Wall clock time and date at job start Tue Mar 31 2020 22:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47006 * 2 1 4 4 C 1.50706 * 109.47113 * 119.99536 * 2 1 3 5 5 N 1.31933 * 119.01661 * 299.98338 * 4 2 1 6 6 C 1.32141 * 121.05442 * 179.97438 * 5 4 2 7 7 C 1.38987 * 119.12304 * 359.75011 * 6 5 4 8 8 Cl 1.73599 * 120.88472 * 180.25040 * 7 6 5 9 9 C 1.39640 * 118.22766 * 0.51080 * 7 6 5 10 10 C 1.48365 * 120.56189 * 179.76462 * 9 7 6 11 11 O 1.21493 * 120.00166 * 359.71872 * 10 9 7 12 12 N 1.34777 * 119.99890 * 179.44099 * 10 9 7 13 13 C 1.47022 * 125.64649 * 0.30215 * 12 10 9 14 14 C 1.54325 * 107.26808 * 181.01926 * 13 12 10 15 15 C 1.55160 * 102.94500 * 22.19007 * 14 13 12 16 16 O 1.42905 * 110.99951 * 82.57234 * 15 14 13 17 17 C 1.50696 * 111.00782 * 206.38204 * 15 14 13 18 18 H 1.07999 * 119.99597 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00049 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99920 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00074 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46701 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47215 * 120.00235 * 21 19 17 24 24 H 1.48499 * 109.46743 * 240.00518 * 21 19 17 25 25 C 1.47427 * 125.64685 * 179.97438 * 12 10 9 26 26 N 1.31516 * 119.02046 * 120.00089 * 4 2 1 27 27 H 1.08998 * 109.46950 * 300.00210 * 1 2 3 28 28 H 1.09004 * 109.46720 * 60.00722 * 1 2 3 29 29 H 1.09004 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47655 * 239.99617 * 2 1 3 31 31 H 1.09006 * 109.47155 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47053 * 299.99713 * 3 2 1 33 33 H 1.08998 * 109.47438 * 60.00088 * 3 2 1 34 34 H 1.07996 * 120.43767 * 180.02562 * 6 5 4 35 35 H 1.08992 * 109.88491 * 300.43504 * 13 12 10 36 36 H 1.09001 * 109.88009 * 61.45039 * 13 12 10 37 37 H 1.09004 * 110.71878 * 140.55674 * 14 13 12 38 38 H 1.08996 * 110.72026 * 263.83070 * 14 13 12 39 39 H 0.96703 * 113.99696 * 180.02562 * 16 15 14 40 40 H 0.97003 * 119.99817 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.36625 * 274.74765 * 25 12 10 42 42 H 1.08998 * 110.36643 * 37.07451 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7021 -0.2426 2.4192 6 6 2.1197 -0.8340 3.5246 7 6 2.9151 -1.9695 3.4252 8 17 3.4837 -2.7864 4.8475 9 6 3.2491 -2.4324 2.1508 10 6 4.0995 -3.6367 1.9846 11 8 4.5158 -4.2261 2.9621 12 7 4.4057 -4.0802 0.7493 13 6 3.9713 -3.4657 -0.5138 14 6 4.5386 -4.3275 -1.6614 15 6 4.7866 -5.6978 -0.9771 16 8 3.5839 -6.4677 -0.9216 17 6 5.8811 -6.4611 -1.6773 18 1 6.3743 -6.0315 -2.5367 19 6 6.2536 -7.7074 -1.2202 20 7 5.6533 -8.2303 -0.1734 21 14 7.6110 -8.6532 -2.0878 22 1 8.1207 -7.8520 -3.2294 23 1 8.7181 -8.9170 -1.1340 24 1 7.0725 -9.9427 -2.5901 25 6 5.2371 -5.2579 0.4407 26 7 2.7872 -1.7778 1.0876 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.8430 -0.4428 4.4924 35 1 2.8827 -3.4515 -0.5640 36 1 4.3589 -2.4493 -0.5839 37 1 3.8105 -4.4248 -2.4668 38 1 5.4730 -3.9076 -2.0335 39 1 3.6895 -7.3324 -0.5018 40 1 5.9152 -9.1073 0.1480 41 1 6.2929 -4.9869 0.4389 42 1 5.0500 -6.0537 1.1617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:01 Heat of formation + Delta-G solvation = -51.222402 kcal Electronic energy + Delta-G solvation = -27817.661616 eV Core-core repulsion = 23823.406731 eV Total energy + Delta-G solvation = -3994.254886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62825 -40.85825 -39.02565 -37.87768 -36.46792 -36.20996 -35.11528 -34.16596 -32.15017 -31.82148 -29.67855 -28.00822 -27.84187 -26.35130 -25.60869 -24.20941 -22.44227 -21.46956 -20.53642 -19.47910 -19.11761 -18.47864 -17.42141 -17.17175 -17.11168 -16.78278 -16.48456 -16.09353 -15.95482 -15.10843 -15.06803 -14.86596 -14.76810 -14.66368 -14.03636 -13.77089 -13.52040 -13.40943 -13.22671 -13.10609 -12.90858 -12.88691 -12.71952 -12.37832 -12.28330 -12.20873 -12.17811 -12.09447 -12.07912 -12.00547 -11.84687 -11.46991 -11.17810 -10.67698 -10.42768 -10.37061 -10.25446 -9.53483 -8.26901 -6.43760 -0.91623 -0.43104 0.77972 1.41127 1.44900 1.53566 1.55822 1.72549 2.37430 2.44494 2.51357 2.75380 2.99516 3.10502 3.32553 3.65839 3.80827 4.01736 4.11418 4.15990 4.19600 4.29140 4.39829 4.48822 4.69670 4.78921 4.86075 4.87380 4.97899 4.99061 4.99247 5.08685 5.16552 5.24018 5.36566 5.37696 5.40843 5.44423 5.49859 5.75276 6.02463 6.44107 6.62944 6.66247 6.90925 7.29030 7.38059 8.79138 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003608 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.990285 B = 7759.546417 C = 9225.231529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.134 4.134 4 C 0.318 3.682 5 N -0.482 5.482 6 C 0.182 3.818 7 C -0.116 4.116 8 Cl -0.009 7.009 9 C 0.136 3.864 10 C 0.555 3.445 11 O -0.548 6.548 12 N -0.588 5.588 13 C 0.131 3.869 14 C -0.116 4.116 15 C 0.234 3.766 16 O -0.590 6.590 17 C -0.555 4.555 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.919 5.919 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.280 1.280 25 C 0.106 3.894 26 N -0.484 5.484 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.224 0.776 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.377 0.623 40 H 0.271 0.729 41 H 0.054 0.946 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 19.455 2.825 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 C -0.192 4.192 4 C 0.051 3.949 5 N -0.196 5.196 6 C 0.012 3.988 7 C -0.149 4.149 8 Cl 0.020 6.980 9 C -0.012 4.012 10 C 0.341 3.659 11 O -0.426 6.426 12 N -0.319 5.319 13 C 0.009 3.991 14 C -0.154 4.154 15 C 0.194 3.806 16 O -0.399 6.399 17 C -0.593 4.593 18 H 0.090 0.910 19 C -0.174 4.174 20 N -0.559 5.559 21 Si 0.791 3.209 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.206 1.206 25 C -0.016 4.016 26 N -0.200 5.200 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.233 19.888 2.500 22.069 hybrid contribution 1.528 -2.277 1.203 2.995 sum -7.705 17.611 3.703 19.576 Atomic orbital electron populations 1.21786 0.91617 1.01946 1.04052 1.20239 0.97590 0.96491 0.90637 1.21775 1.00599 0.92842 1.04018 1.24045 0.88375 0.87773 0.94687 1.68337 1.21644 1.31214 0.98414 1.24023 0.87667 0.87084 1.00007 1.23040 1.02641 0.98999 0.90206 1.98433 1.87184 1.77772 1.34599 1.21379 0.95466 0.94892 0.89446 1.17844 0.81374 0.83950 0.82754 1.90824 1.55105 1.58286 1.38377 1.48661 1.48715 1.28749 1.05782 1.22091 0.99603 0.96199 0.81217 1.22738 1.01936 0.93558 0.97187 1.19878 0.83184 0.88810 0.88763 1.86070 1.35973 1.34120 1.83777 1.21859 1.19620 1.02814 1.14975 0.91005 1.25830 0.98406 0.98256 0.94899 1.69684 1.43220 1.18170 1.24782 0.85380 0.78563 0.78316 0.78616 1.18667 1.20853 1.20579 1.23041 0.92834 0.85293 1.00433 1.68622 1.11081 1.08506 1.31829 0.91455 0.89091 0.93830 0.87915 0.93441 0.89139 0.91516 0.75944 0.91135 0.89734 0.89657 0.89181 0.77188 0.91960 0.92794 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.09 71.98 0.65 -1.25 16 2 C -0.03 -0.49 3.25 -11.54 -0.04 -0.53 16 3 C -0.13 -1.76 9.09 71.98 0.65 -1.11 16 4 C 0.32 7.43 6.34 138.79 0.88 8.31 16 5 N -0.48 -10.21 9.78 -187.76 -1.84 -12.04 16 6 C 0.18 3.65 11.14 84.83 0.94 4.59 16 7 C -0.12 -3.21 6.40 22.79 0.15 -3.07 16 8 Cl -0.01 -0.26 26.25 -2.72 -0.07 -0.33 16 9 C 0.14 4.53 6.75 41.98 0.28 4.82 16 10 C 0.55 23.20 7.85 86.94 0.68 23.88 16 11 O -0.55 -25.58 14.40 -3.69 -0.05 -25.63 16 12 N -0.59 -25.18 3.32 -814.14 -2.71 -27.88 16 13 C 0.13 4.72 5.42 86.73 0.47 5.19 16 14 C -0.12 -4.53 6.12 31.78 0.19 -4.34 16 15 C 0.23 11.42 0.89 -10.07 -0.01 11.41 16 16 O -0.59 -31.02 13.19 -148.98 -1.97 -32.99 16 17 C -0.55 -28.67 8.25 25.60 0.21 -28.46 16 18 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 19 C 0.03 1.38 5.30 84.65 0.45 1.83 16 20 N -0.92 -49.89 10.72 21.45 0.23 -49.66 16 21 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.11 5.24 5.65 86.94 0.49 5.73 16 26 N -0.48 -14.17 6.92 -177.05 -1.23 -15.39 16 27 H 0.07 0.94 8.01 -2.39 -0.02 0.93 16 28 H 0.09 0.87 8.14 -2.38 -0.02 0.86 16 29 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 31 H 0.05 0.70 8.14 -2.38 -0.02 0.69 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.89 8.01 -2.39 -0.02 0.87 16 34 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.07 2.51 7.43 -2.39 -0.02 2.50 16 36 H 0.08 2.66 7.56 -2.39 -0.02 2.64 16 37 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 38 H 0.09 3.23 8.01 -2.39 -0.02 3.21 16 39 H 0.38 20.87 6.93 -74.06 -0.51 20.36 16 40 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 41 H 0.05 2.71 8.04 -2.39 -0.02 2.69 16 42 H 0.05 2.66 7.64 -2.39 -0.02 2.64 16 Total: -1.00 -64.08 361.54 0.95 -63.12 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.54 Total: 30.32 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 6.01 Total: 27.00 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.54 Total: -104.98 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -2.02 Total: -58.62 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.07 Total: -0.33 kcal Total: -64.08 0.95 -63.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.901 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds