Wall clock time and date at job start Tue Mar 31 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48503 * 109.47052 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.46999 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.46973 * 150.00107 * 3 2 1 7 7 C 1.37877 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.46957 * 110.99977 * 169.99819 * 10 9 7 12 12 C 1.53051 * 109.36069 * 183.18835 * 11 10 9 13 13 N 1.46961 * 109.36256 * 301.59742 * 12 11 10 14 14 C 1.46907 * 110.99621 * 183.19149 * 13 12 11 15 15 C 1.50696 * 109.46757 * 170.00313 * 14 13 12 16 16 C 1.38241 * 120.00715 * 105.00146 * 15 14 13 17 17 C 1.38225 * 120.01088 * 179.97438 * 16 15 14 18 18 C 1.38264 * 120.02863 * 359.97438 * 17 16 15 19 19 N 1.48015 * 119.99274 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00036 * 0.02562 * 19 18 17 21 21 O 1.21802 * 119.99966 * 180.02562 * 19 18 17 22 22 C 1.38191 * 120.01082 * 0.04802 * 18 17 16 23 23 C 1.38332 * 120.00693 * 284.99547 * 15 14 13 24 24 Cl 1.73594 * 120.01197 * 0.04888 * 23 15 14 25 25 C 1.46955 * 110.87846 * 59.32582 * 13 12 11 26 26 C 1.46953 * 110.99711 * 293.80184 * 10 9 7 27 27 H 0.97001 * 119.99536 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47365 * 59.99817 * 9 7 2 29 29 H 1.09004 * 109.47337 * 299.99813 * 9 7 2 30 30 H 1.09003 * 109.48805 * 63.22105 * 11 10 9 31 31 H 1.09000 * 109.49182 * 303.15433 * 11 10 9 32 32 H 1.08997 * 109.48835 * 181.63539 * 12 11 10 33 33 H 1.08995 * 109.49324 * 61.56790 * 12 11 10 34 34 H 1.08993 * 109.47027 * 50.00302 * 14 13 12 35 35 H 1.09001 * 109.46679 * 289.99774 * 14 13 12 36 36 H 1.07999 * 119.99419 * 0.24986 * 16 15 14 37 37 H 1.07998 * 119.98129 * 179.97438 * 17 16 15 38 38 H 1.08002 * 120.00205 * 179.97438 * 22 18 17 39 39 H 1.08998 * 109.49246 * 60.64835 * 25 13 12 40 40 H 1.09000 * 109.48807 * 180.70971 * 25 13 12 41 41 H 1.09008 * 109.48835 * 296.77698 * 26 10 9 42 42 H 1.09000 * 109.49420 * 56.84166 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 1.5207 -4.8938 0.2421 12 6 2.5562 -6.0185 0.3148 13 7 3.3192 -6.0602 -0.9406 14 6 4.2737 -7.1769 -0.9396 15 6 4.8577 -7.3396 -2.3192 16 6 6.1503 -6.9224 -2.5765 17 6 6.6862 -7.0721 -3.8418 18 6 5.9301 -7.6397 -4.8507 19 7 6.5049 -7.8002 -6.2052 20 8 7.6441 -7.4327 -6.4308 21 8 5.8388 -8.2998 -7.0942 22 6 4.6377 -8.0568 -4.5948 23 6 4.1005 -7.9067 -3.3285 24 17 2.4769 -8.4299 -3.0065 25 6 4.0040 -4.7821 -1.1799 26 6 2.9685 -3.6574 -1.2525 27 1 -0.4849 0.8401 0.0004 28 1 0.6239 -2.5575 -0.8879 29 1 0.6246 -2.5563 0.8920 30 1 0.8251 -5.0920 -0.5733 31 1 0.9732 -4.8424 1.1832 32 1 2.0483 -6.9714 0.4633 33 1 3.2353 -5.8344 1.1471 34 1 3.7597 -8.0939 -0.6521 35 1 5.0737 -6.9703 -0.2285 36 1 6.7430 -6.4834 -1.7876 37 1 7.6959 -6.7456 -4.0424 38 1 4.0471 -8.4997 -5.3831 39 1 4.6996 -4.5840 -0.3645 40 1 4.5515 -4.8336 -2.1210 41 1 2.2894 -3.8416 -2.0850 42 1 3.4765 -2.7045 -1.4012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611794036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:41 Heat of formation + Delta-G solvation = 32.402649 kcal Electronic energy + Delta-G solvation = -26785.230558 eV Core-core repulsion = 22794.601927 eV Total energy + Delta-G solvation = -3990.628631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48706 -40.33708 -38.67417 -36.93661 -36.82120 -35.52786 -33.07731 -32.16688 -31.64074 -30.55510 -28.99923 -27.19105 -25.45839 -23.82547 -23.78011 -23.14121 -21.88695 -21.36632 -19.79349 -19.31992 -18.95985 -17.82931 -16.53148 -16.47316 -16.36155 -16.01843 -15.72558 -14.87038 -14.63615 -14.53078 -14.28589 -14.18026 -14.06172 -13.59211 -13.28037 -12.60198 -12.47138 -12.18119 -12.13594 -12.01666 -11.83821 -11.78839 -11.62250 -11.41989 -11.27147 -11.18173 -10.97091 -10.83128 -10.71598 -10.52298 -10.39152 -9.92780 -9.81409 -9.48239 -9.23667 -8.49768 -8.37573 -7.31977 -6.07541 -4.09379 -0.58311 0.33618 0.92442 0.96115 1.68624 2.66113 3.27863 3.34443 3.37843 3.77130 3.91595 4.03581 4.11318 4.31425 4.37584 4.46545 4.83631 4.88821 4.91953 5.07503 5.13783 5.20937 5.28123 5.28285 5.39964 5.54210 5.63681 5.66194 5.68665 5.74736 5.91506 6.05027 6.06167 6.33170 6.47184 6.57978 6.94874 6.99126 7.25417 7.29720 7.32443 7.73659 8.02095 8.12964 8.48093 8.97852 9.55146 11.03309 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.002786 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.365774 B =10048.966252 C =11163.023393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.064 3.936 13 N -0.528 5.528 14 C 0.082 3.918 15 C -0.013 4.013 16 C -0.101 4.101 17 C -0.051 4.051 18 C -0.038 4.038 19 N 0.030 4.970 20 O -0.156 6.156 21 O -0.157 6.157 22 C -0.051 4.051 23 C -0.017 4.017 24 Cl -0.022 7.022 25 C 0.056 3.944 26 C 0.069 3.931 27 H 0.262 0.738 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.986 -19.684 -4.365 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.063 4.063 13 N -0.253 5.253 14 C -0.046 4.046 15 C -0.014 4.014 16 C -0.120 4.120 17 C -0.071 4.071 18 C -0.121 4.121 19 N 0.550 4.450 20 O -0.372 6.372 21 O -0.374 6.374 22 C -0.071 4.071 23 C -0.046 4.046 24 Cl 0.008 6.992 25 C -0.072 4.072 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.375 -19.516 -3.653 22.402 hybrid contribution 0.335 0.900 -0.442 1.057 sum 10.710 -18.616 -4.095 21.864 Atomic orbital electron populations 1.69958 1.06074 1.26830 1.50850 1.24992 0.94861 0.99328 0.95398 0.86512 0.79797 0.83134 0.78065 1.20712 1.21220 1.19793 1.21131 0.93393 0.89950 1.50257 0.91974 1.19694 0.90002 0.87227 0.96138 1.62306 1.28210 1.02798 1.33024 1.22059 0.94678 0.89846 1.00659 1.22169 0.96038 0.98930 0.89197 1.62212 1.24610 1.02650 1.35822 1.21172 0.95715 0.97164 0.90528 1.20256 0.92872 0.92108 0.96207 1.21158 0.94668 0.99735 0.96466 1.21120 1.00966 0.93894 0.91071 1.20902 0.95890 1.11615 0.83696 1.43520 1.00615 0.98135 1.02708 1.94551 1.03053 1.51742 1.87897 1.94561 1.60355 1.44121 1.38317 1.20843 0.92781 0.96353 0.97116 1.20502 0.89123 1.01792 0.93142 1.98431 1.17315 1.88164 1.95329 1.22322 0.96395 0.88564 0.99947 1.21958 0.95390 0.97213 0.91433 0.92877 0.99061 0.95211 0.95016 0.90845 0.90945 0.93962 0.88659 0.92693 0.82652 0.82330 0.82041 0.93947 0.91551 0.95308 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.93 8.47 -34.44 -0.29 -14.23 16 8 H 0.06 1.68 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.94 4.72 -4.97 -0.02 4.91 16 10 N -0.54 -11.03 4.70 -235.90 -1.11 -12.14 16 11 C 0.06 0.96 5.61 -3.77 -0.02 0.93 16 12 C 0.06 0.83 5.61 -3.76 -0.02 0.81 16 13 N -0.53 -6.43 4.60 -235.91 -1.08 -7.52 16 14 C 0.08 0.73 4.43 -4.97 -0.02 0.70 16 15 C -0.01 -0.11 4.43 -104.59 -0.46 -0.57 16 16 C -0.10 -0.72 9.03 -39.59 -0.36 -1.07 16 17 C -0.05 -0.40 9.55 -39.58 -0.38 -0.78 16 18 C -0.04 -0.37 6.85 -79.96 -0.55 -0.92 16 19 N 0.03 0.35 4.45 33.96 0.15 0.51 16 20 O -0.16 -1.92 18.45 -29.46 -0.54 -2.46 16 21 O -0.16 -1.99 18.45 -29.46 -0.54 -2.53 16 22 C -0.05 -0.48 9.34 -39.55 -0.37 -0.85 16 23 C -0.02 -0.16 6.31 -39.50 -0.25 -0.41 16 24 Cl -0.02 -0.21 27.55 -51.86 -1.43 -1.64 16 25 C 0.06 0.77 5.42 -3.77 -0.02 0.75 16 26 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.77 7.47 -51.93 -0.39 0.38 16 35 H 0.05 0.42 7.93 -51.93 -0.41 0.01 16 36 H 0.16 0.75 8.00 -52.49 -0.42 0.33 16 37 H 0.16 0.98 7.61 -52.49 -0.40 0.58 16 38 H 0.16 1.36 7.61 -52.49 -0.40 0.97 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.83 6.71 -51.93 -0.35 0.48 16 41 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.09 1.73 6.79 -51.93 -0.35 1.38 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -30.49 365.43 -11.82 -42.30 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -5.60 Total: -4.63 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.88 Total: -8.01 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -1.31 Total: -44.79 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -1.09 Total: -4.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.43 Total: -1.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.49 -11.82 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611794036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.704 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds