Wall clock time and date at job start Tue Mar 31 2020 22:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99717 * 2 1 4 4 H 1.48494 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47383 * 60.00021 * 3 2 1 6 6 H 1.48504 * 109.47270 * 300.00175 * 3 2 1 7 7 C 1.37872 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00102 * 186.21269 * 7 2 1 9 9 C 1.50705 * 120.00096 * 6.21006 * 7 2 1 10 10 C 1.53000 * 115.55282 * 279.45990 * 9 7 2 11 11 S 1.81401 * 109.46976 * 298.02603 * 10 9 7 12 12 O 1.42104 * 110.53984 * 297.93596 * 11 10 9 13 13 O 1.42098 * 110.54469 * 74.68639 * 11 10 9 14 14 N 1.65600 * 104.44828 * 186.31223 * 11 10 9 15 15 C 1.46503 * 120.00029 * 64.99874 * 14 11 10 16 16 H 1.08997 * 115.54691 * 359.27550 * 15 14 11 17 17 C 1.52994 * 117.49723 * 213.60954 * 15 14 11 18 18 C 1.53000 * 117.49588 * 144.98508 * 15 14 11 19 19 H 1.08994 * 117.49870 * 0.02562 * 18 15 14 20 20 C 1.50696 * 117.49742 * 214.97757 * 18 15 14 21 21 C 1.38219 * 120.01459 * 299.73032 * 20 18 15 22 22 C 1.38229 * 120.02780 * 179.72433 * 21 20 18 23 23 C 1.38266 * 120.04437 * 0.54916 * 22 21 20 24 24 C 1.38173 * 120.03120 * 359.72748 * 23 22 21 25 25 C 1.38436 * 120.01222 * 120.00387 * 20 18 15 26 26 F 1.35096 * 120.02541 * 359.97438 * 25 20 18 27 27 C 1.53007 * 117.49425 * 133.74914 * 9 7 2 28 28 C 1.53003 * 60.00106 * 252.51235 * 27 9 7 29 29 H 0.97005 * 119.99159 * 183.71001 * 1 2 3 30 30 H 1.09000 * 109.46817 * 58.02403 * 10 9 7 31 31 H 1.09000 * 109.46894 * 178.02256 * 10 9 7 32 32 H 0.97000 * 119.99723 * 244.99461 * 14 11 10 33 33 H 1.09007 * 117.50028 * 359.97438 * 17 15 14 34 34 H 1.08996 * 117.50136 * 144.99923 * 17 15 14 35 35 H 1.08002 * 119.98632 * 359.97438 * 21 20 18 36 36 H 1.07995 * 119.97678 * 180.25493 * 22 21 20 37 37 H 1.08006 * 119.98033 * 179.74584 * 23 22 21 38 38 H 1.07999 * 120.01432 * 180.02562 * 24 23 22 39 39 H 1.08995 * 117.50171 * 0.02562 * 27 9 7 40 40 H 1.09006 * 117.49119 * 145.02176 * 27 9 7 41 41 H 1.08999 * 117.49672 * 252.51318 * 28 27 9 42 42 H 1.08996 * 117.49301 * 107.48791 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 1.2125 6 1 1.8903 2.3965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1968 0.1007 9 6 1.2578 -2.4953 -0.1423 10 6 0.6072 -3.0256 1.1370 11 16 1.8909 -3.3595 2.3744 12 8 2.7837 -4.3621 1.9086 13 8 2.3778 -2.1448 2.9281 14 7 1.0812 -4.0827 3.6249 15 6 0.4523 -5.3916 3.4308 16 1 0.5515 -5.8173 2.4323 17 6 -0.8443 -5.6723 4.1928 18 6 0.4557 -6.3596 4.6156 19 1 0.9254 -6.0225 5.5396 20 6 0.5960 -7.8292 4.3131 21 6 -0.3460 -8.4664 3.5275 22 6 -0.2144 -9.8131 3.2451 23 6 0.8533 -10.5268 3.7574 24 6 1.7931 -9.8933 4.5476 25 6 1.6654 -8.5428 4.8265 26 9 2.5840 -7.9222 5.5985 27 6 1.8100 -3.5224 -1.1329 28 6 0.5302 -2.7519 -1.4636 29 1 -0.4849 -0.8384 0.0544 30 1 -0.0880 -2.2818 1.5262 31 1 0.0677 -3.9464 0.9154 32 1 1.0234 -3.6397 4.4859 33 1 -1.2292 -4.8833 4.8390 34 1 -1.5981 -6.2828 3.6958 35 1 -1.1830 -7.9109 3.1309 36 1 -0.9487 -10.3093 2.6279 37 1 0.9528 -11.5800 3.5395 38 1 2.6272 -10.4509 4.9473 39 1 2.7136 -3.2571 -1.6816 40 1 1.7100 -4.5763 -0.8731 41 1 -0.4117 -3.2989 -1.4215 42 1 0.5918 -1.9795 -2.2302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574260608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:41 Heat of formation + Delta-G solvation = -47.636349 kcal Electronic energy + Delta-G solvation = -27195.034869 eV Core-core repulsion = 23183.059231 eV Total energy + Delta-G solvation = -4011.975638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.01504 -39.79315 -37.66580 -37.09677 -36.30957 -35.19256 -32.86144 -32.03897 -30.78118 -30.22531 -28.33186 -24.99997 -24.43084 -22.83147 -22.18659 -21.42093 -20.80073 -20.03432 -18.97793 -17.97528 -17.10745 -16.90502 -16.82605 -16.14200 -16.03566 -15.67228 -15.37224 -14.71363 -14.45875 -14.39541 -14.03070 -13.75915 -13.44899 -13.29299 -13.08854 -12.77039 -12.59795 -12.45108 -12.08369 -11.88462 -11.82985 -11.56774 -11.33389 -11.28691 -11.26020 -11.20971 -10.77123 -10.72210 -10.63805 -10.37244 -10.10706 -9.71579 -9.44431 -9.09357 -8.70389 -8.62865 -8.56334 -8.29476 -6.47654 -4.27162 0.81907 0.92713 0.96507 3.19502 3.22426 3.44339 3.48969 3.63990 3.74640 4.03461 4.27438 4.39641 4.44737 4.47681 4.57170 4.68095 4.70674 4.82246 4.86072 4.96140 5.02973 5.03984 5.11120 5.22275 5.49488 5.53402 5.58620 5.73671 5.77443 5.79926 5.90279 6.00098 6.07509 6.10180 6.14345 6.20129 6.32682 6.51538 6.62113 6.72674 6.98202 7.09055 7.15498 8.01333 8.32894 8.74137 9.51749 10.91124 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.003063 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.307828 B = 9138.449217 C = 9534.043893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.040 3.960 3 Si 1.070 2.930 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.592 4.592 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.566 4.566 11 S 2.614 3.386 12 O -0.966 6.966 13 O -0.942 6.942 14 N -1.101 6.101 15 C 0.111 3.889 16 H 0.136 0.864 17 C -0.179 4.179 18 C -0.131 4.131 19 H 0.121 0.879 20 C -0.080 4.080 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.098 4.098 24 C -0.152 4.152 25 C 0.106 3.894 26 F -0.136 7.136 27 C -0.190 4.190 28 C -0.164 4.164 29 H 0.274 0.726 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.414 0.586 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 -18.946 8.523 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.167 4.167 3 Si 0.897 3.103 4 H -0.210 1.210 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.628 4.628 8 H 0.081 0.919 9 C 0.018 3.982 10 C -0.699 4.699 11 S 2.711 3.289 12 O -0.956 6.956 13 O -0.932 6.932 14 N -0.853 5.853 15 C 0.001 3.999 16 H 0.154 0.846 17 C -0.218 4.218 18 C -0.151 4.151 19 H 0.139 0.861 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.144 4.144 23 C -0.116 4.116 24 C -0.171 4.171 25 C 0.087 3.913 26 F -0.114 7.114 27 C -0.227 4.227 28 C -0.203 4.203 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.119 0.881 32 H 0.247 0.753 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.701 -17.153 8.337 19.427 hybrid contribution -0.467 -1.519 0.465 1.655 sum -4.168 -18.672 8.802 21.059 Atomic orbital electron populations 1.70733 1.06907 1.31192 1.44147 1.25823 0.96350 1.02544 0.92027 0.83545 0.75060 0.74670 0.77014 1.21045 1.20985 1.21201 1.21458 0.94638 0.89599 1.57154 0.91902 1.18565 0.99174 0.95776 0.84644 1.30134 1.16464 1.08127 1.15133 1.04992 0.75985 0.73450 0.74500 1.93519 1.60757 1.59698 1.81606 1.93570 1.77722 1.45681 1.76271 1.55741 1.73217 1.27329 1.29050 1.21402 0.97170 0.84479 0.96824 0.84619 1.23668 0.91083 1.03054 1.04022 1.21452 1.03141 0.89510 1.01038 0.86099 1.19170 0.94970 0.94314 0.99661 1.21008 0.98387 0.94814 0.97175 1.21194 0.98615 0.94197 1.00441 1.21012 0.93856 1.00216 0.96503 1.21158 1.01478 0.92915 1.01524 1.17522 0.88296 0.91031 0.94464 1.91505 1.64521 1.82894 1.72484 1.23016 0.98035 0.95623 1.06024 1.22803 0.93761 1.02315 1.01439 0.91496 0.85329 0.88146 0.75277 0.87372 0.87343 0.84691 0.85208 0.85063 0.84694 0.89242 0.90586 0.91249 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 13.55 55.43 0.75 -24.77 16 2 C 0.04 1.11 5.42 -17.82 -0.10 1.01 16 3 Si 1.07 25.45 29.91 -169.99 -5.08 20.37 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.59 -16.32 7.97 -34.44 -0.27 -16.59 16 8 H 0.06 1.80 7.82 -52.49 -0.41 1.39 16 9 C 0.02 0.50 0.88 -155.65 -0.14 0.36 16 10 C -0.57 -11.51 5.79 37.16 0.22 -11.29 16 11 S 2.61 53.10 5.11 -107.50 -0.55 52.55 16 12 O -0.97 -21.63 17.82 -57.54 -1.03 -22.65 16 13 O -0.94 -22.77 17.64 -57.54 -1.01 -23.79 16 14 N -1.10 -16.46 5.93 -4.89 -0.03 -16.49 16 15 C 0.11 1.40 5.98 -67.93 -0.41 0.99 16 16 H 0.14 1.68 8.11 -51.93 -0.42 1.26 16 17 C -0.18 -1.67 9.78 -26.73 -0.26 -1.93 16 18 C -0.13 -1.48 5.72 -91.77 -0.53 -2.00 16 19 H 0.12 1.38 7.87 -51.93 -0.41 0.97 16 20 C -0.08 -0.89 5.61 -104.56 -0.59 -1.48 16 21 C -0.10 -0.86 9.30 -39.59 -0.37 -1.23 16 22 C -0.13 -0.98 10.05 -39.57 -0.40 -1.38 16 23 C -0.10 -0.76 10.04 -39.60 -0.40 -1.16 16 24 C -0.15 -1.44 10.03 -39.51 -0.40 -1.83 16 25 C 0.11 1.25 7.25 -39.42 -0.29 0.97 16 26 F -0.14 -1.81 16.61 2.25 0.04 -1.77 16 27 C -0.19 -4.08 9.95 -26.73 -0.27 -4.35 16 28 C -0.16 -3.60 9.23 -26.73 -0.25 -3.84 16 29 H 0.27 7.56 5.97 -40.82 -0.24 7.31 16 30 H 0.13 2.69 7.25 -51.92 -0.38 2.31 16 31 H 0.10 1.65 8.11 -51.92 -0.42 1.23 16 32 H 0.41 5.36 8.92 -34.47 -0.31 5.05 16 33 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.11 0.79 6.17 -51.93 -0.32 0.47 16 35 H 0.14 0.94 6.02 -52.49 -0.32 0.62 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -34.78 372.01 -11.14 -45.93 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.40 Total: 8.77 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: -4.43 Total: -43.75 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.72 Total: -41.26 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -2.04 Total: -46.44 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Atomic # 16 Polarization: 53.10 SS G_CDS: -0.55 Total: 52.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.78 -11.14 -45.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574260608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.711 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds