Wall clock time and date at job start Tue Mar 31 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46977 * 269.99874 * 3 2 1 5 5 H 1.48498 * 109.47007 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99999 * 3 2 1 7 7 C 1.37878 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99596 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.46951 * 111.00407 * 170.00156 * 10 9 7 12 12 C 1.53050 * 109.36489 * 183.18893 * 11 10 9 13 13 N 1.46952 * 109.36501 * 301.59601 * 12 11 10 14 14 C 1.46895 * 111.00421 * 183.18855 * 13 12 11 15 15 C 1.50699 * 109.47517 * 164.69485 * 14 13 12 16 16 C 1.38260 * 119.98473 * 106.91694 * 15 14 13 17 17 C 1.38192 * 120.01480 * 180.02562 * 16 15 14 18 18 C 1.38374 * 119.98680 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 120.01716 * 180.02562 * 18 17 16 20 20 C 1.38336 * 119.97061 * 0.02562 * 18 17 16 21 21 C 1.38216 * 119.98694 * 286.93816 * 15 14 13 22 22 N 1.48022 * 119.99640 * 0.25595 * 21 15 14 23 23 O 1.21801 * 119.99908 * 174.20605 * 22 21 15 24 24 O 1.21799 * 119.99456 * 354.20428 * 22 21 15 25 25 C 1.46958 * 110.88043 * 59.31733 * 13 12 11 26 26 C 1.46961 * 110.99494 * 293.79902 * 10 9 7 27 27 H 0.96997 * 120.00257 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47351 * 60.00509 * 9 7 2 29 29 H 1.09005 * 109.47286 * 300.00406 * 9 7 2 30 30 H 1.09003 * 109.49094 * 63.22038 * 11 10 9 31 31 H 1.09004 * 109.48810 * 303.15793 * 11 10 9 32 32 H 1.09002 * 109.48730 * 181.63103 * 12 11 10 33 33 H 1.08998 * 109.48948 * 61.56412 * 12 11 10 34 34 H 1.09006 * 109.47043 * 44.69800 * 14 13 12 35 35 H 1.08999 * 109.47101 * 284.69785 * 14 13 12 36 36 H 1.08001 * 119.99730 * 0.02562 * 16 15 14 37 37 H 1.07999 * 120.01239 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.00674 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.48625 * 60.64846 * 25 13 12 40 40 H 1.09004 * 109.49091 * 180.70974 * 25 13 12 41 41 H 1.08998 * 109.49166 * 296.77556 * 26 10 9 42 42 H 1.09002 * 109.48929 * 56.84503 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5210 -4.8940 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2741 -7.1757 -0.9461 15 6 4.7600 -7.4212 -2.3513 16 6 6.0446 -7.0582 -2.7115 17 6 6.4907 -7.2825 -4.0000 18 6 5.6516 -7.8710 -4.9298 19 17 6.2114 -8.1537 -6.5485 20 6 4.3665 -8.2339 -4.5687 21 6 3.9213 -8.0086 -3.2796 22 7 2.5441 -8.3914 -2.8948 23 8 1.7709 -8.8110 -3.7372 24 8 2.1843 -8.2867 -1.7359 25 6 4.0041 -4.7809 -1.1843 26 6 2.9686 -3.6562 -1.2559 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 0.8254 -5.0915 -0.5780 31 1 0.9733 -4.8433 1.1788 32 1 2.0485 -6.9718 0.4570 33 1 3.2356 -5.8353 1.1419 34 1 3.7835 -8.0733 -0.5694 35 1 5.1215 -6.9292 -0.3064 36 1 6.6996 -6.5992 -1.9857 37 1 7.4942 -6.9993 -4.2813 38 1 3.7112 -8.6937 -5.2938 39 1 4.6997 -4.5834 -0.3686 40 1 4.5518 -4.8315 -2.1254 41 1 2.2895 -3.8396 -2.0885 42 1 3.4765 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611173789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:48 Heat of formation + Delta-G solvation = 40.081631 kcal Electronic energy + Delta-G solvation = -27471.556524 eV Core-core repulsion = 23481.260878 eV Total energy + Delta-G solvation = -3990.295646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.27376 -40.09638 -38.66008 -37.18380 -36.57880 -35.21001 -32.79274 -32.40131 -31.78085 -30.42094 -28.46976 -26.92302 -25.85952 -24.02205 -23.24901 -22.98881 -21.93302 -21.33927 -19.31919 -19.17457 -18.60464 -17.52392 -16.88784 -16.38216 -16.30695 -15.90129 -15.59327 -14.81819 -14.59123 -14.46198 -14.19639 -14.14990 -13.83510 -13.45103 -13.28797 -12.77095 -12.52613 -12.23875 -12.09886 -11.98493 -11.69309 -11.63090 -11.39370 -11.20541 -11.03022 -10.91530 -10.81558 -10.72991 -10.56648 -10.39536 -10.31684 -10.06757 -9.73638 -9.42305 -9.16440 -8.44326 -8.23752 -7.22617 -6.02260 -4.03973 -0.39119 0.29630 1.10180 1.18336 1.58541 2.70215 3.30692 3.37032 3.40687 3.84332 3.93746 4.11188 4.18199 4.37831 4.41928 4.49597 4.92417 4.94429 4.96192 5.14875 5.27289 5.33112 5.34722 5.39845 5.52128 5.56897 5.69149 5.77596 5.83393 5.87095 6.04092 6.21707 6.39618 6.49433 6.58227 6.63905 7.10898 7.14553 7.35349 7.38223 7.68416 7.79806 8.09737 8.21082 8.55689 9.03379 9.60130 11.08607 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002888 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.377336 B = 9694.190639 C =10685.868830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.069 3.931 13 N -0.527 5.527 14 C 0.077 3.923 15 C -0.002 4.002 16 C -0.104 4.104 17 C -0.060 4.060 18 C -0.043 4.043 19 Cl -0.044 7.044 20 C -0.051 4.051 21 C -0.013 4.013 22 N 0.033 4.967 23 O -0.184 6.184 24 O -0.110 6.110 25 C 0.054 3.946 26 C 0.070 3.930 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.952 -19.623 -7.906 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.058 4.058 13 N -0.252 5.252 14 C -0.051 4.051 15 C -0.004 4.004 16 C -0.123 4.123 17 C -0.079 4.079 18 C -0.071 4.071 19 Cl -0.015 7.015 20 C -0.071 4.071 21 C -0.097 4.097 22 N 0.555 4.445 23 O -0.391 6.391 24 O -0.337 6.337 25 C -0.074 4.074 26 C -0.059 4.059 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.467 -19.348 -8.303 26.125 hybrid contribution 0.080 0.915 -0.271 0.958 sum 15.547 -18.433 -8.574 25.593 Atomic orbital electron populations 1.69958 1.06055 1.26767 1.50922 1.24993 0.94852 0.99282 0.95489 0.86517 0.79797 0.83218 0.77992 1.20781 1.21235 1.19818 1.21142 0.93372 0.89996 1.50114 0.92010 1.19695 0.90033 0.87239 0.96153 1.62306 1.28253 1.02960 1.32821 1.22073 0.94848 0.89674 1.00679 1.22149 0.95720 0.99357 0.88608 1.62075 1.24402 1.02108 1.36629 1.21358 0.95978 0.98117 0.89653 1.20009 0.92425 0.91412 0.96519 1.21181 0.94717 0.99898 0.96483 1.21480 1.00230 0.94143 0.92021 1.20625 0.94072 1.03944 0.88440 1.98416 1.88867 1.94803 1.19383 1.20820 0.95064 0.96680 0.94533 1.20715 0.84359 1.09014 0.95570 1.43275 1.02147 0.98298 1.00798 1.94547 1.49664 1.48448 1.46459 1.94525 1.80488 1.55400 1.03248 1.22344 0.96393 0.88934 0.99720 1.21940 0.95365 0.97127 0.91481 0.92907 0.99120 0.95148 0.95015 0.90808 0.89981 0.94287 0.87116 0.92983 0.82719 0.83031 0.82145 0.93959 0.91910 0.95633 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 10 N -0.54 -11.67 4.70 -235.90 -1.11 -12.78 16 11 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 12 C 0.07 1.02 5.35 -3.77 -0.02 1.00 16 13 N -0.53 -7.42 3.63 -235.91 -0.86 -8.27 16 14 C 0.08 0.82 4.13 -4.98 -0.02 0.80 16 15 C 0.00 -0.01 4.61 -104.62 -0.48 -0.50 16 16 C -0.10 -0.74 9.22 -39.59 -0.36 -1.10 16 17 C -0.06 -0.39 9.83 -39.55 -0.39 -0.77 16 18 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 19 Cl -0.04 -0.32 28.96 -51.86 -1.50 -1.82 16 20 C -0.05 -0.49 9.34 -39.55 -0.37 -0.86 16 21 C -0.01 -0.15 6.83 -79.95 -0.55 -0.69 16 22 N 0.03 0.46 4.45 33.96 0.15 0.61 16 23 O -0.18 -2.75 18.46 -29.46 -0.54 -3.29 16 24 O -0.11 -1.60 13.85 -29.46 -0.41 -2.01 16 25 C 0.05 0.81 5.44 -3.77 -0.02 0.79 16 26 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 29 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.08 1.09 7.47 -51.93 -0.39 0.70 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 1.17 6.03 -51.93 -0.31 0.86 16 35 H 0.05 0.47 7.85 -51.93 -0.41 0.06 16 36 H 0.16 0.75 7.99 -52.49 -0.42 0.33 16 37 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.16 1.42 7.62 -52.49 -0.40 1.02 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.84 7.03 -51.93 -0.37 0.48 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.79 6.79 -51.93 -0.35 1.43 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -31.68 360.03 -11.57 -43.25 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.53 Total: -4.00 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.92 Total: -7.54 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -1.08 Total: -46.58 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.95 Total: -5.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.68 -11.57 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.330 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds