Wall clock time and date at job start Tue Mar 31 2020 22:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47110 * 270.00352 * 3 2 1 5 5 H 1.48504 * 109.47044 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00096 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 S 1.81400 * 109.47112 * 179.97438 * 17 16 14 19 19 C 1.76195 * 103.00421 * 180.02562 * 18 17 16 20 20 C 1.38899 * 120.08251 * 0.02562 * 19 18 17 21 21 C 1.38131 * 119.94333 * 180.02562 * 20 19 18 22 22 C 1.38280 * 120.11635 * 359.97438 * 21 20 19 23 23 C 1.38311 * 120.17427 * 0.02562 * 22 21 20 24 24 C 1.38257 * 120.05442 * 359.68399 * 23 22 21 25 25 F 1.35094 * 120.06390 * 180.29672 * 24 23 22 26 26 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 27 27 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 28 28 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 29 29 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 30 30 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 31 31 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 32 32 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 33 33 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 34 34 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 35 35 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 36 36 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 37 37 H 1.08000 * 120.02932 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.94311 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.91661 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.96989 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.36865 * 217.03325 * 26 13 12 42 42 H 1.08994 * 110.46657 * 94.75473 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 16 0.2548 -9.7908 1.5175 19 6 0.9391 -11.3166 0.9624 20 6 2.0269 -11.3185 0.0987 21 6 2.5607 -12.5164 -0.3351 22 6 2.0145 -13.7137 0.0894 23 6 0.9313 -13.7174 0.9495 24 6 0.3951 -12.5227 1.3929 25 9 -0.6591 -12.5262 2.2377 26 6 2.2259 -3.7031 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 -0.2788 -1.8355 -1.1497 29 1 1.0755 -2.3016 2.1726 30 1 -0.4922 -2.2572 1.3011 31 1 -0.5769 -4.5759 1.0886 32 1 0.5412 -4.5578 2.4790 33 1 0.8963 -7.0283 2.1656 34 1 -0.2106 -7.0175 0.7717 35 1 1.2261 -8.6758 -0.3828 36 1 2.3333 -8.6871 1.0108 37 1 2.4544 -10.3843 -0.2341 38 1 3.4062 -12.5178 -1.0071 39 1 2.4347 -14.6484 -0.2514 40 1 0.5070 -14.6545 1.2787 41 1 2.5186 -3.9536 -1.0209 42 1 3.1062 -3.4787 0.6010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:19 Heat of formation + Delta-G solvation = -123.469327 kcal Electronic energy + Delta-G solvation = -25911.434986 eV Core-core repulsion = 21896.170984 eV Total energy + Delta-G solvation = -4015.264003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97722 -41.10978 -39.77534 -39.04625 -36.12080 -34.19080 -34.13134 -32.32595 -31.53903 -31.39378 -30.04040 -27.48934 -25.62760 -24.17638 -23.87659 -23.21062 -21.55120 -20.26183 -19.19216 -19.03768 -18.45722 -17.91441 -17.35983 -17.21588 -16.95101 -16.74651 -16.68464 -16.27657 -15.83827 -15.76859 -15.17861 -15.07615 -14.73895 -14.47641 -14.26771 -13.96737 -13.72148 -13.56366 -13.50885 -13.36813 -13.19341 -13.07100 -12.97412 -12.64235 -12.58852 -12.44873 -12.26214 -12.13525 -11.87423 -11.34415 -11.31389 -10.97990 -10.90222 -10.63950 -10.15616 -9.91153 -9.60479 -8.54133 -8.25905 -6.40194 -0.01148 0.12345 0.23882 1.21166 1.41953 1.45415 1.53426 1.55961 2.07104 2.39712 2.50324 2.99167 3.15106 3.49587 3.61068 3.70260 3.76954 3.84521 3.97637 4.03505 4.21910 4.29333 4.32802 4.35080 4.39830 4.56119 4.60457 4.61344 4.70026 4.74342 4.88680 4.90547 5.00471 5.17432 5.19686 5.25405 5.37616 5.44099 5.53049 5.77184 5.80591 6.04671 6.57595 6.64223 7.07192 7.31129 7.44669 8.80370 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034190 B = 0.001964 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.755997 B =14255.531391 C =14770.804994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.035 3.965 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.233 3.767 10 O -0.596 6.596 11 C -0.131 4.131 12 C 0.104 3.896 13 N -0.609 5.609 14 C 0.526 3.474 15 O -0.590 6.590 16 C -0.110 4.110 17 C -0.082 4.082 18 S -0.105 6.105 19 C -0.141 4.141 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.135 4.135 24 C 0.087 3.913 25 F -0.143 7.143 26 C 0.124 3.876 27 H 0.272 0.728 28 H 0.381 0.619 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.046 0.954 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -23.633 4.525 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.166 4.166 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.599 4.599 8 H 0.075 0.925 9 C 0.192 3.808 10 O -0.406 6.406 11 C -0.170 4.170 12 C -0.018 4.018 13 N -0.341 5.341 14 C 0.314 3.686 15 O -0.472 6.472 16 C -0.150 4.150 17 C -0.231 4.231 18 S 0.140 5.860 19 C -0.254 4.254 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.155 4.155 24 C 0.061 3.939 25 F -0.121 7.121 26 C 0.002 3.998 27 H 0.082 0.918 28 H 0.233 0.767 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.180 0.820 41 H 0.065 0.935 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.045 -23.998 4.834 24.481 hybrid contribution 0.850 1.683 -0.743 2.026 sum 0.804 -22.316 4.092 22.702 Atomic orbital electron populations 1.69616 1.06680 1.28491 1.50157 1.25619 0.95846 1.02092 0.93062 0.85516 0.78767 0.79014 0.78059 1.20634 1.20347 1.19521 1.21711 0.93695 0.91615 1.52837 0.92467 1.19794 0.86443 0.90863 0.83668 1.86085 1.51147 1.52548 1.50843 1.23001 1.01769 0.92745 0.99496 1.22248 0.90223 0.94555 0.94752 1.48649 1.33210 1.04886 1.47318 1.20626 0.84665 0.82033 0.81239 1.90648 1.34841 1.80511 1.41187 1.21270 1.00654 0.89625 1.03490 1.23309 1.01871 0.94303 1.03606 1.85529 1.43673 0.95484 1.61339 1.22008 1.02351 0.96142 1.04917 1.21346 0.94931 1.00851 0.97167 1.21541 1.00434 0.91320 0.99502 1.21507 0.94298 0.99812 0.95377 1.21445 0.98207 0.96486 0.99396 1.17461 0.88151 0.93758 0.94492 1.91483 1.54644 1.97296 1.68717 1.22151 0.94679 0.85933 0.97078 0.91803 0.76715 0.91539 0.91029 0.90715 0.88846 0.85647 0.86483 0.89105 0.88601 0.84789 0.82456 0.81175 0.82009 0.93523 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.86 10.79 21.45 0.23 -45.63 16 2 C 0.03 1.74 5.30 84.65 0.45 2.19 16 3 Si 0.96 40.49 29.54 68.60 2.03 42.52 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.56 -28.80 8.25 25.60 0.21 -28.59 16 8 H 0.06 2.95 7.77 -2.91 -0.02 2.93 16 9 C 0.23 11.03 0.89 -10.15 -0.01 11.03 16 10 O -0.60 -30.50 13.18 -148.98 -1.96 -32.46 16 11 C -0.13 -5.32 5.64 31.78 0.18 -5.14 16 12 C 0.10 3.33 6.49 86.73 0.56 3.90 16 13 N -0.61 -22.40 3.33 -811.79 -2.70 -25.10 16 14 C 0.53 17.95 7.85 87.66 0.69 18.64 16 15 O -0.59 -24.12 16.24 -3.04 -0.05 -24.17 16 16 C -0.11 -2.60 4.90 29.85 0.15 -2.46 16 17 C -0.08 -1.90 3.62 71.98 0.26 -1.63 16 18 S -0.11 -2.41 21.53 -56.49 -1.22 -3.62 16 19 C -0.14 -3.10 6.11 22.64 0.14 -2.96 16 20 C -0.12 -2.25 9.36 22.40 0.21 -2.04 16 21 C -0.11 -1.45 10.04 22.25 0.22 -1.23 16 22 C -0.09 -0.97 10.04 22.30 0.22 -0.75 16 23 C -0.14 -1.93 10.02 22.29 0.22 -1.70 16 24 C 0.09 1.81 7.28 22.49 0.16 1.97 16 25 F -0.14 -3.38 16.76 44.97 0.75 -2.62 16 26 C 0.12 5.47 6.08 86.86 0.53 6.00 16 27 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 28 H 0.38 19.77 6.93 -74.05 -0.51 19.26 16 29 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 30 H 0.07 3.06 7.85 -2.39 -0.02 3.04 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.13 2.42 8.14 -2.39 -0.02 2.41 16 34 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.09 2.22 7.71 -2.39 -0.02 2.20 16 36 H 0.10 2.24 7.70 -2.39 -0.02 2.22 16 37 H 0.13 2.55 5.88 -2.91 -0.02 2.53 16 38 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 42 H 0.07 3.16 8.01 -2.39 -0.02 3.14 16 Total: -1.00 -62.83 367.51 1.82 -61.02 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.54 Total: 32.86 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.20 Total: -2.78 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -2.47 Total: -70.73 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -2.01 Total: -56.63 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.75 Total: -2.62 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.22 Total: -3.62 kcal Total: -62.83 1.82 -61.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.454 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds