Wall clock time and date at job start Tue Mar 31 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48500 * 109.47296 * 240.00142 * 3 2 1 5 5 H 1.48498 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47085 * 120.00278 * 3 2 1 7 7 C 1.37885 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99783 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.88974 * 62.42483 * 9 7 2 11 11 C 1.55159 * 111.00134 * 298.54423 * 9 7 2 12 12 C 1.54324 * 102.94134 * 206.42598 * 11 9 7 13 13 N 1.47020 * 107.39983 * 22.11770 * 12 11 9 14 14 S 1.65607 * 125.64915 * 181.10210 * 13 12 11 15 15 O 1.42095 * 104.27758 * 206.09623 * 14 13 12 16 16 O 1.42104 * 104.27244 * 333.95537 * 14 13 12 17 17 C 1.81398 * 104.44868 * 90.02229 * 14 13 12 18 18 C 1.53001 * 109.47395 * 180.02562 * 17 14 13 19 19 H 1.08996 * 110.43170 * 305.70416 * 18 17 14 20 20 C 1.54268 * 110.49024 * 183.16137 * 18 17 14 21 21 C 1.53875 * 106.59726 * 217.71370 * 20 18 17 22 22 C 1.54262 * 106.60033 * 0.02562 * 21 20 18 23 23 F 1.39897 * 110.48813 * 142.29267 * 22 21 20 24 24 F 1.39904 * 110.48383 * 264.80201 * 22 21 20 25 25 C 1.54892 * 110.48333 * 68.24299 * 18 17 14 26 26 C 1.47743 * 108.53125 * 1.18235 * 13 12 11 27 27 H 0.97008 * 120.00153 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00133 * 297.57782 * 10 9 7 29 29 H 1.09004 * 110.72010 * 88.06387 * 11 9 7 30 30 H 1.08995 * 110.87585 * 324.86236 * 11 9 7 31 31 H 1.09002 * 109.88322 * 141.61300 * 12 11 9 32 32 H 1.09000 * 109.88025 * 262.62465 * 12 11 9 33 33 H 1.08999 * 109.47318 * 300.00373 * 17 14 13 34 34 H 1.09000 * 109.47370 * 60.00371 * 17 14 13 35 35 H 1.09001 * 110.03115 * 336.99546 * 20 18 17 36 36 H 1.08997 * 110.02840 * 98.37966 * 20 18 17 37 37 H 1.08997 * 110.02973 * 119.28524 * 21 20 18 38 38 H 1.09003 * 110.02762 * 240.66608 * 21 20 18 39 39 H 1.09002 * 110.75842 * 274.93816 * 25 18 17 40 40 H 1.08996 * 110.75487 * 38.30942 * 25 18 17 41 41 H 1.09003 * 110.29227 * 216.94505 * 26 13 12 42 42 H 1.09001 * 110.43832 * 94.62768 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4605 -2.6312 -1.1836 11 6 0.3739 -2.6349 1.2722 12 6 0.2587 -4.1634 1.4512 13 7 1.3922 -4.7757 0.7427 14 16 1.6917 -6.4000 0.6228 15 8 3.0978 -6.4842 0.4358 16 8 1.0709 -6.9567 1.7735 17 6 0.8177 -6.9115 -0.8822 18 6 1.0199 -8.4117 -1.1046 19 1 2.0823 -8.6551 -1.1144 20 6 0.3517 -8.8573 -2.4217 21 6 -0.2510 -10.2487 -2.1601 22 6 0.0714 -10.5998 -0.6930 23 9 -1.0016 -11.2779 -0.1047 24 9 1.2363 -11.3710 -0.6187 25 6 0.2873 -9.2256 -0.0092 26 6 2.2180 -3.6987 0.1589 27 1 -0.4851 0.8401 0.0004 28 1 -0.2255 -1.9558 -1.2757 29 1 -0.6084 -2.1902 1.1129 30 1 0.8658 -2.1819 2.1329 31 1 0.3028 -4.4171 2.5104 32 1 -0.6799 -4.5169 1.0243 33 1 -0.2463 -6.7008 -0.7739 34 1 1.2120 -6.3609 -1.7363 35 1 -0.4353 -8.1553 -2.6973 36 1 1.0953 -8.9150 -3.2166 37 1 -1.3305 -10.2219 -2.3087 38 1 0.1996 -10.9824 -2.8285 39 1 0.9112 -9.3272 0.8789 40 1 -0.6687 -8.7652 0.2398 41 1 2.6063 -4.0046 -0.8126 42 1 3.0362 -3.4397 0.8309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601452284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:00 Heat of formation + Delta-G solvation = -251.248750 kcal Electronic energy + Delta-G solvation = -28786.690078 eV Core-core repulsion = 24335.115919 eV Total energy + Delta-G solvation = -4451.574159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.94224 -48.08567 -39.70784 -38.96838 -38.21683 -37.05948 -35.96656 -34.13710 -32.36527 -30.88607 -29.94572 -29.72230 -26.77464 -26.45383 -23.09377 -22.23765 -21.63329 -21.46661 -19.96885 -19.17645 -18.67006 -18.56753 -17.75539 -17.66668 -17.14812 -16.89729 -16.78168 -16.20268 -15.92794 -15.73675 -15.21385 -15.09103 -14.79958 -14.54195 -14.43331 -14.33518 -14.06873 -14.01883 -13.63438 -13.39749 -13.31536 -13.18602 -13.16942 -13.10893 -12.86305 -12.79459 -12.74446 -12.55003 -12.39871 -12.28851 -12.13874 -11.80851 -11.69948 -11.64045 -11.50577 -11.14952 -10.58733 -10.06947 -9.81416 -8.19203 -6.32764 -0.79864 1.45838 1.47835 1.53700 1.61581 2.42479 2.61150 2.79638 2.80239 2.99851 3.05170 3.09464 3.25050 3.65739 3.76428 3.82952 3.91279 4.14297 4.15622 4.24005 4.29336 4.34016 4.38799 4.42967 4.56294 4.61276 4.68045 4.75307 4.87112 4.89873 4.97775 5.12316 5.18835 5.22494 5.29316 5.42897 5.54972 5.62498 5.83659 6.16463 6.71141 7.37708 7.46868 8.85916 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.002835 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.979992 B = 9872.671902 C =10039.604524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.038 3.962 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.056 0.944 9 C 0.238 3.762 10 O -0.584 6.584 11 C -0.126 4.126 12 C 0.124 3.876 13 N -1.012 6.012 14 S 2.617 3.383 15 O -0.991 6.991 16 O -0.978 6.978 17 C -0.598 4.598 18 C -0.088 4.088 19 H 0.097 0.903 20 C -0.104 4.104 21 C -0.154 4.154 22 C 0.272 3.728 23 F -0.205 7.205 24 F -0.206 7.206 25 C -0.186 4.186 26 C 0.140 3.860 27 H 0.269 0.731 28 H 0.377 0.623 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.072 0.928 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 -16.009 -5.202 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.601 4.601 8 H 0.074 0.926 9 C 0.197 3.803 10 O -0.392 6.392 11 C -0.166 4.166 12 C -0.001 4.001 13 N -0.850 5.850 14 S 2.717 3.283 15 O -0.982 6.982 16 O -0.969 6.969 17 C -0.730 4.730 18 C -0.108 4.108 19 H 0.116 0.884 20 C -0.143 4.143 21 C -0.192 4.192 22 C 0.236 3.764 23 F -0.186 7.186 24 F -0.187 7.187 25 C -0.224 4.224 26 C 0.015 3.985 27 H 0.079 0.921 28 H 0.226 0.774 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.137 -17.034 -4.627 17.928 hybrid contribution -0.147 1.595 0.097 1.604 sum -3.284 -15.440 -4.530 16.422 Atomic orbital electron populations 1.69764 1.06502 1.28209 1.49951 1.25550 0.95793 1.01776 0.93264 0.85682 0.78513 0.79244 0.78549 1.20098 1.20751 1.20134 1.21740 0.93715 0.91922 1.52769 0.92594 1.19724 0.87531 0.90726 0.82361 1.86050 1.51437 1.56713 1.45007 1.22971 1.01667 0.92364 0.99618 1.21784 0.88026 0.94518 0.95819 1.58499 1.37138 1.22131 1.67195 1.04640 0.74572 0.71422 0.77714 1.93534 1.30991 1.85597 1.88056 1.93536 1.78646 1.77217 1.47473 1.30518 1.16833 1.04506 1.21177 1.21784 1.01868 0.89846 0.97341 0.88430 1.22191 1.01598 0.95088 0.95408 1.23190 1.05493 0.99629 0.90903 1.22226 0.72144 0.85396 0.96676 1.92989 1.56423 1.82751 1.86473 1.92995 1.50170 1.78148 1.97418 1.23982 1.05416 0.93747 0.99222 1.21987 0.92991 0.86456 0.97051 0.92133 0.77375 0.90758 0.93003 0.91808 0.90567 0.82079 0.82382 0.87991 0.88327 0.86544 0.87514 0.89461 0.85828 0.90972 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.65 10.76 21.45 0.23 -44.42 16 2 C 0.04 1.86 5.29 84.66 0.45 2.31 16 3 Si 0.95 40.08 29.54 68.60 2.03 42.11 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.56 -28.25 8.27 25.60 0.21 -28.04 16 8 H 0.06 2.82 7.79 -2.91 -0.02 2.80 16 9 C 0.24 10.69 0.87 -10.15 -0.01 10.68 16 10 O -0.58 -26.24 13.16 -148.98 -1.96 -28.20 16 11 C -0.13 -5.26 5.38 31.78 0.17 -5.09 16 12 C 0.12 4.27 6.89 86.73 0.60 4.87 16 13 N -1.01 -35.19 3.63 -505.66 -1.84 -37.03 16 14 S 2.62 79.15 5.47 -56.49 -0.31 78.84 16 15 O -0.99 -36.26 17.62 -127.65 -2.25 -38.51 16 16 O -0.98 -32.80 16.30 -127.65 -2.08 -34.88 16 17 C -0.60 -11.66 5.50 71.98 0.40 -11.27 16 18 C -0.09 -1.55 2.87 -9.72 -0.03 -1.58 16 19 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.10 -1.20 6.38 31.32 0.20 -1.00 16 21 C -0.15 -1.83 6.42 31.32 0.20 -1.63 16 22 C 0.27 5.16 2.49 31.71 0.08 5.23 16 23 F -0.21 -4.47 17.17 44.97 0.77 -3.69 16 24 F -0.21 -4.67 17.17 44.97 0.77 -3.90 16 25 C -0.19 -3.66 4.93 31.93 0.16 -3.50 16 26 C 0.14 5.64 6.09 86.79 0.53 6.17 16 27 H 0.27 12.78 8.31 -92.70 -0.77 12.01 16 28 H 0.38 17.40 7.56 -74.06 -0.56 16.84 16 29 H 0.07 3.21 7.55 -2.38 -0.02 3.19 16 30 H 0.05 2.27 8.04 -2.39 -0.02 2.25 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.16 2.46 8.06 -2.39 -0.02 2.44 16 34 H 0.16 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.10 0.91 7.84 -2.39 -0.02 0.89 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 1.02 8.11 -2.39 -0.02 1.00 16 38 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 39 H 0.09 1.99 7.60 -2.39 -0.02 1.97 16 40 H 0.12 2.12 7.99 -2.39 -0.02 2.10 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 Total: -1.00 -62.32 357.34 -1.20 -63.52 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.48 Total: 29.01 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 2.95 Total: -22.86 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.61 Total: -81.44 kcal Atomic # 8 Polarization: -95.30 SS G_CDS: -6.29 Total: -101.59 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 1.54 Total: -7.59 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 79.15 SS G_CDS: -0.31 Total: 78.84 kcal Total: -62.32 -1.20 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.732 kcal (2) G-P(sol) polarization free energy of solvation -62.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds