Wall clock time and date at job start Tue Mar 31 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48502 * 109.46858 * 264.97270 * 3 2 1 5 5 H 1.48507 * 109.47060 * 144.98016 * 3 2 1 6 6 H 1.48495 * 109.47240 * 24.97756 * 3 2 1 7 7 C 1.37871 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00441 * 185.66019 * 7 2 1 9 9 C 1.50701 * 119.99853 * 5.66072 * 7 2 1 10 10 O 1.42901 * 110.88850 * 295.21108 * 9 7 2 11 11 C 1.55154 * 111.00466 * 59.09631 * 9 7 2 12 12 C 1.54323 * 102.94303 * 153.57634 * 11 9 7 13 13 N 1.47025 * 107.27454 * 337.80645 * 12 11 9 14 14 S 1.65594 * 125.65326 * 178.98732 * 13 12 11 15 15 O 1.42097 * 104.27980 * 206.04435 * 14 13 12 16 16 O 1.42103 * 104.27514 * 333.90535 * 14 13 12 17 17 C 1.81400 * 104.44895 * 89.97252 * 14 13 12 18 18 C 1.53003 * 109.47059 * 180.02562 * 17 14 13 19 19 H 1.09001 * 110.43191 * 305.69827 * 18 17 14 20 20 C 1.54891 * 110.48573 * 68.24234 * 18 17 14 21 21 C 1.55031 * 102.67940 * 156.51957 * 20 18 17 22 22 C 1.54267 * 104.28271 * 322.22832 * 21 20 18 23 23 F 1.39897 * 110.03570 * 264.23916 * 22 21 20 24 24 F 1.39897 * 110.07221 * 142.82561 * 22 21 20 25 25 C 1.53880 * 106.59663 * 23.52390 * 22 21 20 26 26 C 1.47423 * 108.69631 * 358.93844 * 13 12 11 27 27 H 0.96996 * 120.00533 * 0.02562 * 1 2 3 28 28 H 0.96701 * 113.99489 * 59.29954 * 10 9 7 29 29 H 1.09004 * 110.71886 * 271.93922 * 11 9 7 30 30 H 1.08993 * 110.72502 * 35.21241 * 11 9 7 31 31 H 1.09008 * 109.88411 * 97.22028 * 12 11 9 32 32 H 1.08997 * 109.88399 * 218.23287 * 12 11 9 33 33 H 1.09003 * 109.47257 * 300.00294 * 17 14 13 34 34 H 1.08999 * 109.47412 * 60.00017 * 17 14 13 35 35 H 1.09001 * 110.75483 * 274.93401 * 20 18 17 36 36 H 1.08999 * 110.75863 * 38.30750 * 20 18 17 37 37 H 1.09005 * 110.52012 * 203.48998 * 21 20 18 38 38 H 1.08995 * 110.48458 * 80.95291 * 21 20 18 39 39 H 1.09004 * 110.03276 * 240.71511 * 25 22 21 40 40 H 1.08994 * 110.07349 * 119.30500 * 25 22 21 41 41 H 1.08997 * 110.37139 * 265.28854 * 26 13 12 42 42 H 1.09007 * 110.36579 * 142.96948 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6028 1.9851 -1.3947 5 1 3.4896 1.4732 0.8035 6 1 1.3975 2.6810 0.5912 7 6 2.0045 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0928 9 6 1.2565 -2.4960 -0.1276 10 8 0.4092 -2.7102 1.0029 11 6 0.4440 -2.5429 -1.4485 12 6 0.3432 -4.0552 -1.7389 13 7 1.4446 -4.7121 -1.0198 14 16 1.7482 -6.3399 -0.9984 15 8 2.4370 -6.5519 0.2262 16 8 0.4808 -6.9359 -1.2389 17 6 2.8573 -6.6120 -2.4078 18 6 3.2145 -8.0971 -2.4964 19 1 3.6219 -8.4477 -1.5482 20 6 1.9711 -8.9309 -2.8938 21 6 2.5998 -10.2041 -3.5160 22 6 3.8293 -9.6829 -4.2884 23 9 3.5019 -9.4866 -5.6342 24 9 4.8856 -10.5937 -4.1804 25 6 4.2202 -8.3432 -3.6401 26 6 2.2346 -3.6815 -0.3220 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2526 -2.0176 1.1352 29 1 -0.5466 -2.1104 -1.3075 30 1 0.9788 -2.0314 -2.2487 31 1 -0.6130 -4.4383 -1.3821 32 1 0.4378 -4.2342 -2.8099 33 1 2.3594 -6.3029 -3.3270 34 1 3.7668 -6.0266 -2.2729 35 1 1.3767 -9.1809 -2.0149 36 1 1.3687 -8.3993 -3.6304 37 1 1.8967 -10.6838 -4.1970 38 1 2.9068 -10.8989 -2.7343 39 1 4.1547 -7.5401 -4.3741 40 1 5.2326 -8.4022 -3.2408 41 1 3.0840 -3.3762 -0.9330 42 1 2.5756 -4.0542 0.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601452288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:05 Heat of formation + Delta-G solvation = -252.421358 kcal Electronic energy + Delta-G solvation = -28575.904786 eV Core-core repulsion = 24124.279779 eV Total energy + Delta-G solvation = -4451.625007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.94848 -48.03115 -39.70030 -38.97425 -38.17306 -37.00037 -36.00007 -34.16169 -32.31431 -30.88275 -29.92864 -29.77821 -26.78325 -26.37303 -23.06327 -22.23423 -21.62621 -21.55740 -19.91645 -19.13235 -18.82239 -18.49037 -17.88657 -17.57489 -17.03521 -16.84612 -16.72559 -16.19418 -15.79326 -15.53175 -15.26276 -15.21903 -14.98056 -14.57276 -14.41643 -14.36820 -14.08897 -13.70414 -13.62438 -13.39560 -13.33833 -13.23140 -13.15189 -13.08691 -12.80163 -12.76819 -12.58197 -12.51638 -12.28221 -12.23539 -12.10863 -11.95677 -11.83228 -11.76343 -11.42238 -11.15669 -10.56702 -10.07637 -9.78135 -8.18818 -6.33722 -0.79002 1.45768 1.48840 1.56572 1.65565 2.42833 2.66979 2.82465 2.95796 3.02080 3.06593 3.11093 3.29437 3.66163 3.71504 3.80911 3.95988 4.11076 4.15824 4.19274 4.26453 4.34180 4.40147 4.46336 4.63404 4.70240 4.72039 4.77425 4.82352 4.96346 4.97902 4.99741 5.10976 5.27147 5.29247 5.46287 5.54581 5.63066 5.84265 6.16493 6.72242 7.36665 7.48001 8.86945 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.002772 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.733930 B =10098.339553 C =10519.209745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.033 3.967 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.559 4.559 8 H 0.063 0.937 9 C 0.227 3.773 10 O -0.598 6.598 11 C -0.125 4.125 12 C 0.124 3.876 13 N -1.013 6.013 14 S 2.619 3.381 15 O -0.993 6.993 16 O -0.978 6.978 17 C -0.600 4.600 18 C -0.086 4.086 19 H 0.106 0.894 20 C -0.147 4.147 21 C -0.156 4.156 22 C 0.273 3.727 23 F -0.207 7.207 24 F -0.208 7.208 25 C -0.147 4.147 26 C 0.133 3.867 27 H 0.269 0.731 28 H 0.375 0.625 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 -15.369 -10.923 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.597 4.597 8 H 0.081 0.919 9 C 0.186 3.814 10 O -0.407 6.407 11 C -0.165 4.165 12 C -0.001 4.001 13 N -0.850 5.850 14 S 2.719 3.281 15 O -0.984 6.984 16 O -0.969 6.969 17 C -0.733 4.733 18 C -0.107 4.107 19 H 0.124 0.876 20 C -0.185 4.185 21 C -0.194 4.194 22 C 0.237 3.763 23 F -0.188 7.188 24 F -0.189 7.189 25 C -0.186 4.186 26 C 0.008 3.992 27 H 0.078 0.922 28 H 0.225 0.775 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.289 -16.516 -10.247 20.429 hybrid contribution 0.202 1.776 -0.409 1.834 sum 6.491 -14.740 -10.656 19.312 Atomic orbital electron populations 1.69800 1.06903 1.28224 1.49942 1.25657 0.95709 1.02165 0.93265 0.85550 0.78466 0.78949 0.78474 1.19583 1.19856 1.21325 1.21749 0.94260 0.91534 1.52187 0.91901 1.19961 0.87145 0.91129 0.83126 1.86133 1.51183 1.52227 1.51127 1.22950 1.01339 0.92814 0.99387 1.21772 0.88547 0.93710 0.96040 1.58380 1.39594 1.23614 1.63432 1.04567 0.75519 0.71131 0.76917 1.93533 1.77145 1.84387 1.43362 1.93530 1.40489 1.75563 1.87318 1.30568 1.17699 1.04661 1.20389 1.21791 0.96972 0.90765 1.01128 0.87552 1.23019 0.96779 0.95634 1.03062 1.23392 0.95243 0.99349 1.01402 1.22078 0.85932 0.89803 0.78495 1.93006 1.92906 1.95648 1.37255 1.93002 1.60049 1.69887 1.95964 1.23194 1.01683 0.95099 0.98637 1.22048 0.94065 0.87308 0.95773 0.92189 0.77549 0.91922 0.91274 0.93225 0.89133 0.81885 0.81953 0.89220 0.88600 0.87512 0.86882 0.86808 0.86786 0.88774 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.38 10.77 21.44 0.23 -46.15 16 2 C 0.03 1.66 5.25 84.65 0.44 2.10 16 3 Si 0.96 39.87 29.54 68.60 2.03 41.89 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.56 -28.05 8.27 25.60 0.21 -27.84 16 8 H 0.06 3.09 7.80 -2.91 -0.02 3.06 16 9 C 0.23 10.70 0.88 -10.15 -0.01 10.69 16 10 O -0.60 -31.23 13.18 -148.98 -1.96 -33.19 16 11 C -0.13 -5.21 5.37 31.78 0.17 -5.04 16 12 C 0.12 4.27 6.90 86.73 0.60 4.87 16 13 N -1.01 -34.73 3.62 -506.40 -1.83 -36.56 16 14 S 2.62 76.19 5.46 -56.49 -0.31 75.89 16 15 O -0.99 -36.32 17.28 -127.65 -2.21 -38.53 16 16 O -0.98 -32.34 16.30 -127.65 -2.08 -34.42 16 17 C -0.60 -9.76 5.50 71.98 0.40 -9.36 16 18 C -0.09 -1.29 2.87 -9.72 -0.03 -1.32 16 19 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 20 C -0.15 -2.28 5.35 31.94 0.17 -2.11 16 21 C -0.16 -2.05 6.40 31.72 0.20 -1.85 16 22 C 0.27 4.30 2.57 31.32 0.08 4.38 16 23 F -0.21 -3.92 17.04 44.97 0.77 -3.15 16 24 F -0.21 -3.86 17.04 44.97 0.77 -3.09 16 25 C -0.15 -1.87 6.07 31.32 0.19 -1.68 16 26 C 0.13 5.30 6.25 86.86 0.54 5.84 16 27 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 28 H 0.38 19.82 7.50 -74.06 -0.56 19.26 16 29 H 0.06 2.84 7.57 -2.38 -0.02 2.83 16 30 H 0.07 2.78 8.03 -2.39 -0.02 2.76 16 31 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.16 1.89 8.06 -2.39 -0.02 1.88 16 34 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.52 7.60 -2.39 -0.02 1.50 16 36 H 0.10 1.39 8.00 -2.39 -0.02 1.37 16 37 H 0.11 1.22 8.11 -2.38 -0.02 1.20 16 38 H 0.11 1.22 8.12 -2.39 -0.02 1.20 16 39 H 0.11 1.22 7.71 -2.39 -0.02 1.20 16 40 H 0.11 1.19 8.02 -2.39 -0.02 1.17 16 41 H 0.09 3.19 8.03 -2.39 -0.02 3.18 16 42 H 0.06 2.45 7.67 -2.38 -0.02 2.43 16 Total: -1.00 -66.51 356.34 -1.14 -67.65 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.49 Total: 31.00 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 2.97 Total: -21.33 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.60 Total: -82.71 kcal Atomic # 8 Polarization: -99.89 SS G_CDS: -6.25 Total: -106.14 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 1.53 Total: -6.25 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 16 Polarization: 76.19 SS G_CDS: -0.31 Total: 75.89 kcal Total: -66.51 -1.14 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.773 kcal (2) G-P(sol) polarization free energy of solvation -66.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds