 5.65370 5.98799 6.08397 6.42926 6.47482 6.57629 6.76023 6.79163 6.89344 7.10141 7.20784 7.25302 7.51554 7.60962 7.77730 8.19074 8.77139 9.43709 10.48897 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029032 B = 0.001757 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.228992 B =15931.910404 C =16516.054551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.034 4.034 13 C -0.200 4.200 14 C 0.042 3.958 15 C -0.277 4.277 16 C 0.592 3.408 17 O -0.551 6.551 18 N -0.639 5.639 19 C 0.085 3.915 20 C 0.035 3.965 21 O -0.506 6.506 22 C 0.256 3.744 23 F -0.193 7.193 24 F -0.192 7.192 25 C 0.122 3.878 26 C -0.042 4.042 27 C -0.200 4.200 28 H 0.274 0.726 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.386 0.614 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -23.802 0.968 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.062 6.062 10 C 0.111 3.889 11 C -0.261 4.261 12 C -0.052 4.052 13 C -0.201 4.201 14 C 0.022 3.978 15 C -0.298 4.298 16 C 0.388 3.612 17 O -0.430 6.430 18 N -0.374 5.374 19 C -0.039 4.039 20 C -0.009 4.009 21 O -0.312 6.312 22 C 0.201 3.799 23 F -0.174 7.174 24 F -0.173 7.173 25 C -0.001 4.001 26 C -0.060 4.060 27 C -0.219 4.219 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.236 0.764 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.142 -23.107 1.035 23.229 hybrid contribution -0.231 0.492 0.001 0.544 sum 1.911 -22.615 1.036 22.719 Atomic orbital electron populations 1.70013 1.06145 1.28299 1.43947 1.25404 0.95919 0.99178 0.95991 0.85639 0.79015 0.79479 0.78959 1.19619 1.20030 1.18928 1.21483 0.92123 0.80542 1.52690 0.88507 1.83901 1.34993 1.11810 1.75532 1.19613 0.90328 0.87879 0.91118 1.21104 0.93639 0.99145 1.12238 1.20993 0.98634 0.91352 0.94218 1.18438 0.92966 0.92233 1.16426 1.22296 0.99259 0.90930 0.85328 1.22259 0.99607 0.91187 1.16750 1.17950 0.86966 0.81450 0.74853 1.90802 1.14056 1.85998 1.52181 1.49084 1.08366 1.05443 1.74546 1.23665 0.86645 0.91095 1.02486 1.23640 1.00429 0.92754 0.84073 1.86726 1.38839 1.91322 1.14278 1.22213 0.93385 0.84338 0.79969 1.93040 1.72784 1.55756 1.95853 1.93017 1.94517 1.94288 1.35492 1.22875 0.96226 0.80433 1.00551 1.20860 0.92632 0.96835 0.95698 1.20141 0.99756 0.90123 1.11855 0.91571 0.85074 0.86754 0.85854 0.85975 0.87668 0.88670 0.76442 0.86287 0.88774 0.87918 0.86529 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.65 13.67 55.48 0.76 -22.89 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.95 19.40 29.55 -169.99 -5.02 14.37 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.39 -10.36 9.48 30.91 0.29 -10.07 16 8 H 0.10 2.35 5.18 -52.48 -0.27 2.07 16 9 O -0.16 -4.35 9.74 0.73 0.01 -4.34 16 10 C 0.17 3.81 6.66 -38.88 -0.26 3.55 16 11 C -0.24 -4.97 9.14 -39.47 -0.36 -5.34 16 12 C -0.03 -0.60 9.78 -39.14 -0.38 -0.98 16 13 C -0.20 -3.40 5.87 -105.02 -0.62 -4.02 16 14 C 0.04 0.65 9.45 -37.19 -0.35 0.29 16 15 C -0.28 -3.96 9.25 -37.51 -0.35 -4.31 16 16 C 0.59 9.05 7.99 -13.04 -0.10 8.95 16 17 O -0.55 -10.37 17.01 5.17 0.09 -10.28 16 18 N -0.64 -7.46 3.69 -186.74 -0.69 -8.15 16 19 C 0.09 0.61 7.62 -8.37 -0.06 0.54 16 20 C 0.04 0.22 1.77 -89.96 -0.16 0.06 16 21 O -0.51 -3.37 13.57 -35.23 -0.48 -3.85 16 22 C 0.26 1.15 5.13 37.16 0.19 1.34 16 23 F -0.19 -1.37 17.21 2.25 0.04 -1.33 16 24 F -0.19 -1.18 15.72 2.25 0.04 -1.14 16 25 C 0.12 1.16 7.85 -8.50 -0.07 1.09 16 26 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 27 C -0.20 -3.94 9.97 -39.47 -0.39 -4.33 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 29 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.12 1.90 7.52 -52.49 -0.39 1.51 16 32 H 0.12 1.50 5.97 -52.48 -0.31 1.19 16 33 H 0.11 0.61 7.06 -51.93 -0.37 0.25 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.39 0.48 9.04 45.56 0.41 0.90 16 36 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.12 1.60 6.16 -52.49 -0.32 1.28 16 40 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -34.24 359.66 -6.14 -40.38 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.21 Total: 5.09 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.09 Total: -13.30 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.07 Total: -31.04 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.38 Total: -18.47 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.24 -6.14 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493738799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.574 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds