Wall clock time and date at job start Tue Mar 31 2020 22:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86805 * 119.99703 * 2 1 4 4 H 1.48509 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47266 * 300.00220 * 3 2 1 6 6 H 1.48505 * 109.47143 * 60.00517 * 3 2 1 7 7 C 1.39892 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99725 * 174.26660 * 7 2 1 9 9 C 1.41148 * 119.99652 * 354.26775 * 7 2 1 10 10 C 1.40888 * 120.15585 * 145.97211 * 9 7 2 11 11 C 1.36380 * 119.84884 * 180.02562 * 10 9 7 12 12 C 1.39460 * 120.18177 * 0.02562 * 11 10 9 13 13 N 1.39268 * 119.84287 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00034 * 33.77042 * 13 12 11 15 15 O 1.21586 * 120.00354 * 5.96735 * 14 13 12 16 16 N 1.34779 * 120.00378 * 185.96596 * 14 13 12 17 17 C 1.46493 * 120.00424 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47458 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.50661 * 64.99990 * 18 17 16 20 20 C 1.53094 * 109.51091 * 185.09236 * 18 17 16 21 21 O 1.43012 * 109.26254 * 176.78478 * 20 18 17 22 22 C 1.43022 * 113.73463 * 301.32600 * 21 20 18 23 23 C 1.53102 * 109.25760 * 58.67149 * 22 21 20 24 24 N 1.47013 * 109.29276 * 303.17076 * 23 22 21 25 25 C 1.39589 * 120.31998 * 359.74447 * 12 11 10 26 26 Cl 1.73601 * 119.92809 * 180.25818 * 25 12 11 27 27 C 1.36474 * 120.14394 * 0.50829 * 25 12 11 28 28 H 0.96995 * 119.99614 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.07760 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.90984 * 180.02562 * 11 10 9 31 31 H 0.97005 * 120.00023 * 213.77153 * 13 12 11 32 32 H 0.97003 * 119.99613 * 0.02562 * 16 14 13 33 33 H 1.08996 * 109.47760 * 300.00313 * 17 16 14 34 34 H 1.08998 * 109.46742 * 60.00455 * 17 16 14 35 35 H 1.09003 * 109.50488 * 296.71612 * 20 18 17 36 36 H 1.08998 * 109.50861 * 56.80332 * 20 18 17 37 37 H 1.09007 * 109.50648 * 178.60186 * 22 21 20 38 38 H 1.08996 * 109.50648 * 298.73339 * 22 21 20 39 39 H 1.09004 * 109.50832 * 63.08578 * 23 22 21 40 40 H 1.09000 * 109.50580 * 183.17072 * 23 22 21 41 41 H 1.00900 * 110.96342 * 294.79933 * 24 23 22 42 42 H 1.08006 * 120.08978 * 179.76817 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7029 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8841 2.3965 1.2126 7 6 2.0084 -1.2115 -0.0005 8 1 3.0843 -1.2136 -0.0940 9 6 1.3079 -2.4308 0.1210 10 6 1.7699 -3.5820 -0.5470 11 6 1.0879 -4.7569 -0.4256 12 6 -0.0646 -4.8209 0.3570 13 7 -0.7552 -6.0244 0.4764 14 6 -0.0812 -7.1914 0.4715 15 8 1.1346 -7.1913 0.4722 16 7 -0.7549 -8.3587 0.4658 17 6 -0.0223 -9.6273 0.4598 18 6 -1.0163 -10.7904 0.4534 19 1 -1.5823 -10.7803 -0.4780 20 6 -0.2560 -12.1135 0.5753 21 8 -1.1931 -13.1916 0.6443 22 6 -2.1060 -13.0915 1.7407 23 6 -2.8852 -11.7782 1.6306 24 7 -1.9389 -10.6539 1.5900 25 6 -0.5262 -3.6859 1.0258 26 17 -1.9583 -3.7788 2.0027 27 6 0.1431 -2.5023 0.9095 28 1 -0.4849 0.8400 0.0004 29 1 2.6620 -3.5344 -1.1538 30 1 1.4414 -5.6400 -0.9369 31 1 -1.7214 -6.0226 0.5632 32 1 -1.7249 -8.3588 0.4649 33 1 0.6046 -9.6808 -0.4302 34 1 0.6041 -9.6892 1.3497 35 1 0.3869 -12.2454 -0.2951 36 1 0.3531 -12.1015 1.4792 37 1 -2.8013 -13.9306 1.7132 38 1 -1.5514 -13.1082 2.6788 39 1 -3.4818 -11.7842 0.7183 40 1 -3.5418 -11.6711 2.4941 41 1 -1.4327 -10.5765 2.4594 42 1 -0.2169 -1.6238 1.4244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528692014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:29 Heat of formation + Delta-G solvation = -56.933806 kcal Electronic energy + Delta-G solvation = -26278.660395 eV Core-core repulsion = 22284.157844 eV Total energy + Delta-G solvation = -3994.502551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31528 -39.68270 -37.69809 -35.86558 -35.48377 -34.42825 -33.92237 -32.98967 -31.76982 -29.43110 -28.98530 -27.30280 -25.96872 -24.74572 -22.98512 -21.82191 -21.42403 -20.93784 -20.08590 -18.07500 -17.39728 -17.10004 -16.61081 -16.34138 -15.96574 -15.77007 -15.38394 -15.09352 -14.86477 -14.59706 -14.23228 -13.88008 -13.54053 -13.18769 -12.94840 -12.83096 -12.56346 -12.51080 -12.18551 -11.82595 -11.73429 -11.64942 -11.45238 -11.29780 -11.09504 -10.94253 -10.63722 -10.41631 -10.33246 -10.07064 -9.86873 -9.56745 -9.35267 -8.93602 -8.82324 -8.72285 -7.52925 -6.96568 -6.73899 -4.40585 2.48371 2.85344 2.95550 3.08110 3.09011 3.13387 3.21634 3.36616 3.64242 3.71475 3.93461 4.25327 4.45077 4.53625 4.59163 4.62521 4.67220 4.80426 4.90227 5.12041 5.17610 5.27808 5.44259 5.49722 5.57328 5.66389 6.17319 6.35904 6.52875 6.57796 6.62784 6.69479 6.82781 6.88583 7.02686 7.13685 7.28209 7.35153 7.71315 7.73652 7.93291 8.11474 8.44732 8.45899 8.77232 8.82558 9.06866 10.20966 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002202 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.118725 B =12711.129869 C =13527.608822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.200 4.200 11 C -0.073 4.073 12 C 0.037 3.963 13 N -0.665 5.665 14 C 0.698 3.302 15 O -0.583 6.583 16 N -0.741 5.741 17 C 0.151 3.849 18 C 0.040 3.960 19 H 0.099 0.901 20 C 0.030 3.970 21 O -0.378 6.378 22 C 0.019 3.981 23 C 0.022 3.978 24 N -0.676 5.676 25 C -0.022 4.022 26 Cl -0.120 7.120 27 C -0.133 4.133 28 H 0.280 0.720 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.395 0.605 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.345 0.655 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -19.013 2.550 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.108 3.892 10 C -0.220 4.220 11 C -0.094 4.094 12 C -0.058 4.058 13 N -0.312 5.312 14 C 0.398 3.602 15 O -0.460 6.460 16 N -0.398 5.398 17 C 0.025 3.975 18 C -0.071 4.071 19 H 0.117 0.883 20 C -0.049 4.049 21 O -0.296 6.296 22 C -0.060 4.060 23 C -0.108 4.108 24 N -0.307 5.307 25 C -0.051 4.051 26 Cl -0.092 7.092 27 C -0.153 4.153 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.229 0.771 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.163 0.837 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.130 -18.607 2.146 19.708 hybrid contribution -0.278 0.216 0.657 0.745 sum -6.409 -18.391 2.803 19.676 Atomic orbital electron populations 1.69781 1.07307 1.29133 1.36765 1.25903 0.94938 1.01271 0.92428 0.86163 0.80702 0.80772 0.78494 1.18468 1.19984 1.19822 1.19514 0.95153 0.89893 1.44320 0.90059 1.17557 0.90899 0.92523 0.88246 1.20876 1.02809 0.93550 1.04803 1.20260 0.94305 0.97564 0.97227 1.16643 0.99281 0.83184 1.06662 1.42039 1.09432 1.03516 1.76203 1.15932 0.85584 0.80307 0.78353 1.90913 1.11500 1.86248 1.57382 1.44845 1.09900 1.03816 1.81249 1.20984 0.92905 0.80977 1.02585 1.22512 0.94221 0.93967 0.96403 0.88312 1.23195 0.91367 0.87083 1.03248 1.88091 1.46639 1.45368 1.49548 1.23328 0.93006 0.99972 0.89681 1.22677 0.95626 0.88385 1.04099 1.60841 1.20428 1.42909 1.06504 1.20389 0.90528 0.95816 0.98341 1.98249 1.41060 1.98653 1.71239 1.20923 0.98000 0.94809 1.01580 0.90862 0.87908 0.86909 0.77074 0.76423 0.90845 0.91781 0.87718 0.92564 0.88277 0.93062 0.89742 0.89337 0.83659 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 10.94 55.54 0.61 -19.78 16 2 C 0.07 1.75 5.31 -17.34 -0.09 1.65 16 3 Si 0.91 18.49 29.56 -169.99 -5.03 13.47 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -11.84 9.03 -37.86 -0.34 -12.18 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 C 0.11 2.89 5.51 -106.81 -0.59 2.30 16 10 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 11 C -0.07 -1.71 8.57 -39.80 -0.34 -2.05 16 12 C 0.04 0.81 6.28 -83.52 -0.52 0.29 16 13 N -0.67 -12.08 5.04 -14.07 -0.07 -12.15 16 14 C 0.70 12.25 8.27 -86.92 -0.72 11.54 16 15 O -0.58 -12.50 14.06 5.29 0.07 -12.42 16 16 N -0.74 -9.21 5.39 -65.23 -0.35 -9.57 16 17 C 0.15 1.54 5.30 -4.05 -0.02 1.52 16 18 C 0.04 0.30 2.79 -67.60 -0.19 0.12 16 19 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 20 C 0.03 0.22 6.29 37.21 0.23 0.45 16 21 O -0.38 -3.31 10.83 -35.23 -0.38 -3.69 16 22 C 0.02 0.12 7.01 37.21 0.26 0.38 16 23 C 0.02 0.13 6.76 -3.71 -0.03 0.11 16 24 N -0.68 -4.90 6.04 -106.45 -0.64 -5.54 16 25 C -0.02 -0.51 6.30 -39.71 -0.25 -0.76 16 26 Cl -0.12 -2.33 27.90 -51.86 -1.45 -3.78 16 27 C -0.13 -3.36 8.33 -39.23 -0.33 -3.69 16 28 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.11 2.58 6.44 -52.49 -0.34 2.24 16 31 H 0.39 6.19 8.04 -40.82 -0.33 5.86 16 32 H 0.40 4.27 8.17 -40.82 -0.33 3.94 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.34 2.45 8.79 -39.29 -0.35 2.11 16 42 H 0.13 3.50 6.44 -52.48 -0.34 3.16 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -29.70 361.91 -10.55 -40.25 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.46 Total: 13.35 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.31 Total: -5.60 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.46 Total: -47.03 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.31 Total: -16.11 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.45 Total: -3.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.70 -10.55 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528692014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.687 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds