Wall clock time and date at job start Tue Mar 31 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48503 * 109.47052 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.46999 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.46973 * 150.00107 * 3 2 1 7 7 C 1.37877 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.46957 * 110.99977 * 169.99819 * 10 9 7 12 12 C 1.53051 * 109.36069 * 183.18835 * 11 10 9 13 13 N 1.46961 * 109.36256 * 301.59742 * 12 11 10 14 14 C 1.46907 * 110.99621 * 183.19149 * 13 12 11 15 15 C 1.50696 * 109.46757 * 170.00313 * 14 13 12 16 16 C 1.38241 * 120.00715 * 105.00146 * 15 14 13 17 17 C 1.38225 * 120.01088 * 179.97438 * 16 15 14 18 18 C 1.38264 * 120.02863 * 359.97438 * 17 16 15 19 19 N 1.48015 * 119.99274 * 180.02562 * 18 17 16 20 20 O 1.21803 * 120.00036 * 0.02562 * 19 18 17 21 21 O 1.21802 * 119.99966 * 180.02562 * 19 18 17 22 22 C 1.38191 * 120.01082 * 0.04802 * 18 17 16 23 23 C 1.38332 * 120.00693 * 284.99547 * 15 14 13 24 24 Cl 1.73594 * 120.01197 * 0.04888 * 23 15 14 25 25 C 1.46955 * 110.87846 * 59.32582 * 13 12 11 26 26 C 1.46953 * 110.99711 * 293.80184 * 10 9 7 27 27 H 0.97001 * 119.99536 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47365 * 59.99817 * 9 7 2 29 29 H 1.09004 * 109.47337 * 299.99813 * 9 7 2 30 30 H 1.09003 * 109.48805 * 63.22105 * 11 10 9 31 31 H 1.09000 * 109.49182 * 303.15433 * 11 10 9 32 32 H 1.08997 * 109.48835 * 181.63539 * 12 11 10 33 33 H 1.08995 * 109.49324 * 61.56790 * 12 11 10 34 34 H 1.08993 * 109.47027 * 50.00302 * 14 13 12 35 35 H 1.09001 * 109.46679 * 289.99774 * 14 13 12 36 36 H 1.07999 * 119.99419 * 0.24986 * 16 15 14 37 37 H 1.07998 * 119.98129 * 179.97438 * 17 16 15 38 38 H 1.08002 * 120.00205 * 179.97438 * 22 18 17 39 39 H 1.08998 * 109.49246 * 60.64835 * 25 13 12 40 40 H 1.09000 * 109.48807 * 180.70971 * 25 13 12 41 41 H 1.09008 * 109.48835 * 296.77698 * 26 10 9 42 42 H 1.09000 * 109.49420 * 56.84166 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 1.5207 -4.8938 0.2421 12 6 2.5562 -6.0185 0.3148 13 7 3.3192 -6.0602 -0.9406 14 6 4.2737 -7.1769 -0.9396 15 6 4.8577 -7.3396 -2.3192 16 6 6.1503 -6.9224 -2.5765 17 6 6.6862 -7.0721 -3.8418 18 6 5.9301 -7.6397 -4.8507 19 7 6.5049 -7.8002 -6.2052 20 8 7.6441 -7.4327 -6.4308 21 8 5.8388 -8.2998 -7.0942 22 6 4.6377 -8.0568 -4.5948 23 6 4.1005 -7.9067 -3.3285 24 17 2.4769 -8.4299 -3.0065 25 6 4.0040 -4.7821 -1.1799 26 6 2.9685 -3.6574 -1.2525 27 1 -0.4849 0.8401 0.0004 28 1 0.6239 -2.5575 -0.8879 29 1 0.6246 -2.5563 0.8920 30 1 0.8251 -5.0920 -0.5733 31 1 0.9732 -4.8424 1.1832 32 1 2.0483 -6.9714 0.4633 33 1 3.2353 -5.8344 1.1471 34 1 3.7597 -8.0939 -0.6521 35 1 5.0737 -6.9703 -0.2285 36 1 6.7430 -6.4834 -1.7876 37 1 7.6959 -6.7456 -4.0424 38 1 4.0471 -8.4997 -5.3831 39 1 4.6996 -4.5840 -0.3645 40 1 4.5515 -4.8336 -2.1210 41 1 2.2894 -3.8416 -2.0850 42 1 3.4765 -2.7045 -1.4012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611794036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:40 Heat of formation + Delta-G solvation = 13.772549 kcal Electronic energy + Delta-G solvation = -26786.038420 eV Core-core repulsion = 22794.601927 eV Total energy + Delta-G solvation = -3991.436493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.33807 -41.09725 -39.85304 -37.77124 -37.60105 -36.85644 -34.75541 -33.40877 -32.30082 -31.81188 -30.30025 -28.56804 -26.78583 -25.05773 -24.58419 -24.20941 -23.30148 -22.47475 -20.64527 -20.54163 -19.83965 -18.68856 -18.49977 -17.46870 -17.18095 -16.98669 -16.49586 -16.40842 -15.83649 -15.75058 -15.42668 -15.17903 -15.08268 -14.94902 -14.49796 -14.06105 -13.54181 -13.38830 -13.09189 -13.04730 -12.86480 -12.81682 -12.71334 -12.67662 -12.49023 -12.37674 -12.36240 -12.25087 -12.11237 -12.03264 -11.84436 -11.49540 -11.19909 -10.64072 -10.58639 -10.16800 -9.34182 -9.03785 -8.21989 -6.32441 -1.38699 -0.29630 0.12032 0.18550 0.97603 1.40596 1.41646 1.53184 1.99023 2.39009 2.92494 3.10628 3.27887 3.29754 3.31817 3.45842 3.64334 3.82313 3.97882 4.15427 4.22000 4.31335 4.38440 4.43786 4.47309 4.53363 4.61082 4.67818 4.68735 4.87192 4.92791 4.99612 5.00452 5.03465 5.05243 5.22494 5.27021 5.28003 5.62556 5.96888 6.00112 6.06426 6.32718 6.39160 6.61852 6.83957 7.37671 8.89318 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.002786 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.365774 B =10048.966252 C =11163.023393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.541 5.541 11 C 0.053 3.947 12 C 0.077 3.923 13 N -0.539 5.539 14 C 0.085 3.915 15 C -0.015 4.015 16 C -0.088 4.088 17 C -0.044 4.044 18 C -0.050 4.050 19 N 0.031 4.969 20 O -0.160 6.160 21 O -0.189 6.189 22 C -0.057 4.057 23 C -0.024 4.024 24 Cl -0.031 7.031 25 C 0.071 3.929 26 C 0.069 3.931 27 H 0.264 0.736 28 H -0.045 1.045 29 H 0.003 0.997 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.161 0.839 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.007 0.993 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -20.187 -3.237 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.265 5.265 11 C -0.075 4.075 12 C -0.051 4.051 13 N -0.264 5.264 14 C -0.042 4.042 15 C -0.016 4.016 16 C -0.107 4.107 17 C -0.063 4.063 18 C -0.133 4.133 19 N 0.547 4.453 20 O -0.378 6.378 21 O -0.399 6.399 22 C -0.077 4.077 23 C -0.053 4.053 24 Cl -0.002 7.002 25 C -0.057 4.057 26 C -0.059 4.059 27 H 0.073 0.927 28 H -0.027 1.027 29 H 0.021 0.979 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.206 0.794 37 H 0.195 0.805 38 H 0.179 0.821 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.026 0.974 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.019 -20.074 -2.559 24.062 hybrid contribution -0.509 1.013 -0.764 1.367 sum 12.510 -19.060 -3.323 23.040 Atomic orbital electron populations 1.70096 1.07844 1.27902 1.51830 1.25942 0.95719 1.03309 0.94819 0.85381 0.78682 0.78192 0.78372 1.19966 1.20877 1.18531 1.21451 0.93644 0.90943 1.49939 0.91662 1.19330 0.90105 0.89175 0.93098 1.62243 1.27129 1.03017 1.34153 1.22174 0.95903 0.89641 0.99824 1.22041 0.95226 0.98044 0.89772 1.62095 1.25856 1.02877 1.35603 1.21241 0.95832 0.96009 0.91135 1.20374 0.93440 0.91982 0.95837 1.21498 0.94077 0.98411 0.96711 1.21429 1.01538 0.92643 0.90693 1.21052 0.96401 1.13012 0.82848 1.43816 1.00436 0.97617 1.03428 1.94523 1.03397 1.51528 1.88307 1.94559 1.60517 1.45433 1.39397 1.20869 0.92852 0.96563 0.97369 1.20571 0.88886 1.02404 0.93403 1.98429 1.18087 1.88355 1.95319 1.22103 0.94661 0.87572 1.01319 1.21949 0.95732 0.98598 0.89649 0.92720 1.02713 0.97882 0.96561 0.91140 0.88214 0.93185 0.87489 0.90128 0.79404 0.80467 0.82117 0.92997 0.89728 0.97450 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.52 -29.15 8.47 25.60 0.22 -28.93 16 8 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 9 C 0.21 11.12 4.72 85.56 0.40 11.53 16 10 N -0.54 -22.46 4.70 -900.26 -4.23 -26.70 16 11 C 0.05 1.79 5.61 86.31 0.48 2.28 16 12 C 0.08 1.77 5.61 86.31 0.48 2.26 16 13 N -0.54 -11.53 4.60 -900.29 -4.14 -15.67 16 14 C 0.08 1.13 4.43 85.55 0.38 1.51 16 15 C -0.01 -0.20 4.43 -19.84 -0.09 -0.29 16 16 C -0.09 -0.86 9.03 22.27 0.20 -0.65 16 17 C -0.04 -0.54 9.55 22.27 0.21 -0.33 16 18 C -0.05 -0.89 6.85 36.37 0.25 -0.64 16 19 N 0.03 0.71 4.45 -46.48 -0.21 0.50 16 20 O -0.16 -3.76 18.45 18.88 0.35 -3.41 16 21 O -0.19 -4.85 18.45 18.88 0.35 -4.50 16 22 C -0.06 -0.99 9.34 22.29 0.21 -0.78 16 23 C -0.02 -0.41 6.31 22.32 0.14 -0.26 16 24 Cl -0.03 -0.57 27.55 -2.72 -0.07 -0.65 16 25 C 0.07 1.78 5.42 86.31 0.47 2.24 16 26 C 0.07 2.56 5.43 86.31 0.47 3.02 16 27 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 28 H -0.04 -2.65 8.12 -2.39 -0.02 -2.67 16 29 H 0.00 0.18 8.03 -2.39 -0.02 0.16 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.10 1.81 8.07 -2.39 -0.02 1.79 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.26 7.47 -2.39 -0.02 1.24 16 35 H 0.08 0.76 7.93 -2.39 -0.02 0.74 16 36 H 0.19 0.66 8.00 -2.91 -0.02 0.64 16 37 H 0.18 1.53 7.61 -2.91 -0.02 1.50 16 38 H 0.16 2.73 7.61 -2.91 -0.02 2.71 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.82 6.71 -2.39 -0.02 1.80 16 41 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 42 H 0.07 2.67 6.79 -2.39 -0.02 2.65 16 Total: -1.00 -68.94 365.43 -0.32 -69.26 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.04 Total: 0.18 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.29 Total: -8.59 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -8.29 Total: -98.00 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.70 Total: -7.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.07 Total: -0.65 kcal Total: -68.94 -0.32 -69.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611794036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.029 kcal (2) G-P(sol) polarization free energy of solvation -68.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds