Wall clock time and date at job start Tue Mar 31 2020 22:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47231 * 267.32340 * 3 2 1 5 5 H 1.48503 * 109.47034 * 27.32553 * 3 2 1 6 6 H 1.48501 * 109.47200 * 147.32125 * 3 2 1 7 7 C 1.37874 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00566 * 353.51385 * 7 2 1 9 9 C 1.50699 * 119.99842 * 173.51963 * 7 2 1 10 10 O 1.42908 * 110.91597 * 328.72497 * 9 7 2 11 11 C 1.55157 * 111.00857 * 204.82261 * 9 7 2 12 12 C 1.54320 * 102.94654 * 206.42363 * 11 9 7 13 13 N 1.47026 * 107.27057 * 22.18947 * 12 11 9 14 14 C 1.34777 * 125.64765 * 181.02292 * 13 12 11 15 15 O 1.21283 * 119.99872 * 180.30141 * 14 13 12 16 16 C 1.50698 * 120.00202 * 0.02611 * 14 13 12 17 17 C 1.52994 * 109.47158 * 180.02562 * 16 14 13 18 18 S 1.81405 * 109.47247 * 180.02562 * 17 16 14 19 19 C 1.76195 * 103.00041 * 179.97438 * 18 17 16 20 20 C 1.38936 * 120.05623 * 359.72506 * 19 18 17 21 21 C 1.38097 * 119.94411 * 179.71889 * 20 19 18 22 22 C 1.38482 * 120.05477 * 0.55835 * 21 20 19 23 23 F 1.35103 * 119.94583 * 179.70067 * 22 21 20 24 24 C 1.38478 * 120.11160 * 359.71638 * 22 21 20 25 25 C 1.38106 * 120.05071 * 0.02562 * 24 22 21 26 26 C 1.47423 * 108.70378 * 1.29120 * 13 12 11 27 27 H 0.97002 * 119.99875 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99822 * 292.30317 * 10 9 7 29 29 H 1.09004 * 110.71690 * 88.05489 * 11 9 7 30 30 H 1.08997 * 110.71667 * 324.78933 * 11 9 7 31 31 H 1.09001 * 109.88436 * 262.77502 * 12 11 9 32 32 H 1.08993 * 110.01242 * 141.67917 * 12 11 9 33 33 H 1.08998 * 109.47064 * 300.00446 * 16 14 13 34 34 H 1.09002 * 109.47188 * 59.99693 * 16 14 13 35 35 H 1.09008 * 109.47384 * 299.99942 * 17 16 14 36 36 H 1.08998 * 109.47695 * 60.00147 * 17 16 14 37 37 H 1.08001 * 120.02850 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.97688 * 180.29709 * 21 20 19 39 39 H 1.08000 * 119.97367 * 179.97438 * 24 22 21 40 40 H 1.08003 * 120.02264 * 180.02562 * 25 24 22 41 41 H 1.08998 * 110.37118 * 94.47569 * 26 13 12 42 42 H 1.09001 * 110.37097 * 216.80337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5533 2.0137 -1.3985 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4571 0.7559 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1265 0.1047 9 6 3.5042 -1.1982 -0.1478 10 8 3.9411 -0.0993 -0.9502 11 6 4.0020 -2.5463 -0.7328 12 6 5.4430 -2.6478 -0.1899 13 7 5.5219 -1.7901 1.0017 14 6 6.6218 -1.5908 1.7546 15 8 6.5699 -0.8628 2.7232 16 6 7.9146 -2.2774 1.3965 17 6 8.9968 -1.8845 2.4040 18 16 10.5533 -2.7104 1.9726 19 6 11.6608 -2.1463 3.2214 20 6 11.2153 -1.2682 4.2016 21 6 12.0838 -0.8321 5.1828 22 6 13.4008 -1.2601 5.1834 23 9 14.2501 -0.8273 6.1408 24 6 13.8488 -2.1308 4.2042 25 6 12.9827 -2.5740 3.2240 26 6 4.1969 -1.1893 1.2403 27 1 -0.4850 0.8401 0.0004 28 1 3.6762 -0.1601 -1.8782 29 1 4.0015 -2.5175 -1.8225 30 1 3.3931 -3.3734 -0.3676 31 1 6.1487 -2.3001 -0.9442 32 1 5.6679 -3.6795 0.0804 33 1 7.7711 -3.3576 1.4206 34 1 8.2220 -1.9741 0.3957 35 1 9.1405 -0.8042 2.3803 36 1 8.6893 -2.1882 3.4047 37 1 10.1893 -0.9309 4.1992 38 1 11.7367 -0.1533 5.9478 39 1 14.8765 -2.4628 4.2066 40 1 13.3325 -3.2533 2.4607 41 1 3.6310 -1.7893 1.9529 42 1 4.3037 -0.1673 1.6040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:16 Heat of formation + Delta-G solvation = -103.668003 kcal Electronic energy + Delta-G solvation = -25885.480009 eV Core-core repulsion = 21871.074656 eV Total energy + Delta-G solvation = -4014.405353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.22652 -39.81882 -39.17505 -37.79341 -34.85322 -33.20881 -32.43278 -31.57973 -30.95221 -30.35831 -28.62100 -26.02331 -24.28811 -23.23677 -23.10546 -22.40428 -19.94668 -19.03226 -18.25359 -17.66084 -17.59473 -17.12574 -16.63303 -16.11678 -15.92785 -15.53263 -15.17995 -14.95938 -14.92275 -14.51303 -14.33520 -14.03831 -13.82282 -13.68845 -13.28176 -12.97380 -12.72782 -12.58023 -12.42137 -12.18097 -12.14729 -11.86794 -11.65479 -11.56197 -11.53827 -10.96127 -10.65154 -10.57435 -10.37236 -10.27821 -9.91994 -9.68131 -9.59214 -9.29668 -8.66310 -8.59779 -8.22489 -7.71640 -6.26055 -4.39393 0.59473 0.77444 1.08259 2.02322 2.82259 3.07561 3.32825 3.42431 3.52072 3.69095 3.87306 4.27171 4.42461 4.44909 4.45276 4.64063 4.67574 4.75930 4.90114 4.98996 5.04224 5.15354 5.23090 5.27713 5.36339 5.42866 5.50099 5.58390 5.64383 5.68847 5.73154 5.75035 5.94018 6.02971 6.38121 6.42950 6.47768 6.54395 6.62851 6.90378 7.38564 7.86845 8.05587 8.37608 8.54830 8.74514 9.35468 10.82368 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024764 B = 0.002091 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.384888 B =13385.805392 C =14094.248177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.075 3.925 3 Si 0.948 3.052 4 H -0.292 1.292 5 H -0.324 1.324 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.558 6.558 11 C -0.149 4.149 12 C 0.102 3.898 13 N -0.609 5.609 14 C 0.528 3.472 15 O -0.551 6.551 16 C -0.121 4.121 17 C -0.091 4.091 18 S -0.108 6.108 19 C -0.092 4.092 20 C -0.104 4.104 21 C -0.131 4.131 22 C 0.089 3.911 23 F -0.140 7.140 24 C -0.136 4.136 25 C -0.073 4.073 26 C 0.113 3.887 27 H 0.268 0.732 28 H 0.371 0.629 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.190 -7.240 2.934 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.783 3.217 4 H -0.219 1.219 5 H -0.256 1.256 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.366 6.366 11 C -0.187 4.187 12 C -0.022 4.022 13 N -0.342 5.342 14 C 0.314 3.686 15 O -0.430 6.430 16 C -0.163 4.163 17 C -0.240 4.240 18 S 0.138 5.862 19 C -0.205 4.205 20 C -0.127 4.127 21 C -0.152 4.152 22 C 0.067 3.933 23 F -0.118 7.118 24 C -0.156 4.156 25 C -0.097 4.097 26 C -0.009 4.009 27 H 0.077 0.923 28 H 0.219 0.781 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.099 0.901 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.425 -7.336 3.094 25.690 hybrid contribution 0.019 1.525 0.667 1.664 sum 24.444 -5.811 3.761 25.405 Atomic orbital electron populations 1.69960 1.06834 1.27952 1.47146 1.25159 0.94926 1.00598 0.92387 0.85699 0.78013 0.80035 0.77965 1.21949 1.25580 1.19508 1.21134 0.88227 0.95418 1.54293 0.89957 1.20271 0.93511 0.81745 0.86622 1.86152 1.79945 1.46693 1.23841 1.23283 0.93260 1.01494 1.00690 1.22072 0.99518 0.93440 0.87131 1.48689 1.10792 1.46764 1.27946 1.19885 0.84050 0.81947 0.82722 1.90693 1.84929 1.39232 1.28156 1.21313 0.92019 1.02588 1.00343 1.23454 0.93186 1.04008 1.03320 1.85392 1.04644 1.60893 1.35297 1.21813 0.97684 1.01439 0.99578 1.21191 1.00557 0.97114 0.93878 1.21095 0.91940 1.01774 1.00383 1.17707 0.88196 0.98502 0.88870 1.91507 1.70101 1.88312 1.61920 1.21069 1.01104 0.98647 0.94799 1.20622 0.90918 0.99676 0.98497 1.23024 0.79903 0.98963 0.98981 0.92300 0.78102 0.90588 0.90065 0.91939 0.92148 0.88028 0.88004 0.88324 0.88302 0.84337 0.84252 0.84205 0.84373 0.90140 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.95 23.37 24.92 -169.99 -4.24 19.14 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.32 -8.27 7.11 56.52 0.40 -7.86 16 6 H -0.27 -6.79 5.42 56.52 0.31 -6.48 16 7 C -0.55 -14.06 8.88 -34.44 -0.31 -14.37 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.22 4.57 0.70 -89.50 -0.06 4.50 16 10 O -0.56 -11.57 8.53 -35.23 -0.30 -11.87 16 11 C -0.15 -2.41 6.11 -24.90 -0.15 -2.56 16 12 C 0.10 1.41 6.48 -3.06 -0.02 1.39 16 13 N -0.61 -10.48 3.32 -170.38 -0.57 -11.04 16 14 C 0.53 8.63 7.85 -10.99 -0.09 8.55 16 15 O -0.55 -10.98 16.24 5.55 0.09 -10.89 16 16 C -0.12 -1.36 4.90 -27.89 -0.14 -1.49 16 17 C -0.09 -0.97 3.62 37.15 0.13 -0.83 16 18 S -0.11 -1.02 21.92 -107.50 -2.36 -3.38 16 19 C -0.09 -0.88 6.11 -39.06 -0.24 -1.12 16 20 C -0.10 -0.99 9.36 -39.37 -0.37 -1.36 16 21 C -0.13 -1.19 10.02 -39.54 -0.40 -1.59 16 22 C 0.09 0.82 7.30 -39.40 -0.29 0.54 16 23 F -0.14 -1.38 17.26 2.25 0.04 -1.34 16 24 C -0.14 -1.07 10.02 -39.54 -0.40 -1.47 16 25 C -0.07 -0.60 9.79 -39.37 -0.39 -0.99 16 26 C 0.11 2.36 5.89 -2.41 -0.01 2.34 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.37 6.52 8.99 45.56 0.41 6.92 16 29 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 30 H 0.08 1.32 7.98 -51.93 -0.41 0.91 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.12 7.69 -51.92 -0.40 0.72 16 36 H 0.10 1.08 7.71 -51.93 -0.40 0.68 16 37 H 0.14 1.29 5.88 -52.49 -0.31 0.98 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.08 1.69 8.03 -51.93 -0.42 1.28 16 42 H 0.08 1.83 6.50 -51.93 -0.34 1.49 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -31.76 362.25 -8.81 -40.57 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.90 Total: 4.77 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.81 Total: -6.52 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.21 Total: -35.92 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.21 Total: -22.76 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.24 Total: 19.14 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.36 Total: -3.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.76 -8.81 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.101 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds