Wall clock time and date at job start Tue Mar 31 2020 22:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99676 * 2 1 4 4 H 1.48510 * 109.47035 * 239.99894 * 3 2 1 5 5 H 1.48507 * 109.47227 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47398 * 119.99773 * 3 2 1 7 7 C 1.37871 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99991 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64035 * 298.31660 * 9 7 2 11 11 C 1.55161 * 110.71763 * 61.45459 * 9 7 2 12 12 C 1.54903 * 101.57878 * 153.86593 * 11 9 7 13 13 N 1.47425 * 104.83483 * 322.99156 * 12 11 9 14 14 C 1.34779 * 125.64926 * 204.09411 * 13 12 11 15 15 O 1.21273 * 120.00093 * 180.02562 * 14 13 12 16 16 C 1.50706 * 119.99767 * 0.02562 * 14 13 12 17 17 C 1.53000 * 109.46735 * 180.02562 * 16 14 13 18 18 S 1.81404 * 109.46946 * 180.02562 * 17 16 14 19 19 C 1.76192 * 102.99967 * 180.02562 * 18 17 16 20 20 C 1.38941 * 120.05579 * 359.72338 * 19 18 17 21 21 C 1.38108 * 119.94323 * 179.79650 * 20 19 18 22 22 C 1.38472 * 120.05419 * 0.47923 * 21 20 19 23 23 F 1.35101 * 119.94420 * 179.77042 * 22 21 20 24 24 C 1.38480 * 120.11450 * 359.74682 * 22 21 20 25 25 C 1.38102 * 120.05043 * 0.02603 * 24 22 21 26 26 C 1.47023 * 108.70248 * 24.35766 * 13 12 11 27 27 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00095 * 61.68651 * 10 9 7 29 29 H 1.09007 * 111.00214 * 35.79096 * 11 9 7 30 30 H 1.08996 * 111.03469 * 271.95908 * 11 9 7 31 31 H 1.09004 * 110.36403 * 204.14962 * 12 11 9 32 32 H 1.09000 * 110.36803 * 81.83140 * 12 11 9 33 33 H 1.09001 * 109.46797 * 60.00350 * 16 14 13 34 34 H 1.08992 * 109.47518 * 300.00347 * 16 14 13 35 35 H 1.09002 * 109.47398 * 300.00410 * 17 16 14 36 36 H 1.09001 * 109.47194 * 60.00591 * 17 16 14 37 37 H 1.07998 * 120.03064 * 0.02562 * 20 19 18 38 38 H 1.07995 * 119.96890 * 180.21221 * 21 20 19 39 39 H 1.08002 * 119.97703 * 179.97438 * 24 22 21 40 40 H 1.08002 * 120.02643 * 179.97438 * 25 24 22 41 41 H 1.08996 * 109.88020 * 118.13190 * 26 13 12 42 42 H 1.09002 * 109.87767 * 239.29718 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.4505 -2.6186 1.1770 11 6 0.3757 -2.6276 -1.2751 12 6 0.2713 -4.1656 -1.4269 13 7 1.5927 -4.6758 -1.0182 14 6 2.1326 -5.8510 -1.3976 15 8 3.2320 -6.1704 -0.9976 16 6 1.3702 -6.7680 -2.3190 17 6 2.2006 -8.0241 -2.5900 18 16 1.2832 -9.1277 -3.6996 19 6 2.3776 -10.4949 -3.8927 20 6 3.6089 -10.4969 -3.2491 21 6 4.4633 -11.5717 -3.3987 22 6 4.0977 -12.6422 -4.1973 23 9 4.9371 -13.6903 -4.3458 24 6 2.8730 -12.6405 -4.8437 25 6 2.0133 -11.5702 -4.6935 26 6 2.2212 -3.6933 -0.1231 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2276 -1.9345 1.2626 29 1 0.8730 -2.1827 -2.1371 30 1 -0.6072 -2.1824 -1.1210 31 1 0.0661 -4.4313 -2.4639 32 1 -0.5064 -4.5594 -0.7725 33 1 1.1704 -6.2542 -3.2593 34 1 0.4268 -7.0503 -1.8517 35 1 3.1442 -7.7422 -3.0571 36 1 2.3999 -8.5378 -1.6495 37 1 3.8962 -9.6604 -2.6293 38 1 5.4190 -11.5752 -2.8958 39 1 2.5904 -13.4764 -5.4664 40 1 1.0584 -11.5692 -5.1982 41 1 2.3891 -4.1392 0.8572 42 1 3.1676 -3.3578 -0.5472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:17 Heat of formation + Delta-G solvation = -125.045957 kcal Electronic energy + Delta-G solvation = -25683.272299 eV Core-core repulsion = 21667.939929 eV Total energy + Delta-G solvation = -4015.332370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.93284 -41.11506 -39.81414 -39.07352 -36.10847 -34.20796 -34.16361 -32.24178 -31.62982 -31.35545 -30.07152 -27.47068 -25.62277 -24.06167 -23.83888 -23.40489 -21.53614 -20.22871 -19.17537 -18.93100 -18.46231 -18.11472 -17.33883 -17.24009 -16.90620 -16.70796 -16.63470 -16.20533 -15.87263 -15.59002 -15.27563 -14.83746 -14.81755 -14.62435 -14.37885 -13.94295 -13.86199 -13.68374 -13.49308 -13.29688 -13.16052 -13.11634 -12.90356 -12.66676 -12.54042 -12.40345 -12.28752 -12.16548 -11.96726 -11.31054 -11.27552 -10.95555 -10.62289 -10.60681 -10.22079 -10.14440 -9.64566 -8.40595 -8.24689 -6.38750 -0.07930 0.14411 0.33378 1.27740 1.42384 1.44567 1.51100 1.56770 2.06533 2.39716 2.42569 3.00814 3.21932 3.51480 3.63220 3.66638 3.81654 3.82508 3.89654 4.01273 4.15052 4.27050 4.29239 4.37769 4.46340 4.57570 4.62987 4.63512 4.70481 4.78342 4.83999 4.92493 5.05642 5.08337 5.11723 5.17924 5.23769 5.47245 5.55326 5.74820 5.76859 6.08347 6.56905 6.65400 7.07944 7.31216 7.40706 8.80862 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.001861 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.232407 B =15045.623744 C =15454.322282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.039 3.961 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.564 4.564 8 H 0.049 0.951 9 C 0.233 3.767 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.610 5.610 14 C 0.524 3.476 15 O -0.591 6.591 16 C -0.109 4.109 17 C -0.091 4.091 18 S -0.086 6.086 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.138 4.138 22 C 0.075 3.925 23 F -0.146 7.146 24 C -0.130 4.130 25 C -0.073 4.073 26 C 0.129 3.871 27 H 0.272 0.728 28 H 0.380 0.620 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.043 0.957 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -20.326 -11.434 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.163 4.163 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.602 4.602 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.020 4.020 13 N -0.343 5.343 14 C 0.313 3.687 15 O -0.473 6.473 16 C -0.150 4.150 17 C -0.239 4.239 18 S 0.159 5.841 19 C -0.220 4.220 20 C -0.139 4.139 21 C -0.159 4.159 22 C 0.053 3.947 23 F -0.125 7.125 24 C -0.151 4.151 25 C -0.097 4.097 26 C 0.006 3.994 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.177 0.823 41 H 0.061 0.939 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.538 -20.706 -11.601 23.784 hybrid contribution 1.850 1.317 0.898 2.442 sum 0.312 -19.389 -10.703 22.149 Atomic orbital electron populations 1.69732 1.06407 1.28443 1.49619 1.25549 0.95888 1.01783 0.93084 0.85649 0.78552 0.79105 0.78513 1.19900 1.20239 1.20470 1.21692 0.93352 0.91894 1.53273 0.93226 1.19614 0.87582 0.90354 0.83093 1.86119 1.51871 1.56308 1.45902 1.23078 1.01471 0.93071 0.98872 1.22594 0.83375 0.94715 1.01303 1.48702 1.20065 1.18258 1.47249 1.20778 0.85915 0.80614 0.81432 1.90656 1.22710 1.74918 1.59010 1.21298 0.99634 0.93124 1.00928 1.23346 1.01472 0.97168 1.01959 1.85258 1.24962 1.14137 1.59752 1.22012 0.98080 0.99605 1.02346 1.21230 0.93140 0.99221 1.00278 1.21237 1.01746 0.93043 0.99841 1.17913 0.90070 0.85810 1.00898 1.91489 1.70711 1.55746 1.94528 1.21343 0.92234 1.00612 1.00882 1.20886 1.00620 0.90978 0.97193 1.21768 0.96297 0.88935 0.92419 0.91872 0.77036 0.92435 0.90159 0.87670 0.90638 0.85637 0.85789 0.89059 0.89110 0.84636 0.83372 0.81845 0.82348 0.93897 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.75 10.67 21.45 0.23 -44.52 16 2 C 0.04 1.94 5.28 84.65 0.45 2.39 16 3 Si 0.96 40.62 29.54 68.60 2.03 42.65 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.56 -29.23 8.22 25.60 0.21 -29.02 16 8 H 0.05 2.63 7.58 -2.91 -0.02 2.61 16 9 C 0.23 10.96 0.85 -10.35 -0.01 10.95 16 10 O -0.59 -29.07 13.07 -148.98 -1.95 -31.02 16 11 C -0.13 -5.06 5.47 31.99 0.17 -4.88 16 12 C 0.10 3.14 6.68 86.85 0.58 3.72 16 13 N -0.61 -21.86 3.33 -811.79 -2.70 -24.56 16 14 C 0.52 17.05 7.85 87.66 0.69 17.73 16 15 O -0.59 -23.56 16.31 -3.01 -0.05 -23.61 16 16 C -0.11 -2.29 4.71 29.85 0.14 -2.15 16 17 C -0.09 -1.84 3.62 71.98 0.26 -1.58 16 18 S -0.09 -1.49 21.92 -56.49 -1.24 -2.73 16 19 C -0.11 -1.91 6.11 22.61 0.14 -1.77 16 20 C -0.11 -2.13 9.36 22.41 0.21 -1.92 16 21 C -0.14 -2.43 10.02 22.29 0.22 -2.21 16 22 C 0.07 1.30 7.30 22.38 0.16 1.47 16 23 F -0.15 -2.76 17.26 44.97 0.78 -1.98 16 24 C -0.13 -1.82 10.02 22.30 0.22 -1.59 16 25 C -0.07 -1.05 9.79 22.41 0.22 -0.83 16 26 C 0.13 5.70 6.23 86.73 0.54 6.24 16 27 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 28 H 0.38 18.59 7.46 -74.06 -0.55 18.03 16 29 H 0.06 2.39 8.04 -2.38 -0.02 2.37 16 30 H 0.08 3.35 7.54 -2.39 -0.02 3.33 16 31 H 0.11 2.39 7.48 -2.39 -0.02 2.37 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.13 2.13 7.85 -2.39 -0.02 2.11 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 1.98 7.69 -2.39 -0.02 1.96 16 36 H 0.09 1.98 7.72 -2.39 -0.02 1.96 16 37 H 0.14 2.52 5.88 -2.91 -0.02 2.51 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 42 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 Total: -1.00 -60.33 366.64 1.81 -58.52 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.50 Total: 30.70 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.21 Total: -3.46 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -2.47 Total: -69.08 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -2.00 Total: -54.62 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.24 Total: -2.73 kcal Total: -60.33 1.81 -58.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.524 kcal (2) G-P(sol) polarization free energy of solvation -60.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds