Wall clock time and date at job start Tue Mar 31 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47289 * 264.76174 * 3 2 1 5 5 H 1.48494 * 109.47420 * 24.76707 * 3 2 1 6 6 H 1.48501 * 109.46722 * 144.76626 * 3 2 1 7 7 C 1.37870 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00126 * 354.79474 * 7 2 1 9 9 C 1.50693 * 120.00206 * 174.79361 * 7 2 1 10 10 C 1.53002 * 115.55254 * 89.70361 * 9 7 2 11 11 S 1.81405 * 109.47061 * 39.26376 * 10 9 7 12 12 O 1.42100 * 110.54080 * 284.02667 * 11 10 9 13 13 O 1.42102 * 110.53957 * 60.77441 * 11 10 9 14 14 N 1.65598 * 104.44784 * 172.40149 * 11 10 9 15 15 C 1.46497 * 120.00116 * 65.00565 * 14 11 10 16 16 H 1.09002 * 115.55198 * 359.27515 * 15 14 11 17 17 C 1.52995 * 117.49766 * 213.60732 * 15 14 11 18 18 C 1.52999 * 60.00111 * 252.50630 * 17 15 14 19 19 H 1.08999 * 117.49950 * 107.48647 * 18 17 15 20 20 C 1.50703 * 117.49767 * 252.51262 * 18 17 15 21 21 C 1.38271 * 119.98509 * 188.62216 * 20 18 17 22 22 C 1.38220 * 120.05040 * 180.02562 * 21 20 18 23 23 C 1.38221 * 120.02293 * 359.97438 * 22 21 20 24 24 C 1.38435 * 119.97827 * 0.02562 * 23 22 21 25 25 F 1.35096 * 120.02575 * 180.02562 * 24 23 22 26 26 C 1.38175 * 119.98934 * 8.34315 * 20 18 17 27 27 C 1.53009 * 117.52087 * 235.40290 * 9 7 2 28 28 C 1.52999 * 117.50170 * 304.03157 * 9 7 2 29 29 H 0.97002 * 119.99658 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47363 * 159.26572 * 10 9 7 31 31 H 1.09001 * 109.46941 * 279.26728 * 10 9 7 32 32 H 0.96998 * 119.99834 * 244.99467 * 14 11 10 33 33 H 1.09005 * 117.50228 * 359.97438 * 17 15 14 34 34 H 1.09004 * 117.50299 * 145.02111 * 17 15 14 35 35 H 1.07996 * 119.97167 * 0.02562 * 21 20 18 36 36 H 1.08002 * 119.98782 * 179.97438 * 22 21 20 37 37 H 1.08007 * 120.00713 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.01084 * 0.02562 * 26 20 18 39 39 H 1.08993 * 117.49844 * 214.97130 * 27 9 7 40 40 H 1.08997 * 117.49748 * 359.97438 * 27 9 7 41 41 H 1.09000 * 117.49493 * 359.97438 * 28 9 7 42 42 H 1.09003 * 117.50201 * 144.99499 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6073 1.9825 -1.3942 5 1 1.3958 2.6820 0.5865 6 1 3.4870 1.4745 0.8077 7 6 2.0045 -1.1940 -0.0005 8 1 1.4678 -2.1275 0.0839 9 6 3.5068 -1.1968 -0.1190 10 6 4.2731 -1.1288 1.2035 11 16 3.4322 -2.1523 2.4430 12 8 2.2676 -1.4958 2.9246 13 8 3.3875 -3.5088 2.0222 14 7 4.4622 -2.1605 3.7397 15 6 4.7398 -0.9170 4.4626 16 1 4.2398 -0.0280 4.0781 17 6 6.1404 -0.7403 5.0523 18 6 4.9504 -1.0109 5.9751 19 1 4.8824 -1.9981 6.4323 20 6 4.4505 0.1328 6.8196 21 6 3.5002 -0.0944 7.7979 22 6 3.0404 0.9536 8.5729 23 6 3.5306 2.2301 8.3710 24 6 4.4821 2.4588 7.3918 25 9 4.9623 3.7059 7.1940 26 6 4.9462 1.4070 6.6199 27 6 4.1251 -2.0179 -1.2523 28 6 4.1214 -0.4898 -1.3287 29 1 -0.4850 0.8401 0.0004 30 1 5.2877 -1.4984 1.0550 31 1 4.3097 -0.0958 1.5496 32 1 4.8816 -2.9888 4.0206 33 1 6.8553 -1.5495 4.9028 34 1 6.5618 0.2650 5.0562 35 1 3.1169 -1.0916 7.9566 36 1 2.2977 0.7751 9.3365 37 1 3.1715 3.0488 8.9770 38 1 5.6915 1.5834 5.8585 39 1 5.0778 -2.5096 -1.0557 40 1 3.4453 -2.5567 -1.9123 41 1 3.4391 -0.0231 -2.0391 42 1 5.0717 0.0237 -1.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515461975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:05 Heat of formation + Delta-G solvation = -37.602770 kcal Electronic energy + Delta-G solvation = -27239.034379 eV Core-core repulsion = 23227.493830 eV Total energy + Delta-G solvation = -4011.540549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.04135 -39.84191 -37.53455 -37.12880 -36.22698 -35.05059 -32.80212 -32.19418 -30.71955 -30.23361 -28.56304 -25.55905 -24.36125 -22.78104 -22.16262 -21.73454 -20.83257 -19.72767 -18.79695 -17.78311 -16.99076 -16.81608 -16.44061 -16.30097 -16.04895 -15.71825 -15.25983 -15.06772 -14.67268 -14.32062 -14.15058 -13.87201 -13.49815 -13.03603 -12.89445 -12.85647 -12.68660 -12.61158 -12.34494 -11.97252 -11.81863 -11.59378 -11.32712 -11.26417 -11.16606 -11.07145 -10.79535 -10.64203 -10.61604 -10.37021 -10.11244 -9.79269 -9.41768 -9.13767 -9.01364 -8.68813 -8.63157 -8.46163 -6.21163 -4.33156 0.87727 0.99843 1.02614 3.20949 3.24676 3.28506 3.30489 3.33754 3.80707 4.02769 4.31682 4.33736 4.45538 4.49877 4.60429 4.70420 4.75910 4.81097 4.92926 4.96410 5.03348 5.07610 5.12701 5.16972 5.47489 5.55534 5.61572 5.71565 5.77351 5.86418 5.92733 5.96309 6.02893 6.10538 6.16268 6.19252 6.31021 6.39802 6.57985 6.69245 6.80895 7.04605 7.09782 7.56576 8.31825 8.82411 9.40827 10.90304 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.003861 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.201694 B = 7250.442012 C = 8110.789160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.103 3.897 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.088 0.912 9 C 0.008 3.992 10 C -0.585 4.585 11 S 2.627 3.373 12 O -0.929 6.929 13 O -0.963 6.963 14 N -1.106 6.106 15 C 0.110 3.890 16 H 0.138 0.862 17 C -0.185 4.185 18 C -0.129 4.129 19 H 0.123 0.877 20 C -0.017 4.017 21 C -0.120 4.120 22 C -0.086 4.086 23 C -0.161 4.161 24 C 0.101 3.899 25 F -0.141 7.141 26 C -0.159 4.159 27 C -0.172 4.172 28 C -0.189 4.189 29 H 0.269 0.731 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.411 0.589 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.272 1.649 15.105 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.105 4.105 3 Si 0.706 3.294 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.106 0.894 9 C 0.006 3.994 10 C -0.716 4.716 11 S 2.722 3.278 12 O -0.919 6.919 13 O -0.954 6.954 14 N -0.857 5.857 15 C 0.000 4.000 16 H 0.156 0.844 17 C -0.224 4.224 18 C -0.150 4.150 19 H 0.141 0.859 20 C -0.018 4.018 21 C -0.138 4.138 22 C -0.104 4.104 23 C -0.180 4.180 24 C 0.082 3.918 25 F -0.119 7.119 26 C -0.177 4.177 27 C -0.209 4.209 28 C -0.228 4.228 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.244 0.756 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.147 1.506 14.997 19.358 hybrid contribution 1.288 1.303 -0.103 1.835 sum 13.435 2.809 14.894 20.254 Atomic orbital electron populations 1.69870 1.06539 1.27634 1.46447 1.24916 0.94469 0.98993 0.92080 0.86922 0.80260 0.83410 0.78843 1.19823 1.21537 1.18656 1.20417 0.86203 0.95648 1.55276 0.89417 1.18743 0.94524 1.02376 0.83797 1.30342 1.10694 1.15058 1.15467 1.04705 0.74186 0.75318 0.73623 1.93590 1.43395 1.77065 1.77806 1.93513 1.86134 1.33556 1.82180 1.55900 1.67520 1.14138 1.48152 1.21442 0.98747 0.88861 0.90912 0.84418 1.23673 0.91743 1.04031 1.02935 1.21579 1.03127 0.98206 0.92056 0.85890 1.18928 0.95300 0.92485 0.95073 1.21080 0.97036 1.00008 0.95713 1.21006 0.98792 0.91634 0.99016 1.21149 0.98698 0.98798 0.99322 1.17644 0.96696 0.79568 0.97870 1.91500 1.86969 1.39040 1.94438 1.21053 1.03007 0.91924 1.01738 1.22945 1.00961 0.92946 1.04068 1.22988 1.01192 0.95096 1.03480 0.92063 0.87295 0.86021 0.75600 0.87488 0.87502 0.85046 0.84839 0.84841 0.84469 0.90565 0.88766 0.88868 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.49 13.96 55.43 0.77 -25.71 16 2 C 0.10 2.94 5.47 -17.82 -0.10 2.84 16 3 Si 0.88 21.33 25.13 -169.99 -4.27 17.06 16 4 H -0.27 -6.34 6.93 56.52 0.39 -5.94 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -5.79 5.45 56.52 0.31 -5.48 16 7 C -0.54 -14.98 7.53 -34.45 -0.26 -15.24 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 C 0.01 0.19 1.14 -155.66 -0.18 0.01 16 10 C -0.58 -11.14 6.04 37.16 0.22 -10.91 16 11 S 2.63 52.48 4.56 -107.50 -0.49 51.99 16 12 O -0.93 -22.60 17.05 -57.54 -0.98 -23.59 16 13 O -0.96 -21.53 18.08 -57.54 -1.04 -22.57 16 14 N -1.11 -15.33 5.93 -4.89 -0.03 -15.36 16 15 C 0.11 1.36 5.98 -67.93 -0.41 0.96 16 16 H 0.14 1.84 8.11 -51.93 -0.42 1.42 16 17 C -0.18 -1.65 9.78 -26.73 -0.26 -1.91 16 18 C -0.13 -1.32 5.97 -91.77 -0.55 -1.87 16 19 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 20 C -0.02 -0.19 5.61 -104.63 -0.59 -0.78 16 21 C -0.12 -1.22 9.74 -39.58 -0.39 -1.60 16 22 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 23 C -0.16 -1.61 10.03 -39.51 -0.40 -2.00 16 24 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 25 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 26 C -0.16 -1.75 9.28 -39.52 -0.37 -2.12 16 27 C -0.17 -3.46 9.88 -26.73 -0.26 -3.72 16 28 C -0.19 -3.88 7.65 -26.73 -0.20 -4.09 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.11 1.64 7.94 -51.93 -0.41 1.22 16 31 H 0.12 2.21 6.31 -51.92 -0.33 1.88 16 32 H 0.41 4.57 8.92 -34.47 -0.31 4.27 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.83 6.17 -51.93 -0.32 0.51 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.14 1.31 6.01 -52.49 -0.32 0.99 16 39 H 0.08 1.30 8.08 -51.93 -0.42 0.89 16 40 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 41 H 0.09 2.01 7.09 -51.93 -0.37 1.64 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -35.13 364.63 -10.43 -45.56 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.51 Total: 9.57 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: -4.42 Total: -40.76 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.74 Total: -41.07 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -2.02 Total: -46.16 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.27 Total: 17.06 kcal Atomic # 16 Polarization: 52.48 SS G_CDS: -0.49 Total: 51.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.13 -10.43 -45.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515461975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.956 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds