Wall clock time and date at job start Tue Mar 31 2020 22:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99676 * 2 1 4 4 H 1.48510 * 109.47035 * 239.99894 * 3 2 1 5 5 H 1.48507 * 109.47227 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47398 * 119.99773 * 3 2 1 7 7 C 1.37871 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99991 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64035 * 298.31660 * 9 7 2 11 11 C 1.55161 * 110.71763 * 61.45459 * 9 7 2 12 12 C 1.54903 * 101.57878 * 153.86593 * 11 9 7 13 13 N 1.47425 * 104.83483 * 322.99156 * 12 11 9 14 14 C 1.34779 * 125.64926 * 204.09411 * 13 12 11 15 15 O 1.21273 * 120.00093 * 180.02562 * 14 13 12 16 16 C 1.50706 * 119.99767 * 0.02562 * 14 13 12 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 13 18 18 S 1.81404 * 109.46946 * 180.02562 * 17 16 14 19 19 C 1.76192 * 102.99967 * 180.02562 * 18 17 16 20 20 C 1.38941 * 120.05579 * 359.72338 * 19 18 17 21 21 C 1.38108 * 119.94323 * 179.79650 * 20 19 18 22 22 C 1.38472 * 120.05419 * 0.47923 * 21 20 19 23 23 F 1.35101 * 119.94420 * 179.77042 * 22 21 20 24 24 C 1.38480 * 120.11450 * 359.74682 * 22 21 20 25 25 C 1.38102 * 120.05043 * 0.02603 * 24 22 21 26 26 C 1.47023 * 108.70248 * 24.35766 * 13 12 11 27 27 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00095 * 61.68651 * 10 9 7 29 29 H 1.09007 * 111.00214 * 35.79096 * 11 9 7 30 30 H 1.08996 * 111.03469 * 271.95908 * 11 9 7 31 31 H 1.09004 * 110.36403 * 204.14962 * 12 11 9 32 32 H 1.09000 * 110.36803 * 81.83140 * 12 11 9 33 33 H 1.09001 * 109.46797 * 60.00350 * 16 14 13 34 34 H 1.08992 * 109.47518 * 300.00347 * 16 14 13 35 35 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 36 36 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 37 37 H 1.07998 * 120.03064 * 0.02562 * 20 19 18 38 38 H 1.07995 * 119.96890 * 180.21221 * 21 20 19 39 39 H 1.08002 * 119.97703 * 179.97438 * 24 22 21 40 40 H 1.08002 * 120.02643 * 179.97438 * 25 24 22 41 41 H 1.08996 * 109.88020 * 118.13190 * 26 13 12 42 42 H 1.09002 * 109.87767 * 239.29718 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4505 -2.6186 1.1770 11 6 0.3757 -2.6276 -1.2751 12 6 0.2713 -4.1656 -1.4269 13 7 1.5927 -4.6758 -1.0182 14 6 2.1326 -5.8510 -1.3976 15 8 3.2320 -6.1704 -0.9976 16 6 1.3702 -6.7680 -2.3190 17 6 2.2006 -8.0241 -2.5900 18 16 1.2832 -9.1277 -3.6996 19 6 2.3776 -10.4949 -3.8927 20 6 3.6089 -10.4969 -3.2491 21 6 4.4633 -11.5717 -3.3987 22 6 4.0977 -12.6422 -4.1973 23 9 4.9371 -13.6903 -4.3458 24 6 2.8730 -12.6405 -4.8437 25 6 2.0133 -11.5702 -4.6935 26 6 2.2212 -3.6933 -0.1231 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2276 -1.9345 1.2626 29 1 0.8730 -2.1827 -2.1371 30 1 -0.6072 -2.1824 -1.1210 31 1 0.0661 -4.4313 -2.4639 32 1 -0.5064 -4.5594 -0.7725 33 1 1.1704 -6.2542 -3.2593 34 1 0.4268 -7.0503 -1.8517 35 1 3.1442 -7.7422 -3.0571 36 1 2.3999 -8.5378 -1.6495 37 1 3.8962 -9.6604 -2.6293 38 1 5.4190 -11.5752 -2.8958 39 1 2.5904 -13.4764 -5.4664 40 1 1.0584 -11.5692 -5.1982 41 1 2.3891 -4.1392 0.8572 42 1 3.1676 -3.3578 -0.5472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:18 Heat of formation + Delta-G solvation = -109.690850 kcal Electronic energy + Delta-G solvation = -25682.606452 eV Core-core repulsion = 21667.939929 eV Total energy + Delta-G solvation = -4014.666523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.20472 -39.66734 -39.14577 -37.46416 -34.41331 -33.14354 -32.27512 -31.54391 -30.91715 -29.79197 -28.45793 -25.90454 -24.34652 -23.19649 -23.03511 -22.15944 -19.82003 -18.87772 -18.21471 -17.63991 -17.34360 -16.89636 -16.59336 -16.01958 -15.89802 -15.39475 -15.03662 -14.98225 -14.72092 -14.33513 -14.17896 -14.01126 -13.66629 -13.52030 -13.10673 -13.01669 -12.58077 -12.37960 -12.16946 -12.03422 -11.73849 -11.51133 -11.48512 -11.43379 -11.41067 -10.93072 -10.70235 -10.55618 -10.52196 -10.18130 -9.88881 -9.61386 -9.56483 -9.40184 -8.72567 -8.30374 -8.13773 -7.67727 -6.34259 -4.42007 0.62341 0.80157 1.12532 2.06872 2.89076 3.10330 3.18365 3.23324 3.26370 3.44339 3.89883 4.22317 4.29922 4.45061 4.51402 4.69923 4.78255 4.80564 4.92974 4.94774 5.27746 5.30851 5.43628 5.45863 5.49994 5.63562 5.68239 5.71547 5.75781 5.78098 5.83193 5.93394 6.13002 6.36677 6.40806 6.59057 6.81601 6.87087 7.22119 7.27958 7.67386 7.95172 7.97617 8.45024 8.60389 9.23904 9.33054 10.73246 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.001861 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.232407 B =15045.623744 C =15454.322282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.092 3.908 13 N -0.605 5.605 14 C 0.527 3.473 15 O -0.556 6.556 16 C -0.121 4.121 17 C -0.090 4.090 18 S -0.107 6.107 19 C -0.092 4.092 20 C -0.104 4.104 21 C -0.131 4.131 22 C 0.088 3.912 23 F -0.140 7.140 24 C -0.136 4.136 25 C -0.073 4.073 26 C 0.123 3.877 27 H 0.269 0.731 28 H 0.383 0.617 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.062 0.938 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -19.259 -9.729 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.030 4.030 13 N -0.338 5.338 14 C 0.313 3.687 15 O -0.436 6.436 16 C -0.163 4.163 17 C -0.239 4.239 18 S 0.139 5.861 19 C -0.205 4.205 20 C -0.128 4.128 21 C -0.152 4.152 22 C 0.066 3.934 23 F -0.119 7.119 24 C -0.156 4.156 25 C -0.097 4.097 26 C 0.001 3.999 27 H 0.079 0.921 28 H 0.233 0.767 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.219 -19.623 -9.881 21.971 hybrid contribution 1.403 1.033 0.351 1.777 sum 1.184 -18.589 -9.530 20.924 Atomic orbital electron populations 1.69678 1.05935 1.27817 1.50067 1.24981 0.95049 0.99534 0.93420 0.86469 0.79553 0.82015 0.78914 1.20059 1.21087 1.19974 1.21461 0.93652 0.90174 1.52128 0.91820 1.19469 0.86963 0.90643 0.82261 1.86133 1.51855 1.56504 1.44969 1.23307 1.02975 0.90052 1.00993 1.22571 0.84174 0.97809 0.98486 1.48641 1.19537 1.18089 1.47484 1.19855 0.86150 0.80973 0.81678 1.90671 1.20865 1.74322 1.57724 1.21306 0.99736 0.93965 1.01265 1.23452 1.01529 0.97106 1.01810 1.85435 1.25691 1.14561 1.60423 1.21831 0.97952 0.99034 1.01675 1.21194 0.92733 0.99018 0.99829 1.21088 1.01292 0.93100 0.99719 1.17701 0.89483 0.85848 1.00321 1.91505 1.70419 1.55514 1.94439 1.21067 0.93053 1.00081 1.01409 1.20625 0.99833 0.91569 0.97704 1.22096 0.96798 0.88466 0.92548 0.92110 0.76717 0.91379 0.89244 0.91973 0.91709 0.87952 0.87985 0.88326 0.88339 0.84327 0.84282 0.84227 0.84371 0.92010 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.26 10.67 55.43 0.59 -21.67 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.60 8.22 -34.44 -0.28 -13.88 16 8 H 0.06 1.63 7.58 -52.49 -0.40 1.23 16 9 C 0.25 5.71 0.85 -89.93 -0.08 5.63 16 10 O -0.59 -14.15 13.07 -35.23 -0.46 -14.61 16 11 C -0.13 -2.74 5.47 -24.58 -0.13 -2.87 16 12 C 0.09 1.53 6.68 -2.53 -0.02 1.51 16 13 N -0.61 -11.12 3.33 -170.52 -0.57 -11.69 16 14 C 0.53 8.88 7.85 -10.98 -0.09 8.80 16 15 O -0.56 -11.03 16.31 5.56 0.09 -10.93 16 16 C -0.12 -1.44 4.71 -27.88 -0.13 -1.57 16 17 C -0.09 -0.99 3.62 37.16 0.13 -0.86 16 18 S -0.11 -1.05 21.92 -107.50 -2.36 -3.41 16 19 C -0.09 -0.90 6.11 -39.06 -0.24 -1.13 16 20 C -0.10 -1.00 9.36 -39.37 -0.37 -1.37 16 21 C -0.13 -1.20 10.02 -39.54 -0.40 -1.59 16 22 C 0.09 0.82 7.30 -39.41 -0.29 0.54 16 23 F -0.14 -1.39 17.26 2.25 0.04 -1.35 16 24 C -0.14 -1.09 10.02 -39.54 -0.40 -1.49 16 25 C -0.07 -0.62 9.79 -39.37 -0.39 -1.00 16 26 C 0.12 2.65 6.23 -3.06 -0.02 2.63 16 27 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 28 H 0.38 9.23 7.46 45.56 0.34 9.57 16 29 H 0.07 1.43 8.04 -51.92 -0.42 1.02 16 30 H 0.09 1.90 7.54 -51.93 -0.39 1.50 16 31 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.08 7.85 -51.93 -0.41 0.67 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.12 7.69 -51.92 -0.40 0.72 16 36 H 0.10 1.11 7.72 -51.92 -0.40 0.71 16 37 H 0.14 1.29 5.88 -52.49 -0.31 0.98 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.07 1.61 7.66 -51.93 -0.40 1.21 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -27.69 366.64 -9.77 -37.47 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.84 Total: 10.83 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.78 Total: -4.94 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.02 Total: -33.36 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.37 Total: -25.54 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.36 Total: -3.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.69 -9.77 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.222 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds