Wall clock time and date at job start Tue Mar 31 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47080 * 240.00161 * 3 2 1 5 5 H 1.48504 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47412 * 119.99664 * 3 2 1 7 7 C 1.39901 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99907 * 175.56176 * 7 2 1 9 9 C 1.41155 * 120.00303 * 355.56161 * 7 2 1 10 10 C 1.40870 * 120.16212 * 214.78021 * 9 7 2 11 11 C 1.36381 * 119.82498 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16716 * 0.02562 * 11 10 9 13 13 N 1.39235 * 119.82902 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00349 * 35.28813 * 13 12 11 15 15 O 1.21284 * 119.99937 * 355.70968 * 14 13 12 16 16 C 1.50697 * 120.00335 * 175.70665 * 14 13 12 17 17 N 1.46494 * 109.47319 * 179.97438 * 16 14 13 18 18 N 1.40162 * 126.01469 * 265.33844 * 17 16 14 19 19 H 0.96998 * 125.45286 * 359.97438 * 18 17 16 20 20 C 1.34332 * 109.08543 * 180.13848 * 18 17 16 21 21 C 1.38383 * 108.50267 * 359.57564 * 20 18 17 22 22 C 1.46811 * 134.77623 * 180.26346 * 21 20 18 23 23 O 1.22104 * 121.29787 * 359.97438 * 22 21 20 24 24 N 1.34411 * 117.40035 * 180.02562 * 22 21 20 25 25 C 1.31372 * 120.95062 * 359.92322 * 24 22 21 26 26 N 1.32034 * 123.74425 * 0.06214 * 25 24 22 27 27 C 1.32384 * 121.66657 * 359.97438 * 26 25 24 28 28 C 1.39478 * 120.33347 * 0.25056 * 12 11 10 29 29 C 1.36370 * 120.17176 * 359.44382 * 28 12 11 30 30 H 0.97000 * 120.00305 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.08895 * 359.97438 * 10 9 7 32 32 H 1.07993 * 119.91504 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99900 * 215.28292 * 13 12 11 34 34 H 1.09004 * 109.46995 * 59.99469 * 16 14 13 35 35 H 1.09001 * 109.47545 * 300.00687 * 16 14 13 36 36 H 1.08004 * 125.74441 * 179.84410 * 20 18 17 37 37 H 1.08000 * 118.12835 * 180.02562 * 25 24 22 38 38 H 1.08008 * 119.91439 * 179.72944 * 28 12 11 39 39 H 1.08004 * 120.08957 * 180.25388 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3057 -2.4322 0.0957 10 6 1.8651 -3.5179 0.7976 11 6 1.1805 -4.6943 0.8847 12 6 -0.0700 -4.8240 0.2807 13 7 -0.7625 -6.0283 0.3737 14 6 -0.6808 -6.7677 1.4975 15 8 0.0564 -6.4240 2.3972 16 6 -1.5053 -8.0215 1.6363 17 7 -1.2390 -8.6396 2.9375 18 7 -0.3095 -9.6574 3.1916 19 1 0.2667 -10.0711 2.5300 20 6 -0.3470 -9.9705 4.4973 21 6 -1.2860 -9.1637 5.1156 22 6 -1.7783 -9.0171 6.4909 23 8 -1.3412 -9.7076 7.3982 24 7 -2.7298 -8.0938 6.7122 25 6 -3.1948 -7.3543 5.7310 26 7 -2.7821 -7.4509 4.4806 27 6 -1.8497 -8.3194 4.1216 28 6 -0.6277 -3.7552 -0.4208 29 6 0.0421 -2.5707 -0.5113 30 1 -0.4850 0.8400 -0.0004 31 1 2.8338 -3.4194 1.2647 32 1 1.6078 -5.5275 1.4228 33 1 -1.3039 -6.3351 -0.3704 34 1 -1.2414 -8.7196 0.8419 35 1 -2.5635 -7.7705 1.5626 36 1 0.2573 -10.7221 4.9835 37 1 -3.9587 -6.6260 5.9602 38 1 -1.5945 -3.8644 -0.8896 39 1 -0.3928 -1.7426 -1.0514 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730517436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:37 Heat of formation + Delta-G solvation = 100.194722 kcal Electronic energy + Delta-G solvation = -27573.450880 eV Core-core repulsion = 23484.654440 eV Total energy + Delta-G solvation = -4088.796440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54205 -40.03158 -39.21929 -37.48848 -36.98497 -34.75553 -34.19974 -33.11858 -32.47712 -30.69318 -29.82213 -29.45849 -28.08621 -25.25652 -24.99133 -23.45323 -22.29215 -21.42091 -20.85904 -20.14593 -19.50294 -18.59696 -17.77714 -17.37123 -16.85017 -16.66572 -16.07010 -15.95262 -15.57483 -15.30459 -15.06530 -14.49600 -14.44126 -14.06118 -13.85498 -13.82651 -13.39208 -12.80907 -12.75998 -12.64607 -12.28834 -11.85169 -11.51847 -11.29051 -11.25866 -11.15217 -10.87472 -10.74548 -10.24322 -9.92424 -9.80591 -9.64856 -9.63631 -9.31965 -9.08616 -8.69212 -8.08261 -7.70955 -7.05526 -6.73825 -4.47624 0.00828 0.39273 1.54239 2.21162 2.35484 2.69145 2.77747 2.94885 3.03177 3.04759 3.09752 3.28908 3.81013 3.86572 3.89225 4.12683 4.29315 4.36244 4.49945 4.55301 4.61886 4.68522 4.76667 4.97944 5.50269 5.69621 5.88438 6.02589 6.23058 6.34747 6.47509 6.50354 6.69296 6.90700 7.02111 7.13773 7.33940 7.47176 7.51410 7.63890 7.90365 8.01447 8.16070 8.17603 8.32660 8.51406 8.65419 8.79613 8.83925 10.17003 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.002398 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.612148 B =11671.365471 C =12242.657358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.208 4.208 11 C -0.081 4.081 12 C -0.007 4.007 13 N -0.638 5.638 14 C 0.474 3.526 15 O -0.511 6.511 16 C 0.115 3.885 17 N -0.351 5.351 18 N -0.424 5.424 19 H 0.460 0.540 20 C 0.257 3.743 21 C -0.385 4.385 22 C 0.564 3.436 23 O -0.525 6.525 24 N -0.643 5.643 25 C 0.431 3.569 26 N -0.629 5.629 27 C 0.478 3.522 28 C -0.114 4.114 29 C -0.142 4.142 30 H 0.280 0.720 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.398 0.602 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.222 0.778 37 H 0.195 0.805 38 H 0.093 0.907 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -18.176 -3.986 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.228 4.228 11 C -0.101 4.101 12 C -0.099 4.099 13 N -0.282 5.282 14 C 0.257 3.743 15 O -0.386 6.386 16 C -0.009 4.009 17 N -0.146 5.146 18 N -0.133 5.133 19 H 0.309 0.691 20 C 0.105 3.895 21 C -0.404 4.404 22 C 0.350 3.650 23 O -0.403 6.403 24 N -0.387 5.387 25 C 0.139 3.861 26 N -0.368 5.368 27 C 0.224 3.776 28 C -0.134 4.134 29 C -0.162 4.162 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.231 0.769 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.238 0.762 37 H 0.211 0.789 38 H 0.111 0.889 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.683 -17.618 -2.973 18.243 hybrid contribution 0.962 0.070 -1.095 1.460 sum -2.721 -17.548 -4.068 18.218 Atomic orbital electron populations 1.69737 1.07329 1.29120 1.37186 1.25909 0.94988 1.01318 0.92408 0.86214 0.79825 0.79907 0.79851 1.18988 1.20288 1.18991 1.19505 0.94809 0.90235 1.44376 0.90525 1.17743 0.92230 0.91964 0.87921 1.20795 1.01358 0.94961 1.05690 1.20308 0.92787 0.97754 0.99224 1.17171 0.94327 0.85663 1.12779 1.42820 1.48541 1.21384 1.15432 1.20592 0.84516 0.85868 0.83329 1.90798 1.38370 1.70015 1.39440 1.21972 1.03686 0.94497 0.80767 1.45956 1.31059 1.29894 1.07732 1.43991 1.31661 1.27432 1.10182 0.69109 1.23175 0.92057 0.93642 0.80621 1.22430 1.09153 1.07510 1.01340 1.18245 0.80692 0.82165 0.83905 1.90767 1.58148 1.45033 1.46375 1.69731 1.19758 1.14502 1.34674 1.24609 0.90299 0.89987 0.81184 1.67335 1.20621 1.26630 1.22170 1.18487 0.88263 0.88414 0.82446 1.20299 0.98277 0.93009 1.01849 1.21213 0.97307 0.95577 1.02148 0.90852 0.88584 0.87923 0.76858 0.85863 0.83775 0.76167 0.78909 0.88900 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.32 10.60 55.55 0.59 -19.73 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 3 Si 0.92 18.45 29.56 -169.99 -5.03 13.43 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -11.81 9.02 -37.85 -0.34 -12.15 16 8 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.21 -5.02 9.74 -39.26 -0.38 -5.40 16 11 C -0.08 -1.79 8.61 -39.79 -0.34 -2.13 16 12 C -0.01 -0.15 6.31 -83.57 -0.53 -0.68 16 13 N -0.64 -8.84 5.30 -9.74 -0.05 -8.89 16 14 C 0.47 6.33 7.73 -10.99 -0.08 6.25 16 15 O -0.51 -9.59 13.85 5.55 0.08 -9.51 16 16 C 0.11 0.82 6.94 -5.20 -0.04 0.78 16 17 N -0.35 -3.18 3.16 -61.30 -0.19 -3.37 16 18 N -0.42 -2.12 7.14 30.93 0.22 -1.90 16 19 H 0.46 0.15 8.96 -182.55 -1.64 -1.49 16 20 C 0.26 1.74 12.05 -16.40 -0.20 1.54 16 21 C -0.38 -5.01 6.37 -104.91 -0.67 -5.67 16 22 C 0.56 9.89 8.00 -12.96 -0.10 9.78 16 23 O -0.53 -10.50 18.03 4.82 0.09 -10.41 16 24 N -0.64 -11.20 10.50 -15.03 -0.16 -11.35 16 25 C 0.43 6.25 12.18 -92.31 -1.12 5.13 16 26 N -0.63 -9.27 10.39 -13.70 -0.14 -9.41 16 27 C 0.48 6.30 8.09 -155.79 -1.26 5.04 16 28 C -0.11 -2.39 9.90 -39.79 -0.39 -2.78 16 29 C -0.14 -3.46 8.61 -39.26 -0.34 -3.80 16 30 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 31 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.10 2.22 6.22 -52.49 -0.33 1.89 16 33 H 0.40 3.70 8.82 -40.82 -0.36 3.34 16 34 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.22 0.50 8.06 -52.48 -0.42 0.07 16 37 H 0.19 2.07 8.06 -52.49 -0.42 1.64 16 38 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.13 3.35 6.13 -52.48 -0.32 3.03 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -41.16 349.17 -10.55 -51.71 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.73 Total: 4.58 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -6.49 Total: -0.40 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.26 Total: -54.65 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.16 Total: -19.92 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -41.16 -10.55 -51.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730517436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.903 kcal (2) G-P(sol) polarization free energy of solvation -41.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds