Wall clock time and date at job start Tue Mar 31 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48502 * 109.46858 * 264.97270 * 3 2 1 5 5 H 1.48507 * 109.47060 * 144.98016 * 3 2 1 6 6 H 1.48495 * 109.47240 * 24.97756 * 3 2 1 7 7 C 1.37871 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00441 * 185.66019 * 7 2 1 9 9 C 1.50701 * 119.99853 * 5.66072 * 7 2 1 10 10 O 1.42901 * 110.88850 * 295.21108 * 9 7 2 11 11 C 1.55154 * 111.00466 * 59.09631 * 9 7 2 12 12 C 1.54323 * 102.94303 * 153.57634 * 11 9 7 13 13 N 1.47025 * 107.27454 * 337.80645 * 12 11 9 14 14 S 1.65594 * 125.65326 * 178.98732 * 13 12 11 15 15 O 1.42097 * 104.27980 * 206.04435 * 14 13 12 16 16 O 1.42103 * 104.27514 * 333.90535 * 14 13 12 17 17 C 1.81400 * 104.44895 * 89.97252 * 14 13 12 18 18 C 1.53003 * 109.47059 * 180.02562 * 17 14 13 19 19 H 1.09001 * 110.43191 * 305.69827 * 18 17 14 20 20 C 1.54891 * 110.48573 * 68.24234 * 18 17 14 21 21 C 1.55031 * 102.67940 * 156.51957 * 20 18 17 22 22 C 1.54267 * 104.28271 * 322.22832 * 21 20 18 23 23 F 1.39897 * 110.03570 * 264.23916 * 22 21 20 24 24 F 1.39897 * 110.07221 * 142.82561 * 22 21 20 25 25 C 1.53880 * 106.59663 * 23.52390 * 22 21 20 26 26 C 1.47423 * 108.69631 * 358.93844 * 13 12 11 27 27 H 0.96996 * 120.00533 * 0.02562 * 1 2 3 28 28 H 0.96701 * 113.99489 * 59.29954 * 10 9 7 29 29 H 1.09004 * 110.71886 * 271.93922 * 11 9 7 30 30 H 1.08993 * 110.72502 * 35.21241 * 11 9 7 31 31 H 1.09008 * 109.88411 * 97.22028 * 12 11 9 32 32 H 1.08997 * 109.88399 * 218.23287 * 12 11 9 33 33 H 1.09003 * 109.47257 * 300.00294 * 17 14 13 34 34 H 1.08999 * 109.47412 * 60.00017 * 17 14 13 35 35 H 1.09001 * 110.75483 * 274.93401 * 20 18 17 36 36 H 1.08999 * 110.75863 * 38.30750 * 20 18 17 37 37 H 1.09005 * 110.52012 * 203.48998 * 21 20 18 38 38 H 1.08995 * 110.48458 * 80.95291 * 21 20 18 39 39 H 1.09004 * 110.03276 * 240.71511 * 25 22 21 40 40 H 1.08994 * 110.07349 * 119.30500 * 25 22 21 41 41 H 1.08997 * 110.37139 * 265.28854 * 26 13 12 42 42 H 1.09007 * 110.36579 * 142.96948 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6028 1.9851 -1.3947 5 1 3.4896 1.4732 0.8035 6 1 1.3975 2.6810 0.5912 7 6 2.0045 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0928 9 6 1.2565 -2.4960 -0.1276 10 8 0.4092 -2.7102 1.0029 11 6 0.4440 -2.5429 -1.4485 12 6 0.3432 -4.0552 -1.7389 13 7 1.4446 -4.7121 -1.0198 14 16 1.7482 -6.3399 -0.9984 15 8 2.4370 -6.5519 0.2262 16 8 0.4808 -6.9359 -1.2389 17 6 2.8573 -6.6120 -2.4078 18 6 3.2145 -8.0971 -2.4964 19 1 3.6219 -8.4477 -1.5482 20 6 1.9711 -8.9309 -2.8938 21 6 2.5998 -10.2041 -3.5160 22 6 3.8293 -9.6829 -4.2884 23 9 3.5019 -9.4866 -5.6342 24 9 4.8856 -10.5937 -4.1804 25 6 4.2202 -8.3432 -3.6401 26 6 2.2346 -3.6815 -0.3220 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2526 -2.0176 1.1352 29 1 -0.5466 -2.1104 -1.3075 30 1 0.9788 -2.0314 -2.2487 31 1 -0.6130 -4.4383 -1.3821 32 1 0.4378 -4.2342 -2.8099 33 1 2.3594 -6.3029 -3.3270 34 1 3.7668 -6.0266 -2.2729 35 1 1.3767 -9.1809 -2.0149 36 1 1.3687 -8.3993 -3.6304 37 1 1.8967 -10.6838 -4.1970 38 1 2.9068 -10.8989 -2.7343 39 1 4.1547 -7.5401 -4.3741 40 1 5.2326 -8.4022 -3.2408 41 1 3.0840 -3.3762 -0.9330 42 1 2.5756 -4.0542 0.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601452288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:06 Heat of formation + Delta-G solvation = -230.696175 kcal Electronic energy + Delta-G solvation = -28574.962711 eV Core-core repulsion = 24124.279779 eV Total energy + Delta-G solvation = -4450.682932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.21945 -47.28855 -38.29846 -38.05552 -36.88973 -35.71857 -34.27195 -32.23471 -31.55813 -29.27710 -29.12821 -28.30307 -25.74201 -24.85476 -21.62755 -21.55682 -20.83508 -19.87106 -18.66591 -18.01746 -17.52409 -17.15446 -17.04679 -16.56991 -15.89104 -15.72302 -14.98844 -14.78911 -14.67025 -14.55917 -14.31191 -14.13774 -13.81749 -13.61987 -13.37392 -13.06800 -12.85842 -12.56179 -12.45409 -12.19520 -12.06803 -11.96497 -11.82983 -11.82462 -11.68772 -11.50972 -11.38206 -11.25208 -11.11752 -11.06733 -10.82052 -10.56613 -10.52338 -10.43407 -10.02898 -9.40157 -8.69884 -8.38731 -8.20807 -6.31011 -4.39225 0.37382 2.89642 3.17263 3.25297 3.28151 3.37207 3.49400 3.72299 3.89644 4.05844 4.17945 4.24089 4.46003 4.48999 4.67717 4.76254 4.88501 4.89080 4.96665 5.10625 5.27413 5.34672 5.37958 5.41531 5.58722 5.64176 5.74097 5.76924 5.90887 5.95451 6.21433 6.37400 6.57109 6.74858 6.90225 7.00050 7.32024 7.36331 7.71222 8.00898 8.63434 9.28925 9.43424 10.76371 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.002772 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.733930 B =10098.339553 C =10519.209745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.253 3.747 10 O -0.583 6.583 11 C -0.133 4.133 12 C 0.122 3.878 13 N -1.005 6.005 14 S 2.625 3.375 15 O -0.953 6.953 16 O -0.954 6.954 17 C -0.636 4.636 18 C -0.079 4.079 19 H 0.100 0.900 20 C -0.140 4.140 21 C -0.159 4.159 22 C 0.280 3.720 23 F -0.197 7.197 24 F -0.200 7.200 25 C -0.153 4.153 26 C 0.128 3.872 27 H 0.268 0.732 28 H 0.382 0.618 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -14.862 -8.915 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.211 3.789 10 O -0.392 6.392 11 C -0.173 4.173 12 C -0.003 4.003 13 N -0.844 5.844 14 S 2.718 3.282 15 O -0.944 6.944 16 O -0.945 6.945 17 C -0.763 4.763 18 C -0.099 4.099 19 H 0.118 0.882 20 C -0.177 4.177 21 C -0.197 4.197 22 C 0.244 3.756 23 F -0.178 7.178 24 F -0.181 7.181 25 C -0.192 4.192 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.232 0.768 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.830 -16.018 -8.284 18.669 hybrid contribution 0.651 1.709 -1.017 2.093 sum 5.481 -14.309 -9.301 17.925 Atomic orbital electron populations 1.69705 1.05992 1.27722 1.49708 1.24994 0.94980 0.99495 0.93518 0.86454 0.79834 0.82457 0.78339 1.20431 1.19750 1.21117 1.21464 0.94129 0.90334 1.51845 0.91703 1.19580 0.86405 0.90103 0.82814 1.86134 1.50985 1.52363 1.49670 1.23157 1.03074 0.90478 1.00603 1.21817 0.88810 0.96098 0.93613 1.58412 1.39547 1.23381 1.63051 1.04530 0.75328 0.72359 0.76014 1.93583 1.76753 1.84365 1.39653 1.93563 1.38297 1.75819 1.86773 1.30890 1.18606 1.03216 1.23573 1.21661 0.96420 0.91732 1.00123 0.88164 1.22949 0.96737 0.94927 1.03094 1.23378 0.95651 0.99594 1.01111 1.21840 0.85679 0.89282 0.78836 1.93023 1.92831 1.95584 1.36406 1.93017 1.59593 1.69489 1.95958 1.23213 1.01515 0.95394 0.99037 1.22209 0.93951 0.87830 0.95673 0.92156 0.76831 0.89709 0.91539 0.91938 0.93457 0.84717 0.84520 0.88502 0.89017 0.88359 0.87975 0.87987 0.88094 0.91340 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.47 10.77 55.43 0.60 -21.87 16 2 C 0.07 1.82 5.25 -17.82 -0.09 1.73 16 3 Si 0.90 19.54 29.54 -169.99 -5.02 14.52 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -13.48 8.27 -34.44 -0.28 -13.77 16 8 H 0.06 1.59 7.80 -52.48 -0.41 1.19 16 9 C 0.25 5.89 0.88 -89.62 -0.08 5.81 16 10 O -0.58 -14.70 13.18 -35.23 -0.46 -15.17 16 11 C -0.13 -2.79 5.37 -24.90 -0.13 -2.92 16 12 C 0.12 2.17 6.90 -3.06 -0.02 2.15 16 13 N -1.00 -17.84 3.62 -111.41 -0.40 -18.24 16 14 S 2.62 40.06 5.46 -107.50 -0.59 39.47 16 15 O -0.95 -17.53 17.28 -57.54 -0.99 -18.52 16 16 O -0.95 -16.19 16.30 -57.54 -0.94 -17.13 16 17 C -0.64 -6.42 5.50 37.16 0.20 -6.22 16 18 C -0.08 -0.73 2.87 -88.96 -0.25 -0.98 16 19 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 20 C -0.14 -1.26 5.35 -24.66 -0.13 -1.39 16 21 C -0.16 -1.24 6.40 -25.00 -0.16 -1.40 16 22 C 0.28 2.59 2.57 -25.61 -0.07 2.53 16 23 F -0.20 -2.12 17.04 2.25 0.04 -2.08 16 24 F -0.20 -2.08 17.04 2.25 0.04 -2.04 16 25 C -0.15 -1.26 6.07 -25.61 -0.16 -1.42 16 26 C 0.13 2.57 6.25 -2.53 -0.02 2.56 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.38 9.63 7.50 45.56 0.34 9.97 16 29 H 0.08 1.88 7.57 -51.93 -0.39 1.49 16 30 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 31 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.13 1.14 8.06 -51.92 -0.42 0.72 16 34 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.10 0.89 7.60 -51.93 -0.39 0.50 16 36 H 0.09 0.80 8.00 -51.93 -0.42 0.38 16 37 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.10 0.78 7.71 -51.93 -0.40 0.38 16 40 H 0.10 0.73 8.02 -51.93 -0.42 0.31 16 41 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 42 H 0.08 1.61 7.67 -51.92 -0.40 1.21 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -30.23 356.34 -8.96 -39.19 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.41 Total: 9.83 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.19 Total: -13.33 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.19 Total: -40.11 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -2.40 Total: -50.82 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 40.06 SS G_CDS: -0.59 Total: 39.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.23 -8.96 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.501 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds