Wall clock time and date at job start Tue Mar 31 2020 22:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47289 * 264.76174 * 3 2 1 5 5 H 1.48494 * 109.47420 * 24.76707 * 3 2 1 6 6 H 1.48501 * 109.46722 * 144.76626 * 3 2 1 7 7 C 1.37870 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00126 * 354.79474 * 7 2 1 9 9 C 1.50693 * 120.00206 * 174.79361 * 7 2 1 10 10 C 1.53002 * 115.55254 * 89.70361 * 9 7 2 11 11 S 1.81405 * 109.47061 * 39.26376 * 10 9 7 12 12 O 1.42100 * 110.54080 * 284.02667 * 11 10 9 13 13 O 1.42102 * 110.53957 * 60.77441 * 11 10 9 14 14 N 1.65598 * 104.44784 * 172.40149 * 11 10 9 15 15 C 1.46497 * 120.00116 * 65.00565 * 14 11 10 16 16 H 1.09002 * 115.55198 * 359.27515 * 15 14 11 17 17 C 1.52995 * 117.49766 * 213.60732 * 15 14 11 18 18 C 1.52999 * 60.00111 * 252.50630 * 17 15 14 19 19 H 1.08999 * 117.49950 * 107.48647 * 18 17 15 20 20 C 1.50703 * 117.49767 * 252.51262 * 18 17 15 21 21 C 1.38271 * 119.98509 * 188.62216 * 20 18 17 22 22 C 1.38220 * 120.05040 * 180.02562 * 21 20 18 23 23 C 1.38221 * 120.02293 * 359.97438 * 22 21 20 24 24 C 1.38435 * 119.97827 * 0.02562 * 23 22 21 25 25 F 1.35096 * 120.02575 * 180.02562 * 24 23 22 26 26 C 1.38175 * 119.98934 * 8.34315 * 20 18 17 27 27 C 1.53009 * 117.52087 * 235.40290 * 9 7 2 28 28 C 1.52999 * 117.50170 * 304.03157 * 9 7 2 29 29 H 0.97002 * 119.99658 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47363 * 159.26572 * 10 9 7 31 31 H 1.09001 * 109.46941 * 279.26728 * 10 9 7 32 32 H 0.96998 * 119.99834 * 244.99467 * 14 11 10 33 33 H 1.09005 * 117.50228 * 359.97438 * 17 15 14 34 34 H 1.09004 * 117.50299 * 145.02111 * 17 15 14 35 35 H 1.07996 * 119.97167 * 0.02562 * 21 20 18 36 36 H 1.08002 * 119.98782 * 179.97438 * 22 21 20 37 37 H 1.08007 * 120.00713 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.01084 * 0.02562 * 26 20 18 39 39 H 1.08993 * 117.49844 * 214.97130 * 27 9 7 40 40 H 1.08997 * 117.49748 * 359.97438 * 27 9 7 41 41 H 1.09000 * 117.49493 * 359.97438 * 28 9 7 42 42 H 1.09003 * 117.50201 * 144.99499 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6073 1.9825 -1.3942 5 1 1.3958 2.6820 0.5865 6 1 3.4870 1.4745 0.8077 7 6 2.0045 -1.1940 -0.0005 8 1 1.4678 -2.1275 0.0839 9 6 3.5068 -1.1968 -0.1190 10 6 4.2731 -1.1288 1.2035 11 16 3.4322 -2.1523 2.4430 12 8 2.2676 -1.4958 2.9246 13 8 3.3875 -3.5088 2.0222 14 7 4.4622 -2.1605 3.7397 15 6 4.7398 -0.9170 4.4626 16 1 4.2398 -0.0280 4.0781 17 6 6.1404 -0.7403 5.0523 18 6 4.9504 -1.0109 5.9751 19 1 4.8824 -1.9981 6.4323 20 6 4.4505 0.1328 6.8196 21 6 3.5002 -0.0944 7.7979 22 6 3.0404 0.9536 8.5729 23 6 3.5306 2.2301 8.3710 24 6 4.4821 2.4588 7.3918 25 9 4.9623 3.7059 7.1940 26 6 4.9462 1.4070 6.6199 27 6 4.1251 -2.0179 -1.2523 28 6 4.1214 -0.4898 -1.3287 29 1 -0.4850 0.8401 0.0004 30 1 5.2877 -1.4984 1.0550 31 1 4.3097 -0.0958 1.5496 32 1 4.8816 -2.9888 4.0206 33 1 6.8553 -1.5495 4.9028 34 1 6.5618 0.2650 5.0562 35 1 3.1169 -1.0916 7.9566 36 1 2.2977 0.7751 9.3365 37 1 3.1715 3.0488 8.9770 38 1 5.6915 1.5834 5.8585 39 1 5.0778 -2.5096 -1.0557 40 1 3.4453 -2.5567 -1.9123 41 1 3.4391 -0.0231 -2.0391 42 1 5.0717 0.0237 -1.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515461975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:04 Heat of formation + Delta-G solvation = -62.605949 kcal Electronic energy + Delta-G solvation = -27240.118598 eV Core-core repulsion = 23227.493830 eV Total energy + Delta-G solvation = -4012.624768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90674 -40.61924 -38.82129 -38.39410 -37.88060 -36.73866 -34.33356 -33.79567 -31.48615 -31.05940 -30.12021 -27.62310 -25.11031 -23.59586 -23.32825 -23.02635 -21.65601 -21.35604 -20.34401 -18.92206 -18.54218 -18.05818 -17.64258 -17.15302 -17.05459 -16.95702 -16.73417 -16.58649 -15.95092 -15.59690 -15.32156 -14.87468 -14.85304 -14.54243 -14.39544 -14.26529 -13.72418 -13.62909 -13.28842 -13.18887 -13.03326 -12.92515 -12.87946 -12.74965 -12.58858 -12.33925 -12.24938 -12.08665 -12.04986 -11.81181 -11.73811 -11.43397 -10.90931 -10.72855 -10.39825 -10.18828 -9.81479 -9.41284 -8.36906 -6.52989 -0.56163 0.16054 0.23297 1.30589 1.33591 1.44182 2.01226 2.31774 2.47314 2.89899 2.97836 3.05423 3.17172 3.23870 3.43940 3.61009 3.75459 3.77764 3.80274 3.97235 4.04091 4.12882 4.20992 4.25629 4.36051 4.36526 4.45585 4.48565 4.63427 4.82284 4.87237 4.90084 4.97048 5.06802 5.11548 5.17987 5.19548 5.24486 5.38647 5.48111 5.54554 5.61517 5.93767 6.12997 6.14965 6.61670 7.24572 8.79602 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.003861 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.201694 B = 7250.442012 C = 8110.789160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.040 3.960 3 Si 0.927 3.073 4 H -0.251 1.251 5 H -0.298 1.298 6 H -0.220 1.220 7 C -0.538 4.538 8 H 0.029 0.971 9 C -0.031 4.031 10 C -0.573 4.573 11 S 2.627 3.373 12 O -0.989 6.989 13 O -1.000 7.000 14 N -1.085 6.085 15 C 0.072 3.928 16 H 0.123 0.877 17 C -0.151 4.151 18 C -0.127 4.127 19 H 0.136 0.864 20 C -0.033 4.033 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.165 4.165 24 C 0.078 3.922 25 F -0.150 7.150 26 C -0.166 4.166 27 C -0.164 4.164 28 C -0.174 4.174 29 H 0.269 0.731 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.426 0.574 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.569 2.595 15.914 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.176 1.176 5 H -0.225 1.225 6 H -0.143 1.143 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.034 4.034 10 C -0.706 4.706 11 S 2.725 3.275 12 O -0.979 6.979 13 O -0.991 6.991 14 N -0.842 5.842 15 C -0.036 4.036 16 H 0.141 0.859 17 C -0.190 4.190 18 C -0.147 4.147 19 H 0.154 0.846 20 C -0.033 4.033 21 C -0.150 4.150 22 C -0.106 4.106 23 C -0.184 4.184 24 C 0.059 3.941 25 F -0.128 7.128 26 C -0.184 4.184 27 C -0.201 4.201 28 C -0.213 4.213 29 H 0.078 0.922 30 H 0.180 0.820 31 H 0.154 0.846 32 H 0.262 0.738 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.469 2.410 15.816 22.960 hybrid contribution -0.088 0.891 -0.300 0.944 sum 16.381 3.300 15.517 22.803 Atomic orbital electron populations 1.70042 1.08860 1.28563 1.49466 1.25907 0.95163 1.03308 0.91692 0.86108 0.80375 0.77930 0.80594 1.17565 1.22507 1.14297 1.20531 0.89566 0.93290 1.54116 0.95264 1.18706 0.91860 1.06252 0.86567 1.30155 1.12424 1.15717 1.12275 1.04190 0.74314 0.74403 0.74583 1.93523 1.47361 1.77841 1.79131 1.93453 1.86993 1.35446 1.83190 1.55137 1.66648 1.15714 1.46690 1.21621 1.02210 0.87499 0.92314 0.85905 1.23818 0.90313 1.05765 0.99117 1.21677 1.03744 0.98684 0.90640 0.84604 1.19121 0.95827 0.92750 0.95630 1.21408 0.96865 1.00991 0.95700 1.21341 0.98907 0.91089 0.99271 1.21441 0.98175 0.99735 0.99048 1.17935 0.97745 0.79488 0.98972 1.91472 1.87205 1.39558 1.94605 1.21237 1.03368 0.91880 1.01965 1.23068 1.02007 0.93311 1.01750 1.23075 1.02142 0.95432 1.00604 0.92203 0.82036 0.84615 0.73807 0.85126 0.85985 0.83837 0.82304 0.83218 0.83250 0.86434 0.90489 0.90538 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.04 2.38 5.47 84.65 0.46 2.85 16 3 Si 0.93 43.03 25.13 68.60 1.72 44.75 16 4 H -0.25 -10.74 6.93 99.48 0.69 -10.05 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.22 -8.65 5.45 99.48 0.54 -8.10 16 7 C -0.54 -30.99 7.53 25.60 0.19 -30.79 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 9 C -0.03 -1.38 1.14 -52.93 -0.06 -1.44 16 10 C -0.57 -19.90 6.04 71.98 0.43 -19.47 16 11 S 2.63 104.31 4.56 -56.49 -0.26 104.05 16 12 O -0.99 -50.07 17.05 -127.65 -2.18 -52.24 16 13 O -1.00 -45.34 18.08 -127.65 -2.31 -47.64 16 14 N -1.08 -27.92 5.93 -169.40 -1.00 -28.92 16 15 C 0.07 1.61 5.98 44.99 0.27 1.87 16 16 H 0.12 3.11 8.11 -2.39 -0.02 3.09 16 17 C -0.15 -2.06 9.78 30.59 0.30 -1.76 16 18 C -0.13 -2.27 5.97 -11.54 -0.07 -2.33 16 19 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 20 C -0.03 -0.66 5.61 -19.87 -0.11 -0.77 16 21 C -0.13 -2.47 9.74 22.27 0.22 -2.25 16 22 C -0.09 -1.49 10.04 22.26 0.22 -1.26 16 23 C -0.17 -3.08 10.03 22.31 0.22 -2.86 16 24 C 0.08 1.70 7.30 22.37 0.16 1.86 16 25 F -0.15 -3.53 17.27 44.97 0.78 -2.76 16 26 C -0.17 -3.39 9.28 22.31 0.21 -3.18 16 27 C -0.16 -6.14 9.88 30.60 0.30 -5.84 16 28 C -0.17 -6.46 7.65 30.59 0.23 -6.23 16 29 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 30 H 0.16 3.87 7.94 -2.39 -0.02 3.85 16 31 H 0.14 4.33 6.31 -2.39 -0.02 4.32 16 32 H 0.43 8.43 8.92 -96.75 -0.86 7.57 16 33 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.12 1.33 6.17 -2.38 -0.01 1.32 16 35 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.15 2.50 6.01 -2.91 -0.02 2.48 16 39 H 0.12 3.42 8.08 -2.39 -0.02 3.40 16 40 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 3.09 7.09 -2.39 -0.02 3.08 16 42 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -83.61 364.63 0.05 -83.56 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.01 Total: 30.55 kcal Atomic # 6 Polarization: -74.59 SS G_CDS: 2.99 Total: -71.60 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -0.70 Total: -88.66 kcal Atomic # 8 Polarization: -95.40 SS G_CDS: -4.48 Total: -99.89 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.72 Total: 44.75 kcal Atomic # 16 Polarization: 104.31 SS G_CDS: -0.26 Total: 104.05 kcal Total: -83.61 0.05 -83.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515461975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.950 kcal (2) G-P(sol) polarization free energy of solvation -83.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds