Wall clock time and date at job start Tue Mar 31 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47231 * 267.32340 * 3 2 1 5 5 H 1.48503 * 109.47034 * 27.32553 * 3 2 1 6 6 H 1.48501 * 109.47200 * 147.32125 * 3 2 1 7 7 C 1.37874 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00566 * 353.51385 * 7 2 1 9 9 C 1.50699 * 119.99842 * 173.51963 * 7 2 1 10 10 O 1.42908 * 110.91597 * 328.72497 * 9 7 2 11 11 C 1.55157 * 111.00857 * 204.82261 * 9 7 2 12 12 C 1.54320 * 102.94654 * 206.42363 * 11 9 7 13 13 N 1.47026 * 107.27057 * 22.18947 * 12 11 9 14 14 C 1.34777 * 125.64765 * 181.02292 * 13 12 11 15 15 O 1.21283 * 119.99872 * 180.30141 * 14 13 12 16 16 C 1.50698 * 120.00202 * 0.02611 * 14 13 12 17 17 C 1.52994 * 109.47158 * 180.02562 * 16 14 13 18 18 S 1.81405 * 109.47247 * 180.02562 * 17 16 14 19 19 C 1.76195 * 103.00041 * 179.97438 * 18 17 16 20 20 C 1.38936 * 120.05623 * 359.72506 * 19 18 17 21 21 C 1.38097 * 119.94411 * 179.71889 * 20 19 18 22 22 C 1.38482 * 120.05477 * 0.55835 * 21 20 19 23 23 F 1.35103 * 119.94583 * 179.70067 * 22 21 20 24 24 C 1.38478 * 120.11160 * 359.71638 * 22 21 20 25 25 C 1.38106 * 120.05071 * 0.02562 * 24 22 21 26 26 C 1.47423 * 108.70378 * 1.29120 * 13 12 11 27 27 H 0.97002 * 119.99875 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99822 * 292.30317 * 10 9 7 29 29 H 1.09004 * 110.71690 * 88.05489 * 11 9 7 30 30 H 1.08997 * 110.71667 * 324.78933 * 11 9 7 31 31 H 1.09001 * 109.88436 * 262.77502 * 12 11 9 32 32 H 1.08993 * 110.01242 * 141.67917 * 12 11 9 33 33 H 1.08998 * 109.47064 * 300.00446 * 16 14 13 34 34 H 1.09002 * 109.47188 * 59.99693 * 16 14 13 35 35 H 1.09008 * 109.47384 * 299.99942 * 17 16 14 36 36 H 1.08998 * 109.47695 * 60.00147 * 17 16 14 37 37 H 1.08001 * 120.02850 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.97688 * 180.29709 * 21 20 19 39 39 H 1.08000 * 119.97367 * 179.97438 * 24 22 21 40 40 H 1.08003 * 120.02264 * 180.02562 * 25 24 22 41 41 H 1.08998 * 110.37118 * 94.47569 * 26 13 12 42 42 H 1.09001 * 110.37097 * 216.80337 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5533 2.0137 -1.3985 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4571 0.7559 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1265 0.1047 9 6 3.5042 -1.1982 -0.1478 10 8 3.9411 -0.0993 -0.9502 11 6 4.0020 -2.5463 -0.7328 12 6 5.4430 -2.6478 -0.1899 13 7 5.5219 -1.7901 1.0017 14 6 6.6218 -1.5908 1.7546 15 8 6.5699 -0.8628 2.7232 16 6 7.9146 -2.2774 1.3965 17 6 8.9968 -1.8845 2.4040 18 16 10.5533 -2.7104 1.9726 19 6 11.6608 -2.1463 3.2214 20 6 11.2153 -1.2682 4.2016 21 6 12.0838 -0.8321 5.1828 22 6 13.4008 -1.2601 5.1834 23 9 14.2501 -0.8273 6.1408 24 6 13.8488 -2.1308 4.2042 25 6 12.9827 -2.5740 3.2240 26 6 4.1969 -1.1893 1.2403 27 1 -0.4850 0.8401 0.0004 28 1 3.6762 -0.1601 -1.8782 29 1 4.0015 -2.5175 -1.8225 30 1 3.3931 -3.3734 -0.3676 31 1 6.1487 -2.3001 -0.9442 32 1 5.6679 -3.6795 0.0804 33 1 7.7711 -3.3576 1.4206 34 1 8.2220 -1.9741 0.3957 35 1 9.1405 -0.8042 2.3803 36 1 8.6893 -2.1882 3.4047 37 1 10.1893 -0.9309 4.1992 38 1 11.7367 -0.1533 5.9478 39 1 14.8765 -2.4628 4.2066 40 1 13.3325 -3.2533 2.4607 41 1 3.6310 -1.7893 1.9529 42 1 4.3037 -0.1673 1.6040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:15 Heat of formation + Delta-G solvation = -124.372302 kcal Electronic energy + Delta-G solvation = -25886.377815 eV Core-core repulsion = 21871.074656 eV Total energy + Delta-G solvation = -4015.303159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94633 -41.17547 -39.82957 -39.27821 -36.37446 -34.48536 -34.17341 -32.28153 -31.80918 -31.57683 -30.11438 -27.55963 -25.57288 -24.15324 -23.85927 -23.43144 -21.57825 -20.27044 -19.46458 -18.93947 -18.54853 -18.16911 -17.35800 -17.30139 -17.09009 -16.65317 -16.60771 -16.38427 -15.99802 -15.60728 -15.46283 -15.05611 -14.74549 -14.65530 -14.39576 -14.31712 -14.00078 -13.85320 -13.69495 -13.56438 -13.33289 -13.18494 -12.93660 -12.58977 -12.51331 -12.35945 -12.18091 -12.13688 -11.94629 -11.33013 -11.28103 -11.00332 -10.67804 -10.62028 -10.33107 -10.23640 -9.60425 -8.41349 -8.38386 -6.50174 -0.09481 0.12855 0.32446 1.25932 1.41631 1.48712 1.58191 1.69016 2.08286 2.39543 2.41054 2.94723 3.20519 3.39202 3.54436 3.64490 3.72203 3.80663 3.80982 3.85748 4.13507 4.25713 4.28293 4.30459 4.41837 4.52155 4.60431 4.61975 4.71795 4.77742 4.82480 4.87742 4.96947 5.04273 5.06975 5.10026 5.18200 5.26196 5.33226 5.54188 5.73344 6.05325 6.56678 6.60815 6.98922 7.10156 7.30066 8.74151 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024764 B = 0.002091 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.384888 B =13385.805392 C =14094.248177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 1.002 2.998 4 H -0.274 1.274 5 H -0.340 1.340 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.213 3.787 10 O -0.564 6.564 11 C -0.140 4.140 12 C 0.103 3.897 13 N -0.613 5.613 14 C 0.521 3.479 15 O -0.597 6.597 16 C -0.106 4.106 17 C -0.093 4.093 18 S -0.082 6.082 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.139 4.139 22 C 0.075 3.925 23 F -0.146 7.146 24 C -0.130 4.130 25 C -0.072 4.072 26 C 0.116 3.884 27 H 0.267 0.733 28 H 0.386 0.614 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.068 0.932 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.441 -8.973 1.214 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.837 3.163 4 H -0.200 1.200 5 H -0.273 1.273 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.172 3.828 10 O -0.374 6.374 11 C -0.178 4.178 12 C -0.018 4.018 13 N -0.346 5.346 14 C 0.310 3.690 15 O -0.479 6.479 16 C -0.147 4.147 17 C -0.242 4.242 18 S 0.164 5.836 19 C -0.221 4.221 20 C -0.139 4.139 21 C -0.160 4.160 22 C 0.053 3.947 23 F -0.125 7.125 24 C -0.150 4.150 25 C -0.096 4.096 26 C -0.007 4.007 27 H 0.075 0.925 28 H 0.236 0.764 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.178 0.822 41 H 0.086 0.914 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 27.705 -9.098 1.330 29.191 hybrid contribution -0.950 2.001 1.258 2.547 sum 26.756 -7.098 2.587 27.802 Atomic orbital electron populations 1.70063 1.08185 1.28372 1.50260 1.25787 0.95262 1.03239 0.92930 0.84810 0.75982 0.77119 0.78360 1.20040 1.27313 1.20813 1.21457 0.90996 0.93785 1.51802 0.92716 1.20145 0.90686 0.84634 0.87333 1.86086 1.79472 1.46827 1.25004 1.23178 0.94651 0.97780 1.02191 1.22307 0.98268 0.94965 0.86309 1.48742 1.09496 1.47060 1.29267 1.20845 0.85196 0.81301 0.81702 1.90675 1.85736 1.41263 1.30179 1.21290 0.88738 1.03446 1.01237 1.23358 0.94269 1.03583 1.02991 1.85175 1.03276 1.60291 1.34908 1.22019 0.98509 1.01806 0.99784 1.21215 1.00537 0.97747 0.94437 1.21234 0.92137 1.02006 1.00595 1.17920 0.88219 0.99218 0.89333 1.91491 1.70224 1.88497 1.62272 1.21353 1.02250 0.97587 0.93854 1.20897 0.90256 0.99576 0.98869 1.22580 0.82498 0.97070 0.98583 0.92454 0.76409 0.88040 0.90411 0.89014 0.88446 0.85227 0.85717 0.89548 0.89174 0.84800 0.83510 0.81787 0.82204 0.91418 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 2 C 0.03 1.57 5.46 84.65 0.46 2.03 16 3 Si 1.00 49.22 24.92 68.60 1.71 50.93 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.34 -17.44 7.11 99.48 0.71 -16.73 16 6 H -0.28 -14.28 5.42 99.48 0.54 -13.74 16 7 C -0.54 -27.91 8.88 25.60 0.23 -27.69 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.21 8.65 0.70 -10.07 -0.01 8.64 16 10 O -0.56 -22.32 8.53 -148.98 -1.27 -23.59 16 11 C -0.14 -4.08 6.11 31.78 0.19 -3.89 16 12 C 0.10 2.39 6.48 86.73 0.56 2.95 16 13 N -0.61 -19.83 3.32 -811.35 -2.70 -22.53 16 14 C 0.52 16.19 7.85 87.66 0.69 16.88 16 15 O -0.60 -24.00 16.24 -3.04 -0.05 -24.05 16 16 C -0.11 -2.02 4.90 29.85 0.15 -1.87 16 17 C -0.09 -1.82 3.62 71.98 0.26 -1.56 16 18 S -0.08 -1.32 21.92 -56.49 -1.24 -2.56 16 19 C -0.11 -1.86 6.11 22.61 0.14 -1.73 16 20 C -0.12 -2.14 9.36 22.40 0.21 -1.93 16 21 C -0.14 -2.46 10.02 22.29 0.22 -2.24 16 22 C 0.07 1.30 7.30 22.39 0.16 1.46 16 23 F -0.15 -2.76 17.26 44.97 0.78 -1.98 16 24 C -0.13 -1.76 10.02 22.30 0.22 -1.54 16 25 C -0.07 -1.00 9.79 22.41 0.22 -0.78 16 26 C 0.12 4.87 5.89 86.94 0.51 5.38 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.39 12.51 8.99 -74.06 -0.67 11.84 16 29 H 0.10 2.46 8.12 -2.38 -0.02 2.45 16 30 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 1.89 7.69 -2.39 -0.02 1.88 16 36 H 0.09 1.91 7.71 -2.39 -0.02 1.89 16 37 H 0.13 2.53 5.88 -2.91 -0.02 2.51 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.07 2.93 8.03 -2.39 -0.02 2.92 16 42 H 0.04 1.98 6.50 -2.39 -0.02 1.97 16 Total: -1.00 -72.11 362.25 1.97 -70.14 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.22 Total: 14.83 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.22 Total: -5.87 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.40 Total: -77.86 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -1.32 Total: -47.63 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 1.71 Total: 50.93 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -1.24 Total: -2.56 kcal Total: -72.11 1.97 -70.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.231 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds