Wall clock time and date at job start Tue Mar 31 2020 22:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 S 1.81401 * 109.47048 * 179.97438 * 17 16 14 19 19 C 1.76202 * 102.99781 * 179.97438 * 18 17 16 20 20 C 1.38893 * 120.08604 * 359.72721 * 19 18 17 21 21 C 1.38138 * 119.94307 * 179.74671 * 20 19 18 22 22 C 1.38294 * 120.11394 * 0.53081 * 21 20 19 23 23 C 1.38301 * 120.17473 * 359.74138 * 22 21 20 24 24 C 1.38266 * 120.05198 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.05637 * 179.97438 * 24 23 22 26 26 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 29 29 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 30 30 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 31 31 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 32 32 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 33 33 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 34 34 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 35 35 H 1.08999 * 109.47124 * 299.99743 * 17 16 14 36 36 H 1.09003 * 109.47348 * 60.00099 * 17 16 14 37 37 H 1.07997 * 120.02903 * 0.02562 * 20 19 18 38 38 H 1.07996 * 119.94326 * 180.27282 * 21 20 19 39 39 H 1.07999 * 119.91014 * 179.76722 * 22 21 20 40 40 H 1.07995 * 119.97385 * 179.97438 * 23 22 21 41 41 H 1.09007 * 110.36818 * 265.28667 * 26 13 12 42 42 H 1.09006 * 110.37032 * 142.96345 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 16 0.0953 -9.6895 -1.8584 19 6 0.8277 -11.2436 -1.4671 20 6 1.9977 -11.2937 -0.7203 21 6 2.5664 -12.5139 -0.4108 22 6 1.9789 -13.6853 -0.8526 23 6 0.8170 -13.6408 -1.6013 24 6 0.2385 -12.4236 -1.9102 25 9 -0.8963 -12.3801 -2.6421 26 6 2.2179 -3.6980 -0.1706 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1933 -1.9347 1.2973 29 1 -0.6088 -2.1850 -1.1167 30 1 0.8679 -2.1724 -2.1357 31 1 -0.6790 -4.5125 -1.0364 32 1 0.2993 -4.4051 -2.5249 33 1 -0.2895 -6.9685 -0.9041 34 1 0.6774 -6.8903 -2.3965 35 1 2.2162 -8.6103 -1.4906 36 1 1.2498 -8.6890 0.0021 37 1 2.4599 -10.3796 -0.3780 38 1 3.4737 -12.5530 0.1737 39 1 2.4285 -14.6373 -0.6119 40 1 0.3612 -14.5576 -1.9450 41 1 3.0360 -3.4358 -0.8417 42 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:22 Heat of formation + Delta-G solvation = -123.477803 kcal Electronic energy + Delta-G solvation = -25915.989411 eV Core-core repulsion = 21900.725041 eV Total energy + Delta-G solvation = -4015.264370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.97576 -41.11212 -39.77452 -39.05180 -36.09593 -34.22017 -34.17711 -32.32479 -31.50554 -31.38231 -30.04385 -27.48095 -25.62729 -24.17551 -23.86916 -23.20802 -21.57509 -20.26378 -19.14344 -19.03776 -18.45642 -17.91601 -17.36033 -17.21771 -16.93804 -16.74295 -16.67958 -16.29026 -15.86486 -15.77342 -15.18160 -15.07899 -14.73756 -14.47583 -14.26786 -13.98909 -13.72885 -13.55517 -13.51186 -13.37036 -13.21464 -13.04840 -12.97291 -12.65415 -12.58048 -12.44844 -12.25876 -12.13487 -11.85400 -11.34332 -11.27402 -10.97536 -10.90196 -10.64780 -10.15309 -9.91092 -9.60622 -8.54137 -8.24668 -6.39525 -0.01119 0.12355 0.23922 1.21181 1.40392 1.45342 1.54315 1.56146 2.07100 2.39966 2.50333 3.00410 3.15118 3.49445 3.60327 3.70296 3.76947 3.83565 3.97684 4.02889 4.21945 4.29361 4.33488 4.35429 4.39943 4.56056 4.60483 4.61340 4.70313 4.74425 4.89036 4.90585 5.00497 5.17740 5.19708 5.25548 5.37619 5.45822 5.55618 5.77554 5.80607 6.07078 6.57814 6.65331 7.07170 7.30777 7.39231 8.81024 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.001967 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.739945 B =14228.329604 C =14752.016857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.037 3.963 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.561 4.561 8 H 0.054 0.946 9 C 0.232 3.768 10 O -0.593 6.593 11 C -0.127 4.127 12 C 0.103 3.897 13 N -0.609 5.609 14 C 0.526 3.474 15 O -0.590 6.590 16 C -0.110 4.110 17 C -0.082 4.082 18 S -0.105 6.105 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.135 4.135 24 C 0.087 3.913 25 F -0.143 7.143 26 C 0.125 3.875 27 H 0.271 0.729 28 H 0.378 0.622 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 -23.423 -5.531 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.599 4.599 8 H 0.072 0.928 9 C 0.192 3.808 10 O -0.402 6.402 11 C -0.166 4.166 12 C -0.019 4.019 13 N -0.341 5.341 14 C 0.314 3.686 15 O -0.472 6.472 16 C -0.150 4.150 17 C -0.231 4.231 18 S 0.140 5.860 19 C -0.254 4.254 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.155 4.155 24 C 0.061 3.939 25 F -0.121 7.121 26 C 0.002 3.998 27 H 0.080 0.920 28 H 0.227 0.773 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.180 0.820 41 H 0.092 0.908 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.667 -23.759 -5.827 24.472 hybrid contribution 0.919 1.646 0.690 2.007 sum 0.252 -22.113 -5.137 22.703 Atomic orbital electron populations 1.69784 1.06560 1.28288 1.49786 1.25596 0.95852 1.01954 0.93096 0.85500 0.78858 0.79433 0.77752 1.19879 1.20095 1.20710 1.21693 0.93567 0.91626 1.53031 0.92757 1.19800 0.87649 0.90682 0.82646 1.86121 1.54252 1.53673 1.46144 1.22952 1.01723 0.92592 0.99306 1.22271 0.88436 0.94116 0.97092 1.48656 1.27596 1.05010 1.52797 1.20622 0.86023 0.81727 0.80182 1.90648 1.32122 1.78848 1.45569 1.21270 0.99678 0.89944 1.04153 1.23308 1.01078 0.94598 1.04097 1.85534 1.36283 0.95601 1.68625 1.22006 1.01196 0.96268 1.05939 1.21346 0.93999 1.00662 0.98285 1.21546 1.00811 0.91252 0.99186 1.21507 0.93917 1.00127 0.95444 1.21443 0.97643 0.96023 1.00423 1.17465 0.85293 0.93888 0.97223 1.91485 1.48397 1.97255 1.75009 1.22138 0.93962 0.86674 0.96983 0.91965 0.77258 0.90636 0.91908 0.90636 0.88974 0.86452 0.85694 0.88605 0.89091 0.84784 0.82452 0.81176 0.82011 0.90847 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.31 10.73 21.45 0.23 -45.08 16 2 C 0.04 1.83 5.27 84.66 0.45 2.28 16 3 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.56 -28.88 8.27 25.60 0.21 -28.67 16 8 H 0.05 2.83 7.79 -2.91 -0.02 2.81 16 9 C 0.23 10.98 0.88 -10.15 -0.01 10.97 16 10 O -0.59 -29.86 13.18 -148.98 -1.96 -31.82 16 11 C -0.13 -5.17 5.38 31.78 0.17 -5.00 16 12 C 0.10 3.30 6.49 86.73 0.56 3.86 16 13 N -0.61 -22.39 3.33 -811.79 -2.70 -25.09 16 14 C 0.53 17.93 7.85 87.66 0.69 18.62 16 15 O -0.59 -24.09 16.24 -3.03 -0.05 -24.14 16 16 C -0.11 -2.60 4.90 29.85 0.15 -2.46 16 17 C -0.08 -1.89 3.62 71.98 0.26 -1.63 16 18 S -0.11 -2.41 21.53 -56.49 -1.22 -3.62 16 19 C -0.14 -3.10 6.11 22.64 0.14 -2.96 16 20 C -0.12 -2.25 9.36 22.40 0.21 -2.04 16 21 C -0.11 -1.45 10.04 22.26 0.22 -1.22 16 22 C -0.09 -0.97 10.04 22.30 0.22 -0.75 16 23 C -0.14 -1.92 10.02 22.29 0.22 -1.70 16 24 C 0.09 1.81 7.28 22.49 0.16 1.97 16 25 F -0.14 -3.38 16.76 44.97 0.75 -2.63 16 26 C 0.13 5.50 6.08 86.85 0.53 6.03 16 27 H 0.27 12.90 8.31 -92.70 -0.77 12.13 16 28 H 0.38 19.06 7.51 -74.05 -0.56 18.51 16 29 H 0.08 3.25 7.54 -2.39 -0.02 3.23 16 30 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 2.24 7.69 -2.39 -0.02 2.22 16 36 H 0.09 2.22 7.72 -2.39 -0.02 2.20 16 37 H 0.13 2.55 5.88 -2.91 -0.02 2.53 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.07 3.15 8.03 -2.38 -0.02 3.13 16 42 H 0.05 2.25 8.04 -2.38 -0.02 2.23 16 Total: -1.00 -62.61 367.49 1.76 -60.84 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.49 Total: 31.68 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.19 Total: -2.69 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -2.47 Total: -70.16 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -2.01 Total: -55.96 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.75 Total: -2.63 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.22 Total: -3.62 kcal Total: -62.61 1.76 -60.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.636 kcal (2) G-P(sol) polarization free energy of solvation -62.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds