Wall clock time and date at job start Tue Mar 31 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46977 * 269.99874 * 3 2 1 5 5 H 1.48498 * 109.47007 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99999 * 3 2 1 7 7 C 1.37878 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99596 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.46951 * 111.00407 * 170.00156 * 10 9 7 12 12 C 1.53050 * 109.36489 * 183.18893 * 11 10 9 13 13 N 1.46952 * 109.36501 * 301.59601 * 12 11 10 14 14 C 1.46895 * 111.00421 * 183.18855 * 13 12 11 15 15 C 1.50699 * 109.47517 * 164.69485 * 14 13 12 16 16 C 1.38260 * 119.98473 * 106.91694 * 15 14 13 17 17 C 1.38192 * 120.01480 * 180.02562 * 16 15 14 18 18 C 1.38374 * 119.98680 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 120.01716 * 180.02562 * 18 17 16 20 20 C 1.38336 * 119.97061 * 0.02562 * 18 17 16 21 21 C 1.38216 * 119.98694 * 286.93816 * 15 14 13 22 22 N 1.48022 * 119.99640 * 0.25595 * 21 15 14 23 23 O 1.21801 * 119.99908 * 174.20605 * 22 21 15 24 24 O 1.21799 * 119.99456 * 354.20428 * 22 21 15 25 25 C 1.46958 * 110.88043 * 59.31733 * 13 12 11 26 26 C 1.46961 * 110.99494 * 293.79902 * 10 9 7 27 27 H 0.96997 * 120.00257 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47351 * 60.00509 * 9 7 2 29 29 H 1.09005 * 109.47286 * 300.00406 * 9 7 2 30 30 H 1.09003 * 109.49094 * 63.22038 * 11 10 9 31 31 H 1.09004 * 109.48810 * 303.15793 * 11 10 9 32 32 H 1.09002 * 109.48730 * 181.63103 * 12 11 10 33 33 H 1.08998 * 109.48948 * 61.56412 * 12 11 10 34 34 H 1.09006 * 109.47043 * 44.69800 * 14 13 12 35 35 H 1.08999 * 109.47101 * 284.69785 * 14 13 12 36 36 H 1.08001 * 119.99730 * 0.02562 * 16 15 14 37 37 H 1.07999 * 120.01239 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.00674 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.48625 * 60.64846 * 25 13 12 40 40 H 1.09004 * 109.49091 * 180.70974 * 25 13 12 41 41 H 1.08998 * 109.49166 * 296.77556 * 26 10 9 42 42 H 1.09002 * 109.48929 * 56.84503 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5210 -4.8940 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2741 -7.1757 -0.9461 15 6 4.7600 -7.4212 -2.3513 16 6 6.0446 -7.0582 -2.7115 17 6 6.4907 -7.2825 -4.0000 18 6 5.6516 -7.8710 -4.9298 19 17 6.2114 -8.1537 -6.5485 20 6 4.3665 -8.2339 -4.5687 21 6 3.9213 -8.0086 -3.2796 22 7 2.5441 -8.3914 -2.8948 23 8 1.7709 -8.8110 -3.7372 24 8 2.1843 -8.2867 -1.7359 25 6 4.0041 -4.7809 -1.1843 26 6 2.9686 -3.6562 -1.2559 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 0.8254 -5.0915 -0.5780 31 1 0.9733 -4.8433 1.1788 32 1 2.0485 -6.9718 0.4570 33 1 3.2356 -5.8353 1.1419 34 1 3.7835 -8.0733 -0.5694 35 1 5.1215 -6.9292 -0.3064 36 1 6.6996 -6.5992 -1.9857 37 1 7.4942 -6.9993 -4.2813 38 1 3.7112 -8.6937 -5.2938 39 1 4.6997 -4.5834 -0.3686 40 1 4.5518 -4.8315 -2.1254 41 1 2.2895 -3.8396 -2.0885 42 1 3.4765 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:48 Heat of formation + Delta-G solvation = 20.506866 kcal Electronic energy + Delta-G solvation = -27472.405349 eV Core-core repulsion = 23481.260878 eV Total energy + Delta-G solvation = -3991.144471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.23576 -40.89755 -39.91048 -37.91370 -37.57922 -36.61858 -34.66822 -33.14253 -32.85261 -31.80085 -29.99074 -28.12522 -27.15784 -25.37310 -24.53527 -23.83517 -23.30513 -22.66234 -20.65659 -20.11757 -19.60268 -18.53237 -18.48568 -17.56391 -17.25505 -17.03444 -16.45464 -16.38065 -15.84832 -15.78655 -15.46311 -15.18204 -15.06130 -14.67060 -14.52151 -14.03185 -13.66978 -13.43075 -13.32858 -13.00381 -12.86378 -12.77956 -12.66615 -12.55424 -12.48560 -12.25130 -12.21717 -12.15299 -12.07620 -11.97627 -11.63126 -11.47074 -11.17694 -10.69749 -10.63237 -10.09186 -9.32388 -9.05758 -8.21198 -6.32394 -1.23909 -0.34762 0.25190 0.36892 0.89872 1.40656 1.42656 1.54281 2.03401 2.39690 2.94447 3.10920 3.23987 3.29356 3.34539 3.58982 3.68666 3.85185 3.99573 4.13379 4.22529 4.35976 4.36459 4.43547 4.46882 4.57342 4.66512 4.71442 4.74517 4.90072 4.90603 4.98719 5.01363 5.06559 5.11573 5.21134 5.27287 5.43265 5.62671 5.99731 6.02156 6.10381 6.32534 6.59340 6.60267 6.83718 7.37647 8.90417 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002888 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.377336 B = 9694.190639 C =10685.868830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.054 3.946 12 C 0.082 3.918 13 N -0.544 5.544 14 C 0.079 3.921 15 C -0.011 4.011 16 C -0.091 4.091 17 C -0.043 4.043 18 C -0.043 4.043 19 Cl -0.038 7.038 20 C -0.060 4.060 21 C -0.033 4.033 22 N 0.034 4.966 23 O -0.225 6.225 24 O -0.120 6.120 25 C 0.070 3.930 26 C 0.070 3.930 27 H 0.264 0.736 28 H -0.048 1.048 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.190 0.810 37 H 0.187 0.813 38 H 0.157 0.843 39 H 0.055 0.945 40 H 0.086 0.914 41 H -0.001 1.001 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.188 -19.558 -7.820 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.074 4.074 12 C -0.045 4.045 13 N -0.269 5.269 14 C -0.047 4.047 15 C -0.013 4.013 16 C -0.110 4.110 17 C -0.061 4.061 18 C -0.071 4.071 19 Cl -0.009 7.009 20 C -0.080 4.080 21 C -0.117 4.117 22 N 0.550 4.450 23 O -0.425 6.425 24 O -0.348 6.348 25 C -0.058 4.058 26 C -0.059 4.059 27 H 0.073 0.927 28 H -0.030 1.030 29 H 0.021 0.979 30 H 0.027 0.973 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.207 0.793 37 H 0.204 0.796 38 H 0.174 0.826 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.018 0.982 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.689 -19.339 -8.259 28.808 hybrid contribution -1.184 0.848 -0.351 1.497 sum 18.506 -18.491 -8.610 27.541 Atomic orbital electron populations 1.70106 1.07960 1.27962 1.51748 1.25994 0.95745 1.03472 0.94735 0.85326 0.78646 0.77903 0.78406 1.19865 1.20853 1.18401 1.21442 0.93677 0.90800 1.50085 0.91495 1.19348 0.90141 0.89296 0.92994 1.62269 1.27086 1.02937 1.33978 1.22170 0.95914 0.89715 0.99639 1.21990 0.95027 0.97996 0.89503 1.61948 1.25916 1.02747 1.36332 1.21377 0.96094 0.96450 0.90806 1.20122 0.93407 0.92015 0.95791 1.21570 0.93585 0.98559 0.97303 1.21916 1.01192 0.91809 0.91178 1.20761 0.93578 1.03693 0.89090 1.98425 1.88598 1.94772 1.19103 1.20885 0.96009 0.97130 0.93984 1.20862 0.82765 1.11141 0.96885 1.43690 1.03255 0.97660 1.00400 1.94531 1.51155 1.50263 1.46545 1.94483 1.81318 1.55376 1.03619 1.22150 0.94665 0.87530 1.01432 1.21956 0.95646 0.98778 0.89471 0.92692 1.03033 0.97871 0.97283 0.90960 0.88376 0.93091 0.87239 0.89982 0.79319 0.79581 0.82565 0.92689 0.89617 0.98239 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.52 -29.91 8.47 25.60 0.22 -29.70 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 11.59 4.72 85.56 0.40 11.99 16 10 N -0.54 -23.94 4.70 -900.26 -4.23 -28.17 16 11 C 0.05 2.07 5.61 86.31 0.48 2.55 16 12 C 0.08 2.32 5.35 86.31 0.46 2.79 16 13 N -0.54 -14.31 3.63 -900.29 -3.27 -17.58 16 14 C 0.08 1.44 4.13 85.56 0.35 1.79 16 15 C -0.01 -0.19 4.61 -19.86 -0.09 -0.28 16 16 C -0.09 -0.85 9.22 22.26 0.21 -0.64 16 17 C -0.04 -0.35 9.83 22.29 0.22 -0.13 16 18 C -0.04 -0.57 6.32 22.33 0.14 -0.43 16 19 Cl -0.04 -0.47 28.96 -2.72 -0.08 -0.55 16 20 C -0.06 -1.08 9.34 22.29 0.21 -0.88 16 21 C -0.03 -0.70 6.83 36.37 0.25 -0.45 16 22 N 0.03 0.96 4.45 -46.47 -0.21 0.76 16 23 O -0.22 -7.13 18.46 18.88 0.35 -6.78 16 24 O -0.12 -3.53 13.85 18.89 0.26 -3.26 16 25 C 0.07 1.94 5.44 86.31 0.47 2.41 16 26 C 0.07 2.78 5.43 86.31 0.47 3.24 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H -0.05 -2.97 8.12 -2.39 -0.02 -2.99 16 29 H 0.00 0.19 8.03 -2.38 -0.02 0.17 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 2.72 8.07 -2.38 -0.02 2.70 16 32 H 0.10 2.48 7.47 -2.39 -0.02 2.46 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 2.06 6.03 -2.38 -0.01 2.04 16 35 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 36 H 0.19 0.54 7.99 -2.91 -0.02 0.52 16 37 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 38 H 0.16 2.83 7.62 -2.91 -0.02 2.81 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.99 7.03 -2.38 -0.02 1.98 16 41 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.07 2.97 6.79 -2.39 -0.02 2.95 16 Total: -1.00 -73.09 360.03 0.43 -72.66 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.04 Total: 1.42 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.25 Total: -7.36 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -7.42 Total: -102.43 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.61 Total: -10.05 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -73.09 0.43 -72.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.170 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds