Wall clock time and date at job start Tue Mar 31 2020 22:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 C 1.50698 * 109.47139 * 119.99775 * 2 1 3 5 5 N 1.31926 * 119.02110 * 300.00197 * 4 2 1 6 6 C 1.32134 * 121.06002 * 180.02562 * 5 4 2 7 7 C 1.38983 * 119.12322 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.88799 * 179.97438 * 7 6 5 9 9 C 1.39634 * 118.22827 * 359.97438 * 7 6 5 10 10 C 1.48376 * 120.56328 * 179.97438 * 9 7 6 11 11 O 1.21485 * 120.00173 * 0.02562 * 10 9 7 12 12 N 1.34781 * 119.99553 * 179.72177 * 10 9 7 13 13 C 1.47426 * 125.65096 * 0.03224 * 12 10 9 14 14 C 1.54906 * 104.82906 * 204.08858 * 13 12 10 15 15 C 1.55161 * 101.58414 * 322.99080 * 14 13 12 16 16 O 1.42908 * 110.71594 * 277.14048 * 15 14 13 17 17 C 1.50699 * 110.72403 * 154.04740 * 15 14 13 18 18 H 1.08001 * 119.99657 * 359.97438 * 17 15 14 19 19 C 1.37867 * 120.00136 * 179.97438 * 17 15 14 20 20 N 1.31520 * 120.00311 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00248 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46837 * 119.99743 * 21 19 17 24 24 H 1.48498 * 109.47401 * 239.99953 * 21 19 17 25 25 C 1.47021 * 125.64443 * 179.71476 * 12 10 9 26 26 N 1.31522 * 119.01730 * 120.27538 * 4 2 1 27 27 H 1.08993 * 109.47055 * 299.99979 * 1 2 3 28 28 H 1.09003 * 109.46974 * 60.00211 * 1 2 3 29 29 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47706 * 239.99935 * 2 1 3 31 31 H 1.09006 * 109.47097 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47234 * 299.99948 * 3 2 1 33 33 H 1.09007 * 109.47248 * 60.00074 * 3 2 1 34 34 H 1.08001 * 120.43955 * 180.02562 * 6 5 4 35 35 H 1.08996 * 110.36304 * 322.92501 * 13 12 10 36 36 H 1.08996 * 110.37020 * 85.24944 * 13 12 10 37 37 H 1.09007 * 111.00635 * 81.06516 * 14 13 12 38 38 H 1.08997 * 111.00312 * 204.87514 * 14 13 12 39 39 H 0.96699 * 113.99440 * 179.97438 * 16 15 14 40 40 H 0.96994 * 120.00197 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.88536 * 298.40124 * 25 12 10 42 42 H 1.09005 * 109.88005 * 59.56785 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7018 -0.2430 2.4191 6 6 2.1202 -0.8338 3.5244 7 6 2.9215 -1.9650 3.4250 8 17 3.4974 -2.7770 4.8473 9 6 3.2510 -2.4311 2.1507 10 6 4.1037 -3.6339 1.9844 11 8 4.5211 -4.2225 2.9617 12 7 4.4101 -4.0771 0.7489 13 6 3.9683 -3.4653 -0.5175 14 6 4.0272 -4.6144 -1.5547 15 6 5.2936 -5.3841 -1.0953 16 8 6.4747 -4.7708 -1.6162 17 6 5.2186 -6.8306 -1.5112 18 1 4.3577 -7.1926 -2.0535 19 6 6.2490 -7.6919 -1.1993 20 7 7.2977 -7.2510 -0.5392 21 14 6.1558 -9.4852 -1.7141 22 1 4.8826 -9.7263 -2.4397 23 1 7.3005 -9.8047 -2.6045 24 1 6.2103 -10.3499 -0.5082 25 6 5.2457 -5.2469 0.4411 26 7 2.7917 -1.7746 1.0874 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.8433 -0.4428 4.4923 35 1 2.9487 -3.0916 -0.4228 36 1 4.6433 -2.6595 -0.8054 37 1 3.1410 -5.2458 -1.4891 38 1 4.1517 -4.2233 -2.5644 39 1 7.2945 -5.2138 -1.3578 40 1 8.0224 -7.8570 -0.3195 41 1 6.2515 -5.0977 0.8335 42 1 4.8043 -6.1429 0.8777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:04 Heat of formation + Delta-G solvation = -31.110024 kcal Electronic energy + Delta-G solvation = -27780.325747 eV Core-core repulsion = 23786.943000 eV Total energy + Delta-G solvation = -3993.382747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55853 -39.29035 -37.40272 -36.72491 -35.63424 -34.58033 -33.88644 -32.18039 -31.10009 -30.09630 -27.92501 -27.39474 -26.31123 -24.87898 -24.56625 -22.67818 -21.42106 -19.64977 -19.26565 -18.30566 -17.24822 -17.12319 -16.29833 -15.85493 -15.58673 -15.39863 -14.86200 -14.71472 -14.37811 -14.27686 -14.07807 -13.41110 -13.06089 -12.98263 -12.88346 -12.44148 -12.36450 -12.15454 -12.06409 -11.73313 -11.52314 -11.41596 -11.38401 -11.26747 -11.13817 -11.06378 -11.03181 -10.71862 -10.56134 -10.49027 -10.21983 -9.96508 -9.33405 -9.33099 -9.03425 -8.67183 -8.33841 -7.93521 -6.31582 -4.40125 0.24794 0.54830 1.87005 2.87963 3.13468 3.20052 3.27942 3.31351 3.52996 3.63746 3.73937 4.23486 4.30347 4.47069 4.60814 4.74792 4.87344 4.96320 5.17809 5.24653 5.42422 5.52561 5.55267 5.60811 5.70893 5.82419 5.85500 5.93685 5.98839 6.09714 6.11817 6.36399 6.46579 6.53240 6.77081 6.83638 6.91181 7.22262 7.33394 7.66989 7.71534 7.96401 8.06297 8.47757 8.64114 9.29236 9.42314 10.76223 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003611 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.768299 B = 7751.839712 C = 9167.803210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.141 4.141 4 C 0.319 3.681 5 N -0.491 5.491 6 C 0.162 3.838 7 C -0.111 4.111 8 Cl -0.002 7.002 9 C 0.159 3.841 10 C 0.559 3.441 11 O -0.518 6.518 12 N -0.581 5.581 13 C 0.104 3.896 14 C -0.122 4.122 15 C 0.249 3.751 16 O -0.585 6.585 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.100 3.900 26 N -0.471 5.471 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.182 0.818 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.386 0.614 40 H 0.271 0.729 41 H 0.068 0.932 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 15.203 4.325 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.199 4.199 4 C 0.052 3.948 5 N -0.205 5.205 6 C -0.006 4.006 7 C -0.144 4.144 8 Cl 0.028 6.972 9 C 0.010 3.990 10 C 0.343 3.657 11 O -0.394 6.394 12 N -0.312 5.312 13 C -0.019 4.019 14 C -0.160 4.160 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.021 4.021 26 N -0.187 5.187 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.199 0.801 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.830 15.588 4.028 19.979 hybrid contribution 0.887 -1.899 1.071 2.354 sum -10.943 13.689 5.099 18.252 Atomic orbital electron populations 1.21803 0.92810 1.02380 1.02917 1.20043 0.96709 0.95941 0.92070 1.21803 1.01249 0.93953 1.02899 1.23415 0.89448 0.88630 0.93310 1.68179 1.22387 1.31477 0.98448 1.23365 0.89834 0.88892 0.98545 1.22881 1.01922 0.98201 0.91358 1.98437 1.86713 1.77619 1.34473 1.21911 0.94114 0.95199 0.87786 1.17282 0.81727 0.83145 0.83497 1.90858 1.53921 1.56932 1.37646 1.48671 1.48302 1.29545 1.04649 1.22634 1.00460 0.95995 0.82764 1.22828 0.98793 0.96243 0.98110 1.19497 0.82789 0.90903 0.86006 1.86087 1.17858 1.58465 1.77137 1.21574 1.05376 0.93258 1.37227 0.91377 1.25079 0.94972 0.99592 0.93618 1.69579 1.08289 1.36463 1.39245 0.86341 0.78298 0.83799 0.78437 1.19557 1.20705 1.20748 1.23195 0.93566 0.84872 1.00445 1.68747 1.10327 1.07655 1.31955 0.91488 0.91349 0.92582 0.87956 0.92562 0.91344 0.91503 0.80067 0.89348 0.91745 0.90716 0.90456 0.76234 0.91929 0.91374 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.09 37.16 0.34 -0.79 16 2 C -0.03 -0.26 3.25 -91.77 -0.30 -0.56 16 3 C -0.14 -1.15 9.09 37.16 0.34 -0.81 16 4 C 0.32 3.98 6.34 -157.32 -1.00 2.98 16 5 N -0.49 -5.75 9.78 -10.70 -0.10 -5.85 16 6 C 0.16 1.81 11.14 -17.15 -0.19 1.62 16 7 C -0.11 -1.57 6.40 -38.78 -0.25 -1.81 16 8 Cl 0.00 -0.02 26.25 -51.86 -1.36 -1.38 16 9 C 0.16 2.63 6.75 -82.61 -0.56 2.07 16 10 C 0.56 11.29 7.85 -12.08 -0.09 11.20 16 11 O -0.52 -11.51 14.47 5.38 0.08 -11.43 16 12 N -0.58 -12.14 3.33 -171.44 -0.57 -12.71 16 13 C 0.10 1.91 5.95 -2.53 -0.02 1.90 16 14 C -0.12 -2.44 6.23 -24.58 -0.15 -2.59 16 15 C 0.25 5.97 0.86 -89.93 -0.08 5.90 16 16 O -0.59 -14.73 13.07 -35.23 -0.46 -15.19 16 17 C -0.54 -13.87 8.12 -34.44 -0.28 -14.15 16 18 H 0.07 1.74 7.76 -52.49 -0.41 1.33 16 19 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 20 N -0.90 -23.62 10.97 55.43 0.61 -23.01 16 21 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.10 2.40 5.54 -3.06 -0.02 2.38 16 26 N -0.47 -7.02 6.66 -7.31 -0.05 -7.07 16 27 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.55 8.01 -51.93 -0.42 0.14 16 34 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.09 1.45 5.94 -51.93 -0.31 1.14 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.39 10.01 6.98 45.56 0.32 10.32 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.07 1.77 8.07 -51.93 -0.42 1.35 16 42 H 0.07 1.80 7.82 -51.93 -0.41 1.40 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -28.82 361.19 -8.77 -37.59 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.99 Total: 9.31 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.35 Total: 9.06 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.12 Total: -48.65 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.38 Total: -26.63 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.36 Total: -1.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.82 -8.77 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.477 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds