Wall clock time and date at job start Tue Mar 31 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47162 * 240.00369 * 3 2 1 5 5 H 1.48498 * 109.46832 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47313 * 120.00220 * 3 2 1 7 7 C 1.37883 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00147 * 359.97438 * 7 2 1 10 10 O 1.42891 * 110.64014 * 56.85679 * 9 7 2 11 11 C 1.55152 * 110.72064 * 180.02562 * 9 7 2 12 12 C 1.54912 * 101.58321 * 153.86517 * 11 9 7 13 13 N 1.47423 * 104.82996 * 322.98599 * 12 11 9 14 14 C 1.34771 * 125.64634 * 204.08953 * 13 12 11 15 15 O 1.21288 * 119.99986 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00319 * 0.02985 * 14 13 12 17 17 S 1.81394 * 109.47410 * 179.97438 * 16 14 13 18 18 C 1.81398 * 103.00193 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47148 * 179.97438 * 18 17 16 20 20 C 1.38244 * 119.97491 * 269.72674 * 19 18 17 21 21 C 1.38200 * 120.02132 * 179.77094 * 20 19 18 22 22 C 1.38458 * 119.97680 * 0.50196 * 21 20 19 23 23 F 1.35094 * 120.02780 * 179.76937 * 22 21 20 24 24 C 1.38461 * 119.94499 * 359.75070 * 22 21 20 25 25 C 1.38193 * 119.98059 * 359.97438 * 24 22 21 26 26 C 1.47028 * 108.70174 * 24.35722 * 13 12 11 27 27 H 0.96998 * 120.00227 * 0.02562 * 1 2 3 28 28 H 0.96692 * 114.00718 * 303.14723 * 10 9 7 29 29 H 1.09004 * 111.00951 * 35.78509 * 11 9 7 30 30 H 1.09007 * 111.03570 * 271.95581 * 11 9 7 31 31 H 1.08997 * 110.36554 * 204.14722 * 12 11 9 32 32 H 1.08993 * 110.36342 * 81.82639 * 12 11 9 33 33 H 1.08998 * 109.47180 * 59.99787 * 16 14 13 34 34 H 1.09001 * 109.47086 * 299.99864 * 16 14 13 35 35 H 1.09000 * 109.46753 * 60.00559 * 18 17 16 36 36 H 1.09000 * 109.47055 * 299.99894 * 18 17 16 37 37 H 1.08000 * 119.98742 * 0.02562 * 20 19 18 38 38 H 1.08005 * 120.01111 * 180.25471 * 21 20 19 39 39 H 1.08009 * 120.01035 * 179.97438 * 24 22 21 40 40 H 1.07998 * 119.99487 * 180.02562 * 25 24 22 41 41 H 1.08999 * 109.87701 * 118.12912 * 26 13 12 42 42 H 1.08996 * 109.88066 * 239.29279 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 2.2334 -3.7002 -0.0005 12 6 1.3757 -4.8035 0.6679 13 7 0.5948 -4.1000 1.7016 14 6 0.0725 -4.6619 2.8097 15 8 -0.5557 -3.9840 3.5950 16 6 0.2691 -6.1326 3.0730 17 16 -0.5455 -6.5824 4.6301 18 6 -0.2042 -8.3584 4.7711 19 6 -0.8258 -8.8904 6.0368 20 6 -0.0991 -8.8981 7.2128 21 6 -0.6698 -9.3814 8.3750 22 6 -1.9661 -9.8676 8.3590 23 9 -2.5233 -10.3446 9.4935 24 6 -2.6910 -9.8642 7.1793 25 6 -2.1204 -9.3752 6.0196 26 6 0.4746 -2.6851 1.3202 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2689 -1.8415 -1.1659 29 1 3.1198 -3.4800 0.5945 30 1 2.5080 -3.9811 -1.0174 31 1 2.0167 -5.5577 1.1244 32 1 0.7105 -5.2621 -0.0636 33 1 1.3348 -6.3496 3.1450 34 1 -0.1647 -6.7092 2.2559 35 1 0.8733 -8.5200 4.8002 36 1 -0.6268 -8.8789 3.9117 37 1 0.9134 -8.5224 7.2242 38 1 -0.1033 -9.3835 9.2946 39 1 -3.7021 -10.2437 7.1655 40 1 -2.6857 -9.3721 5.0994 41 1 -0.5747 -2.4283 1.1750 42 1 0.9090 -2.0541 2.0955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:31 Heat of formation + Delta-G solvation = -122.843615 kcal Electronic energy + Delta-G solvation = -25626.627425 eV Core-core repulsion = 21611.390555 eV Total energy + Delta-G solvation = -4015.236870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.92471 -41.01549 -40.06825 -38.95803 -36.13168 -34.18262 -33.50240 -32.28488 -32.11241 -30.85506 -29.40249 -27.74220 -26.75976 -24.22691 -24.04104 -22.62474 -21.47100 -20.39556 -19.18525 -18.68301 -18.17714 -17.65134 -17.42336 -17.22065 -16.87537 -16.64559 -16.41110 -16.31220 -15.80648 -15.25232 -15.11287 -14.94155 -14.77217 -14.70560 -14.44927 -14.42801 -14.05497 -13.64413 -13.49973 -13.35656 -13.14403 -13.01797 -12.85458 -12.63054 -12.53786 -12.34658 -12.28929 -12.08053 -11.96018 -11.22495 -11.08797 -10.95900 -10.64751 -10.29824 -10.08085 -9.62565 -9.52311 -8.67354 -8.28731 -6.44505 -0.20309 0.27261 0.70857 1.41640 1.42396 1.50274 1.54741 1.60789 2.09745 2.36851 2.68339 2.97877 3.27029 3.46172 3.64873 3.72031 3.80933 3.96502 4.03552 4.11850 4.12608 4.24311 4.26450 4.30984 4.41472 4.55073 4.60788 4.64400 4.69261 4.97120 4.99591 5.00072 5.13090 5.14681 5.22784 5.23140 5.37715 5.48160 5.48620 5.74280 5.88804 6.02256 6.57682 6.64432 7.09276 7.27573 7.36680 8.77083 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.001914 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.876582 B =14622.473457 C =14964.192481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.589 6.589 11 C -0.113 4.113 12 C 0.104 3.896 13 N -0.612 5.612 14 C 0.525 3.475 15 O -0.584 6.584 16 C -0.102 4.102 17 S -0.243 6.243 18 C -0.047 4.047 19 C -0.090 4.090 20 C -0.075 4.075 21 C -0.159 4.159 22 C 0.080 3.920 23 F -0.150 7.150 24 C -0.160 4.160 25 C -0.076 4.076 26 C 0.120 3.880 27 H 0.271 0.729 28 H 0.378 0.622 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.026 0.974 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -22.928 9.005 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.398 6.398 11 C -0.151 4.151 12 C -0.018 4.018 13 N -0.345 5.345 14 C 0.314 3.686 15 O -0.465 6.465 16 C -0.253 4.253 17 S -0.015 6.015 18 C -0.194 4.194 19 C -0.091 4.091 20 C -0.095 4.095 21 C -0.178 4.178 22 C 0.060 3.940 23 F -0.128 7.128 24 C -0.178 4.178 25 C -0.096 4.096 26 C -0.004 4.004 27 H 0.080 0.920 28 H 0.229 0.771 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.045 0.955 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.037 -22.366 10.022 24.530 hybrid contribution 0.109 1.263 -0.356 1.316 sum 1.146 -21.103 9.666 23.240 Atomic orbital electron populations 1.69669 1.07153 1.28606 1.50374 1.25838 0.95804 1.02919 0.93145 0.85523 0.78348 0.78369 0.78920 1.19115 1.21088 1.19836 1.21861 0.94044 0.91416 1.52235 0.91281 1.19727 0.86415 0.93769 0.80975 1.86050 1.51436 1.52995 1.49351 1.22764 0.97133 0.93444 1.01772 1.22577 0.94056 0.95408 0.89721 1.48767 1.52925 1.10951 1.21842 1.20211 0.78600 0.89931 0.79882 1.90708 1.43041 1.65363 1.47425 1.23416 1.07159 0.94056 1.00621 1.88200 1.73724 1.10369 1.29171 1.22437 1.05341 0.92697 0.98923 1.19436 0.95079 1.00038 0.94580 1.21189 1.01120 0.96490 0.90712 1.21361 0.94046 1.01525 1.00863 1.18053 0.93365 0.99971 0.82573 1.91477 1.85603 1.86154 1.49593 1.21355 1.01754 1.03204 0.91503 1.21186 0.94149 0.95561 0.98688 1.22544 0.98968 0.79934 0.98931 0.91988 0.77139 0.89693 0.89015 0.86705 0.90439 0.84061 0.84487 0.86695 0.86838 0.83017 0.83167 0.83215 0.83129 0.95513 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.90 10.97 21.45 0.24 -49.66 16 2 C 0.02 1.22 5.28 84.66 0.45 1.67 16 3 Si 0.96 41.76 29.54 68.60 2.03 43.79 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.56 -28.70 8.11 25.60 0.21 -28.49 16 8 H 0.07 3.43 7.76 -2.91 -0.02 3.40 16 9 C 0.23 10.90 0.86 -10.35 -0.01 10.89 16 10 O -0.59 -29.32 13.08 -148.98 -1.95 -31.27 16 11 C -0.11 -3.99 6.23 31.99 0.20 -3.79 16 12 C 0.10 2.97 6.68 86.86 0.58 3.55 16 13 N -0.61 -23.29 3.33 -811.78 -2.70 -25.99 16 14 C 0.52 19.35 7.87 87.66 0.69 20.04 16 15 O -0.58 -27.75 16.19 -3.05 -0.05 -27.80 16 16 C -0.10 -2.32 5.43 71.24 0.39 -1.94 16 17 S -0.24 -6.01 20.86 -56.49 -1.18 -7.19 16 18 C -0.05 -0.62 6.07 71.24 0.43 -0.19 16 19 C -0.09 -1.35 5.14 -19.86 -0.10 -1.46 16 20 C -0.08 -1.09 9.70 22.26 0.22 -0.87 16 21 C -0.16 -2.46 10.03 22.31 0.22 -2.24 16 22 C 0.08 1.43 7.30 22.38 0.16 1.59 16 23 F -0.15 -2.95 17.27 44.97 0.78 -2.18 16 24 C -0.16 -2.49 10.03 22.31 0.22 -2.26 16 25 C -0.08 -1.12 9.70 22.26 0.22 -0.90 16 26 C 0.12 5.84 5.54 86.73 0.48 6.32 16 27 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.38 20.01 6.98 -74.06 -0.52 19.49 16 29 H 0.08 2.84 8.02 -2.38 -0.02 2.82 16 30 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 31 H 0.11 2.13 7.48 -2.39 -0.02 2.11 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.14 2.25 7.85 -2.39 -0.02 2.23 16 34 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.11 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.11 1.06 8.09 -2.39 -0.02 1.05 16 37 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 42 H 0.03 1.73 7.81 -2.39 -0.02 1.71 16 Total: -1.00 -70.61 371.62 2.04 -68.56 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.53 Total: 29.82 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 4.36 Total: 1.92 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.46 Total: -75.65 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -2.00 Total: -59.07 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.18 Total: -7.19 kcal Total: -70.61 2.04 -68.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.281 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds