Wall clock time and date at job start Tue Mar 31 2020 22:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 S 1.81400 * 109.47112 * 179.97438 * 17 16 14 19 19 C 1.76195 * 103.00421 * 180.02562 * 18 17 16 20 20 C 1.38899 * 120.08251 * 0.02562 * 19 18 17 21 21 C 1.38131 * 119.94333 * 180.02562 * 20 19 18 22 22 C 1.38280 * 120.11635 * 359.97438 * 21 20 19 23 23 C 1.38311 * 120.17427 * 0.02562 * 22 21 20 24 24 C 1.38257 * 120.05442 * 359.68399 * 23 22 21 25 25 F 1.35094 * 120.06390 * 180.29672 * 24 23 22 26 26 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 27 27 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 28 28 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 29 29 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 30 30 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 31 31 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 32 32 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 33 33 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 34 34 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 35 35 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 36 36 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 37 37 H 1.08000 * 120.02932 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.94311 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.91661 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.96989 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.36865 * 217.03325 * 26 13 12 42 42 H 1.08994 * 110.46657 * 94.75473 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 16 0.2548 -9.7908 1.5175 19 6 0.9391 -11.3166 0.9624 20 6 2.0269 -11.3185 0.0987 21 6 2.5607 -12.5164 -0.3351 22 6 2.0145 -13.7137 0.0894 23 6 0.9313 -13.7174 0.9495 24 6 0.3951 -12.5227 1.3929 25 9 -0.6591 -12.5262 2.2377 26 6 2.2259 -3.7031 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 -0.2788 -1.8355 -1.1497 29 1 1.0755 -2.3016 2.1726 30 1 -0.4922 -2.2572 1.3011 31 1 -0.5769 -4.5759 1.0886 32 1 0.5412 -4.5578 2.4790 33 1 0.8963 -7.0283 2.1656 34 1 -0.2106 -7.0175 0.7717 35 1 1.2261 -8.6758 -0.3828 36 1 2.3333 -8.6871 1.0108 37 1 2.4544 -10.3843 -0.2341 38 1 3.4062 -12.5178 -1.0071 39 1 2.4347 -14.6484 -0.2514 40 1 0.5070 -14.6545 1.2787 41 1 2.5186 -3.9536 -1.0209 42 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:20 Heat of formation + Delta-G solvation = -107.238320 kcal Electronic energy + Delta-G solvation = -25910.731157 eV Core-core repulsion = 21896.170984 eV Total energy + Delta-G solvation = -4014.560173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15752 -39.62581 -39.11246 -37.40791 -34.38537 -33.08406 -32.19538 -31.61777 -30.75142 -29.89663 -28.41097 -25.89070 -24.28039 -23.50710 -22.79716 -22.05003 -19.79784 -18.88998 -18.24221 -17.46866 -17.25836 -16.89999 -16.57789 -16.03619 -15.82919 -15.44882 -15.15857 -15.03595 -14.56203 -14.43123 -14.25868 -13.71162 -13.55528 -13.33593 -13.06657 -12.86093 -12.47756 -12.37671 -12.22812 -12.07841 -11.87701 -11.51855 -11.44589 -11.39023 -11.36147 -10.94740 -10.66915 -10.52460 -10.46385 -10.19308 -10.10875 -9.57159 -9.44932 -9.21918 -8.73524 -8.28256 -8.09103 -7.69500 -6.35575 -4.43456 0.67887 0.79890 1.11458 2.08335 2.92983 3.15636 3.16320 3.23975 3.26548 3.48526 3.86534 4.21514 4.35123 4.53096 4.56042 4.73269 4.82370 4.85635 4.89227 4.95554 5.24152 5.34040 5.47294 5.49928 5.58426 5.63745 5.67046 5.70993 5.78698 5.80018 5.95108 6.00401 6.20462 6.36235 6.43203 6.56762 6.80503 6.88003 7.23491 7.25874 7.67907 7.92039 8.02368 8.48396 8.59162 9.25678 9.41511 10.72174 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034190 B = 0.001964 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.755997 B =14255.531391 C =14770.804994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.140 4.140 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.529 3.471 15 O -0.557 6.557 16 C -0.121 4.121 17 C -0.092 4.092 18 S -0.094 6.094 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.137 4.137 24 C 0.112 3.888 25 F -0.130 7.130 26 C 0.119 3.881 27 H 0.270 0.730 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -21.817 3.805 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.178 4.178 12 C -0.025 4.025 13 N -0.335 5.335 14 C 0.315 3.685 15 O -0.436 6.436 16 C -0.163 4.163 17 C -0.240 4.240 18 S 0.152 5.848 19 C -0.234 4.234 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.158 4.158 24 C 0.086 3.914 25 F -0.108 7.108 26 C -0.003 4.003 27 H 0.080 0.920 28 H 0.238 0.762 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.196 -22.158 4.102 22.536 hybrid contribution 0.848 1.214 -0.447 1.547 sum 0.652 -20.944 3.655 21.271 Atomic orbital electron populations 1.69554 1.06005 1.27832 1.50335 1.24997 0.95035 0.99618 0.93385 0.86389 0.79779 0.82260 0.78399 1.20360 1.21011 1.19685 1.21470 0.93794 0.90161 1.51984 0.91611 1.19585 0.86043 0.90806 0.82781 1.86099 1.50977 1.52811 1.49621 1.23212 1.03168 0.89970 1.01475 1.22210 0.90095 0.97312 0.92900 1.48584 1.33044 1.04864 1.47041 1.19820 0.84764 0.82038 0.81831 1.90666 1.33185 1.80103 1.39691 1.21295 1.01269 0.91019 1.02690 1.23467 1.01913 0.94570 1.04086 1.85637 1.43376 0.94762 1.61008 1.21916 1.01299 0.96522 1.03617 1.21233 0.94912 0.99945 0.96899 1.21171 1.00125 0.91773 0.99808 1.21060 0.95435 0.98677 0.96921 1.21084 0.98238 0.96555 0.99894 1.17110 0.87739 0.92855 0.93672 1.91522 1.53957 1.97199 1.68168 1.22412 0.94527 0.85218 0.98094 0.92011 0.76173 0.91264 0.89770 0.92186 0.92651 0.88060 0.87920 0.88280 0.88348 0.84393 0.84856 0.84764 0.84300 0.91024 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.79 55.43 0.60 -21.96 16 2 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 3 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -13.55 8.25 -34.44 -0.28 -13.84 16 8 H 0.07 1.66 7.77 -52.49 -0.41 1.25 16 9 C 0.25 5.82 0.89 -89.62 -0.08 5.74 16 10 O -0.58 -14.66 13.18 -35.23 -0.46 -15.13 16 11 C -0.14 -2.86 5.64 -24.90 -0.14 -3.00 16 12 C 0.10 1.66 6.49 -3.06 -0.02 1.64 16 13 N -0.60 -11.34 3.33 -170.52 -0.57 -11.91 16 14 C 0.53 9.24 7.85 -10.99 -0.09 9.16 16 15 O -0.56 -11.30 16.24 5.56 0.09 -11.21 16 16 C -0.12 -1.55 4.90 -27.88 -0.14 -1.69 16 17 C -0.09 -1.09 3.62 37.16 0.13 -0.95 16 18 S -0.09 -1.10 21.53 -107.50 -2.31 -3.41 16 19 C -0.12 -1.35 6.11 -39.00 -0.24 -1.59 16 20 C -0.11 -1.05 9.36 -39.38 -0.37 -1.42 16 21 C -0.11 -0.86 10.04 -39.61 -0.40 -1.26 16 22 C -0.10 -0.71 10.04 -39.54 -0.40 -1.10 16 23 C -0.14 -1.14 10.02 -39.55 -0.40 -1.53 16 24 C 0.11 1.22 7.28 -39.24 -0.29 0.93 16 25 F -0.13 -1.56 16.76 2.25 0.04 -1.52 16 26 C 0.12 2.57 6.08 -2.53 -0.02 2.56 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.39 9.78 6.93 45.56 0.32 10.10 16 29 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 30 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.10 1.21 7.71 -51.93 -0.40 0.81 16 36 H 0.10 1.17 7.70 -51.92 -0.40 0.77 16 37 H 0.14 1.32 5.88 -52.49 -0.31 1.02 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.07 1.65 8.04 -51.93 -0.42 1.24 16 42 H 0.07 1.50 8.01 -51.93 -0.42 1.09 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -28.52 367.51 -9.86 -38.39 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -4.95 Total: 11.15 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.81 Total: -4.65 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.03 Total: -33.87 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.37 Total: -26.34 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.31 Total: -3.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.52 -9.86 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.853 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds