Wall clock time and date at job start Tue Mar 31 2020 22:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 S 1.81401 * 109.47048 * 179.97438 * 17 16 14 19 19 C 1.76202 * 102.99781 * 179.97438 * 18 17 16 20 20 C 1.38893 * 120.08604 * 359.72721 * 19 18 17 21 21 C 1.38138 * 119.94307 * 179.74671 * 20 19 18 22 22 C 1.38294 * 120.11394 * 0.53081 * 21 20 19 23 23 C 1.38301 * 120.17473 * 359.74138 * 22 21 20 24 24 C 1.38266 * 120.05198 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.05637 * 179.97438 * 24 23 22 26 26 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 29 29 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 30 30 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 31 31 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 32 32 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 33 33 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 34 34 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 35 35 H 1.08999 * 109.47124 * 299.99743 * 17 16 14 36 36 H 1.09003 * 109.47348 * 60.00099 * 17 16 14 37 37 H 1.07997 * 120.02903 * 0.02562 * 20 19 18 38 38 H 1.07996 * 119.94326 * 180.27282 * 21 20 19 39 39 H 1.07999 * 119.91014 * 179.76722 * 22 21 20 40 40 H 1.07995 * 119.97385 * 179.97438 * 23 22 21 41 41 H 1.09007 * 110.36818 * 265.28667 * 26 13 12 42 42 H 1.09006 * 110.37032 * 142.96345 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 16 0.0953 -9.6895 -1.8584 19 6 0.8277 -11.2436 -1.4671 20 6 1.9977 -11.2937 -0.7203 21 6 2.5664 -12.5139 -0.4108 22 6 1.9789 -13.6853 -0.8526 23 6 0.8170 -13.6408 -1.6013 24 6 0.2385 -12.4236 -1.9102 25 9 -0.8963 -12.3801 -2.6421 26 6 2.2179 -3.6980 -0.1706 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1933 -1.9347 1.2973 29 1 -0.6088 -2.1850 -1.1167 30 1 0.8679 -2.1724 -2.1357 31 1 -0.6790 -4.5125 -1.0364 32 1 0.2993 -4.4051 -2.5249 33 1 -0.2895 -6.9685 -0.9041 34 1 0.6774 -6.8903 -2.3965 35 1 2.2162 -8.6103 -1.4906 36 1 1.2498 -8.6890 0.0021 37 1 2.4599 -10.3796 -0.3780 38 1 3.4737 -12.5530 0.1737 39 1 2.4285 -14.6373 -0.6119 40 1 0.3612 -14.5576 -1.9450 41 1 3.0360 -3.4358 -0.8417 42 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:22 Heat of formation + Delta-G solvation = -107.222112 kcal Electronic energy + Delta-G solvation = -25915.284512 eV Core-core repulsion = 21900.725041 eV Total energy + Delta-G solvation = -4014.559470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.15646 -39.62824 -39.11233 -37.41661 -34.36963 -33.08372 -32.27749 -31.61876 -30.75045 -29.85255 -28.41372 -25.88125 -24.28062 -23.50699 -22.79471 -22.03926 -19.82374 -18.89042 -18.24311 -17.45756 -17.23176 -16.89498 -16.57914 -16.03550 -15.82972 -15.44768 -15.16996 -15.01205 -14.56339 -14.43788 -14.29198 -13.71788 -13.55889 -13.33508 -13.06544 -12.85986 -12.48126 -12.37813 -12.24799 -12.07491 -11.89127 -11.52481 -11.43815 -11.39225 -11.35455 -10.95642 -10.66465 -10.50629 -10.46453 -10.19345 -10.09196 -9.56507 -9.41082 -9.21925 -8.74854 -8.28514 -8.09475 -7.69549 -6.34295 -4.42693 0.67853 0.79819 1.11438 2.08282 2.92924 3.15043 3.15572 3.24517 3.28521 3.48559 3.86481 4.22169 4.35093 4.53104 4.56051 4.73204 4.82944 4.85577 4.89296 4.96240 5.24111 5.33951 5.48280 5.49924 5.58394 5.63683 5.65461 5.70115 5.78641 5.79808 5.96018 6.00328 6.21168 6.36108 6.43148 6.56850 6.82349 6.88435 7.24361 7.29238 7.67762 7.93963 8.02509 8.48504 8.60874 9.24684 9.33605 10.72925 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.001967 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.739945 B =14228.329604 C =14752.016857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.583 6.583 11 C -0.136 4.136 12 C 0.096 3.904 13 N -0.604 5.604 14 C 0.529 3.471 15 O -0.557 6.557 16 C -0.121 4.121 17 C -0.092 4.092 18 S -0.094 6.094 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.137 4.137 24 C 0.112 3.888 25 F -0.130 7.130 26 C 0.120 3.880 27 H 0.268 0.732 28 H 0.382 0.618 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 -21.644 -4.746 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.174 4.174 12 C -0.027 4.027 13 N -0.335 5.335 14 C 0.315 3.685 15 O -0.437 6.437 16 C -0.163 4.163 17 C -0.240 4.240 18 S 0.152 5.848 19 C -0.233 4.233 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.158 4.158 24 C 0.086 3.914 25 F -0.108 7.108 26 C -0.002 4.002 27 H 0.078 0.922 28 H 0.231 0.769 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.664 -21.958 -5.029 22.536 hybrid contribution 0.865 1.187 0.386 1.518 sum 0.200 -20.771 -4.643 21.284 Atomic orbital electron populations 1.69724 1.05952 1.27602 1.50085 1.25001 0.95041 0.99582 0.93443 0.86358 0.80181 0.82687 0.77738 1.19563 1.20811 1.20755 1.21476 0.93790 0.90097 1.52047 0.91631 1.19621 0.86983 0.90720 0.82023 1.86133 1.54185 1.53853 1.45019 1.23174 1.03303 0.89823 1.01149 1.22242 0.88514 0.96950 0.94975 1.48596 1.27496 1.04889 1.52564 1.19820 0.85924 0.81846 0.80869 1.90665 1.30419 1.78446 1.44136 1.21295 1.00571 0.91144 1.03265 1.23466 1.01096 0.94911 1.04560 1.85641 1.36037 0.94796 1.68310 1.21914 1.00248 0.96684 1.04504 1.21232 0.94089 0.99711 0.97956 1.21176 1.00252 0.91765 0.99687 1.21060 0.94889 0.98918 0.97225 1.21082 0.97484 0.96189 1.01012 1.17114 0.85058 0.92941 0.96266 1.91524 1.47648 1.97145 1.74530 1.22401 0.93807 0.86084 0.97863 0.92222 0.76851 0.89396 0.91302 0.92215 0.92656 0.87920 0.88062 0.88344 0.88287 0.84394 0.84856 0.84765 0.84300 0.90915 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.38 10.73 55.43 0.59 -21.78 16 2 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.56 8.27 -34.44 -0.28 -13.84 16 8 H 0.07 1.66 7.79 -52.49 -0.41 1.26 16 9 C 0.25 5.76 0.88 -89.62 -0.08 5.68 16 10 O -0.58 -14.41 13.18 -35.23 -0.46 -14.87 16 11 C -0.14 -2.80 5.38 -24.90 -0.13 -2.93 16 12 C 0.10 1.64 6.49 -3.06 -0.02 1.62 16 13 N -0.60 -11.33 3.33 -170.52 -0.57 -11.90 16 14 C 0.53 9.23 7.85 -10.99 -0.09 9.15 16 15 O -0.56 -11.30 16.24 5.56 0.09 -11.20 16 16 C -0.12 -1.55 4.90 -27.89 -0.14 -1.69 16 17 C -0.09 -1.09 3.62 37.16 0.13 -0.95 16 18 S -0.09 -1.10 21.53 -107.50 -2.31 -3.41 16 19 C -0.12 -1.35 6.11 -39.01 -0.24 -1.59 16 20 C -0.11 -1.05 9.36 -39.38 -0.37 -1.42 16 21 C -0.11 -0.86 10.04 -39.60 -0.40 -1.26 16 22 C -0.10 -0.71 10.04 -39.54 -0.40 -1.10 16 23 C -0.14 -1.14 10.02 -39.55 -0.40 -1.53 16 24 C 0.11 1.22 7.28 -39.24 -0.29 0.93 16 25 F -0.13 -1.56 16.76 2.25 0.04 -1.52 16 26 C 0.12 2.59 6.08 -2.53 -0.02 2.57 16 27 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 28 H 0.38 9.42 7.51 45.56 0.34 9.76 16 29 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 30 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.17 7.69 -51.92 -0.40 0.77 16 36 H 0.10 1.21 7.72 -51.92 -0.40 0.81 16 37 H 0.14 1.32 5.88 -52.49 -0.31 1.01 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.07 1.52 8.03 -51.92 -0.42 1.11 16 42 H 0.07 1.64 8.04 -51.93 -0.42 1.22 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -28.48 367.49 -9.82 -38.30 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.91 Total: 10.79 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.80 Total: -4.66 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.03 Total: -33.68 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.37 Total: -26.08 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.31 Total: -3.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.48 -9.82 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.927 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds