Wall clock time and date at job start Tue Mar 31 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86805 * 119.99703 * 2 1 4 4 H 1.48509 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47266 * 300.00220 * 3 2 1 6 6 H 1.48505 * 109.47143 * 60.00517 * 3 2 1 7 7 C 1.39892 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99725 * 174.26660 * 7 2 1 9 9 C 1.41148 * 119.99652 * 354.26775 * 7 2 1 10 10 C 1.40888 * 120.15585 * 145.97211 * 9 7 2 11 11 C 1.36380 * 119.84884 * 180.02562 * 10 9 7 12 12 C 1.39460 * 120.18177 * 0.02562 * 11 10 9 13 13 N 1.39268 * 119.84287 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00034 * 33.77042 * 13 12 11 15 15 O 1.21586 * 120.00354 * 5.96735 * 14 13 12 16 16 N 1.34779 * 120.00378 * 185.96596 * 14 13 12 17 17 C 1.46493 * 120.00424 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47458 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.50661 * 64.99990 * 18 17 16 20 20 C 1.53094 * 109.51091 * 185.09236 * 18 17 16 21 21 O 1.43012 * 109.26254 * 176.78478 * 20 18 17 22 22 C 1.43022 * 113.73463 * 301.32600 * 21 20 18 23 23 C 1.53102 * 109.25760 * 58.67149 * 22 21 20 24 24 N 1.47013 * 109.29276 * 303.17076 * 23 22 21 25 25 C 1.39589 * 120.31998 * 359.74447 * 12 11 10 26 26 Cl 1.73601 * 119.92809 * 180.25818 * 25 12 11 27 27 C 1.36474 * 120.14394 * 0.50829 * 25 12 11 28 28 H 0.96995 * 119.99614 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.07760 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.90984 * 180.02562 * 11 10 9 31 31 H 0.97005 * 120.00023 * 213.77153 * 13 12 11 32 32 H 0.97003 * 119.99613 * 0.02562 * 16 14 13 33 33 H 1.08996 * 109.47760 * 300.00313 * 17 16 14 34 34 H 1.08998 * 109.46742 * 60.00455 * 17 16 14 35 35 H 1.09003 * 109.50488 * 296.71612 * 20 18 17 36 36 H 1.08998 * 109.50861 * 56.80332 * 20 18 17 37 37 H 1.09007 * 109.50648 * 178.60186 * 22 21 20 38 38 H 1.08996 * 109.50648 * 298.73339 * 22 21 20 39 39 H 1.09004 * 109.50832 * 63.08578 * 23 22 21 40 40 H 1.09000 * 109.50580 * 183.17072 * 23 22 21 41 41 H 1.00900 * 110.96342 * 294.79933 * 24 23 22 42 42 H 1.08006 * 120.08978 * 179.76817 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7029 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8841 2.3965 1.2126 7 6 2.0084 -1.2115 -0.0005 8 1 3.0843 -1.2136 -0.0940 9 6 1.3079 -2.4308 0.1210 10 6 1.7699 -3.5820 -0.5470 11 6 1.0879 -4.7569 -0.4256 12 6 -0.0646 -4.8209 0.3570 13 7 -0.7552 -6.0244 0.4764 14 6 -0.0812 -7.1914 0.4715 15 8 1.1346 -7.1913 0.4722 16 7 -0.7549 -8.3587 0.4658 17 6 -0.0223 -9.6273 0.4598 18 6 -1.0163 -10.7904 0.4534 19 1 -1.5823 -10.7803 -0.4780 20 6 -0.2560 -12.1135 0.5753 21 8 -1.1931 -13.1916 0.6443 22 6 -2.1060 -13.0915 1.7407 23 6 -2.8852 -11.7782 1.6306 24 7 -1.9389 -10.6539 1.5900 25 6 -0.5262 -3.6859 1.0258 26 17 -1.9583 -3.7788 2.0027 27 6 0.1431 -2.5023 0.9095 28 1 -0.4849 0.8400 0.0004 29 1 2.6620 -3.5344 -1.1538 30 1 1.4414 -5.6400 -0.9369 31 1 -1.7214 -6.0226 0.5632 32 1 -1.7249 -8.3588 0.4649 33 1 0.6046 -9.6808 -0.4302 34 1 0.6041 -9.6892 1.3497 35 1 0.3869 -12.2454 -0.2951 36 1 0.3531 -12.1015 1.4792 37 1 -2.8013 -13.9306 1.7132 38 1 -1.5514 -13.1082 2.6788 39 1 -3.4818 -11.7842 0.7183 40 1 -3.5418 -11.6711 2.4941 41 1 -1.4327 -10.5765 2.4594 42 1 -0.2169 -1.6238 1.4244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528692014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:28 Heat of formation + Delta-G solvation = -77.970620 kcal Electronic energy + Delta-G solvation = -26279.572620 eV Core-core repulsion = 22284.157844 eV Total energy + Delta-G solvation = -3995.414775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48550 -40.62242 -39.37992 -37.20613 -36.82336 -36.00959 -34.94218 -34.58243 -32.59556 -31.28929 -30.71321 -28.11342 -27.02433 -26.10597 -23.87387 -23.35509 -22.65618 -22.07730 -21.57483 -19.56225 -19.13533 -18.45537 -17.31883 -17.21866 -17.06996 -16.83248 -16.44119 -16.11564 -15.91988 -15.86091 -15.80767 -15.27908 -14.79138 -14.69347 -14.36696 -14.18818 -13.89755 -13.58441 -13.39898 -13.20639 -13.02004 -12.82013 -12.65461 -12.33976 -12.24175 -12.11636 -12.08884 -12.02193 -11.85192 -11.55462 -11.27752 -11.18600 -11.09216 -10.63570 -10.03933 -9.38607 -9.29972 -8.76474 -8.56525 -6.33109 0.68196 0.96973 1.40454 1.42986 1.47634 1.57267 1.76222 2.20927 2.25652 2.76057 2.81167 3.03741 3.35758 3.58760 3.75082 3.81141 3.96088 4.14226 4.20195 4.32720 4.38193 4.47011 4.64500 4.69068 4.74135 4.79226 4.91487 4.92506 5.01450 5.03819 5.23774 5.30045 5.46354 5.50469 5.65111 5.82953 5.89891 6.01648 6.07394 6.16961 6.25586 6.26909 6.54506 6.88460 6.92589 7.12914 7.64976 8.40109 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002202 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.118725 B =12711.129869 C =13527.608822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.082 3.918 10 C -0.210 4.210 11 C -0.080 4.080 12 C 0.050 3.950 13 N -0.661 5.661 14 C 0.697 3.303 15 O -0.622 6.622 16 N -0.718 5.718 17 C 0.151 3.849 18 C 0.055 3.945 19 H 0.098 0.902 20 C 0.031 3.969 21 O -0.398 6.398 22 C 0.016 3.984 23 C 0.026 3.974 24 N -0.683 5.683 25 C -0.030 4.030 26 Cl -0.088 7.088 27 C -0.148 4.148 28 H 0.287 0.713 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.409 0.591 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.347 0.653 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -20.054 2.981 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.522 4.522 8 H 0.098 0.902 9 C 0.079 3.921 10 C -0.230 4.230 11 C -0.100 4.100 12 C -0.046 4.046 13 N -0.309 5.309 14 C 0.397 3.603 15 O -0.502 6.502 16 N -0.374 5.374 17 C 0.026 3.974 18 C -0.056 4.056 19 H 0.116 0.884 20 C -0.048 4.048 21 O -0.317 6.317 22 C -0.062 4.062 23 C -0.104 4.104 24 N -0.314 5.314 25 C -0.058 4.058 26 Cl -0.059 7.059 27 C -0.169 4.169 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.245 0.755 32 H 0.250 0.750 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.165 0.835 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.204 -19.715 2.585 21.148 hybrid contribution -0.084 0.333 0.568 0.664 sum -7.288 -19.381 3.152 20.945 Atomic orbital electron populations 1.69838 1.08612 1.30362 1.37241 1.26713 0.95712 1.04283 0.91461 0.85093 0.79231 0.76230 0.78757 1.18251 1.19245 1.19088 1.19727 0.95281 0.90886 1.46258 0.90242 1.17859 0.91822 0.93290 0.89152 1.21029 1.03281 0.93715 1.04958 1.20362 0.94817 0.97231 0.97625 1.16682 0.98614 0.84376 1.04905 1.41905 1.09973 1.02656 1.76337 1.16079 0.85156 0.81049 0.78000 1.90894 1.13371 1.86854 1.59087 1.44704 1.10493 1.02985 1.79248 1.21115 0.93458 0.80538 1.02315 1.22305 0.93682 0.92950 0.96685 0.88396 1.23201 0.91244 0.86503 1.03833 1.88070 1.47240 1.45786 1.50604 1.23470 0.92941 1.00591 0.89237 1.22691 0.95320 0.87751 1.04591 1.60848 1.20415 1.43723 1.06368 1.20412 0.91532 0.95327 0.98576 1.98246 1.38898 1.98574 1.70209 1.20818 0.98658 0.95188 1.02233 0.90205 0.87297 0.86534 0.75452 0.74967 0.91098 0.92158 0.87154 0.92104 0.87024 0.92501 0.90151 0.87825 0.83467 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.97 10.94 21.82 0.24 -42.73 16 2 C 0.03 1.58 5.31 85.23 0.45 2.03 16 3 Si 0.99 38.07 29.56 68.60 2.03 40.10 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.49 -26.09 9.03 23.39 0.21 -25.88 16 8 H 0.08 4.08 7.85 -2.91 -0.02 4.05 16 9 C 0.08 4.38 5.51 -21.28 -0.12 4.27 16 10 C -0.21 -10.49 9.74 22.49 0.22 -10.27 16 11 C -0.08 -3.75 8.57 22.13 0.19 -3.56 16 12 C 0.05 2.19 6.28 38.58 0.24 2.43 16 13 N -0.66 -23.10 5.04 -316.70 -1.60 -24.70 16 14 C 0.70 23.58 8.27 179.06 1.48 25.06 16 15 O -0.62 -26.30 14.06 -3.99 -0.06 -26.35 16 16 N -0.72 -16.52 5.39 -478.56 -2.58 -19.10 16 17 C 0.15 2.84 5.30 86.38 0.46 3.29 16 18 C 0.05 0.73 2.79 44.92 0.13 0.86 16 19 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 20 C 0.03 0.40 6.29 72.01 0.45 0.86 16 21 O -0.40 -6.26 10.83 -148.98 -1.61 -7.87 16 22 C 0.02 0.16 7.01 72.02 0.50 0.66 16 23 C 0.03 0.25 6.76 86.32 0.58 0.83 16 24 N -0.68 -8.36 6.04 -490.69 -2.96 -11.33 16 25 C -0.03 -1.35 6.30 22.18 0.14 -1.22 16 26 Cl -0.09 -3.30 27.90 -2.72 -0.08 -3.38 16 27 C -0.15 -7.68 8.33 22.49 0.19 -7.49 16 28 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 29 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 30 H 0.12 5.35 6.44 -2.91 -0.02 5.33 16 31 H 0.41 11.97 8.04 -92.70 -0.75 11.22 16 32 H 0.41 7.76 8.17 -92.71 -0.76 7.00 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.35 4.15 8.79 -89.69 -0.79 3.36 16 42 H 0.12 6.35 6.44 -2.91 -0.02 6.34 16 Total: -1.00 -64.43 361.91 -2.68 -67.12 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -1.20 Total: 36.36 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.13 Total: -8.12 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -6.90 Total: -97.86 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.67 Total: -34.22 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.08 Total: -3.38 kcal Total: -64.43 -2.68 -67.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528692014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.854 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds