Wall clock time and date at job start Tue Mar 31 2020 22:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47080 * 240.00161 * 3 2 1 5 5 H 1.48504 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47412 * 119.99664 * 3 2 1 7 7 C 1.39901 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99907 * 175.56176 * 7 2 1 9 9 C 1.41155 * 120.00303 * 355.56161 * 7 2 1 10 10 C 1.40870 * 120.16212 * 214.78021 * 9 7 2 11 11 C 1.36381 * 119.82498 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16716 * 0.02562 * 11 10 9 13 13 N 1.39235 * 119.82902 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00349 * 35.28813 * 13 12 11 15 15 O 1.21284 * 119.99937 * 355.70968 * 14 13 12 16 16 C 1.50697 * 120.00335 * 175.70665 * 14 13 12 17 17 N 1.46494 * 109.47319 * 179.97438 * 16 14 13 18 18 N 1.40162 * 126.01469 * 265.33844 * 17 16 14 19 19 H 0.96998 * 125.45286 * 359.97438 * 18 17 16 20 20 C 1.34332 * 109.08543 * 180.13848 * 18 17 16 21 21 C 1.38383 * 108.50267 * 359.57564 * 20 18 17 22 22 C 1.46811 * 134.77623 * 180.26346 * 21 20 18 23 23 O 1.22104 * 121.29787 * 359.97438 * 22 21 20 24 24 N 1.34411 * 117.40035 * 180.02562 * 22 21 20 25 25 C 1.31372 * 120.95062 * 359.92322 * 24 22 21 26 26 N 1.32034 * 123.74425 * 0.06214 * 25 24 22 27 27 C 1.32384 * 121.66657 * 359.97438 * 26 25 24 28 28 C 1.39478 * 120.33347 * 0.25056 * 12 11 10 29 29 C 1.36370 * 120.17176 * 359.44382 * 28 12 11 30 30 H 0.97000 * 120.00305 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.08895 * 359.97438 * 10 9 7 32 32 H 1.07993 * 119.91504 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99900 * 215.28292 * 13 12 11 34 34 H 1.09004 * 109.46995 * 59.99469 * 16 14 13 35 35 H 1.09001 * 109.47545 * 300.00687 * 16 14 13 36 36 H 1.08004 * 125.74441 * 179.84410 * 20 18 17 37 37 H 1.08000 * 118.12835 * 180.02562 * 25 24 22 38 38 H 1.08008 * 119.91439 * 179.72944 * 28 12 11 39 39 H 1.08004 * 120.08957 * 180.25388 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3057 -2.4322 0.0957 10 6 1.8651 -3.5179 0.7976 11 6 1.1805 -4.6943 0.8847 12 6 -0.0700 -4.8240 0.2807 13 7 -0.7625 -6.0283 0.3737 14 6 -0.6808 -6.7677 1.4975 15 8 0.0564 -6.4240 2.3972 16 6 -1.5053 -8.0215 1.6363 17 7 -1.2390 -8.6396 2.9375 18 7 -0.3095 -9.6574 3.1916 19 1 0.2667 -10.0711 2.5300 20 6 -0.3470 -9.9705 4.4973 21 6 -1.2860 -9.1637 5.1156 22 6 -1.7783 -9.0171 6.4909 23 8 -1.3412 -9.7076 7.3982 24 7 -2.7298 -8.0938 6.7122 25 6 -3.1948 -7.3543 5.7310 26 7 -2.7821 -7.4509 4.4806 27 6 -1.8497 -8.3194 4.1216 28 6 -0.6277 -3.7552 -0.4208 29 6 0.0421 -2.5707 -0.5113 30 1 -0.4850 0.8400 -0.0004 31 1 2.8338 -3.4194 1.2647 32 1 1.6078 -5.5275 1.4228 33 1 -1.3039 -6.3351 -0.3704 34 1 -1.2414 -8.7196 0.8419 35 1 -2.5635 -7.7705 1.5626 36 1 0.2573 -10.7221 4.9835 37 1 -3.9587 -6.6260 5.9602 38 1 -1.5945 -3.8644 -0.8896 39 1 -0.3928 -1.7426 -1.0514 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730517436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:36 Heat of formation + Delta-G solvation = 67.795631 kcal Electronic energy + Delta-G solvation = -27574.855810 eV Core-core repulsion = 23484.654440 eV Total energy + Delta-G solvation = -4090.201370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.35027 -41.29261 -40.26404 -39.10620 -38.11911 -36.26747 -35.07231 -34.70858 -33.47176 -31.63415 -31.53663 -31.03265 -29.16810 -26.68159 -26.13765 -24.39795 -23.67391 -22.93549 -22.12748 -21.41629 -20.32661 -19.52751 -19.31368 -18.67258 -18.13825 -17.65767 -17.14278 -17.00273 -16.91495 -16.56985 -15.98527 -15.74906 -15.57867 -15.39134 -14.97319 -14.88606 -14.84886 -14.46035 -14.06104 -13.72193 -13.66732 -13.46930 -13.26146 -12.87559 -12.78845 -12.52363 -12.40527 -11.90516 -11.60706 -11.42323 -11.25954 -11.04253 -10.93042 -10.74540 -10.48428 -9.79776 -9.49453 -9.14470 -8.77557 -8.53667 -6.36681 -0.77766 -0.26071 0.64715 0.74387 1.10930 1.26669 1.37741 1.40675 1.48982 1.63532 2.00405 2.19721 2.23283 2.77735 3.01080 3.08987 3.19173 3.53236 3.63954 3.67507 3.69704 3.95440 3.97048 4.08235 4.16214 4.37604 4.47321 4.82043 4.90660 5.05799 5.09590 5.10975 5.29003 5.39171 5.52455 5.66004 5.85327 5.90823 5.98435 6.09956 6.30340 6.36630 6.58639 6.66359 6.93913 6.96438 7.03252 7.26382 7.59318 8.38538 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.002398 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.612148 B =11671.365471 C =12242.657358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.068 3.932 10 C -0.226 4.226 11 C -0.093 4.093 12 C 0.021 3.979 13 N -0.631 5.631 14 C 0.475 3.525 15 O -0.567 6.567 16 C 0.125 3.875 17 N -0.351 5.351 18 N -0.380 5.380 19 H 0.487 0.513 20 C 0.304 3.696 21 C -0.428 4.428 22 C 0.543 3.457 23 O -0.581 6.581 24 N -0.687 5.687 25 C 0.424 3.576 26 N -0.644 5.644 27 C 0.454 3.546 28 C -0.115 4.115 29 C -0.162 4.162 30 H 0.285 0.715 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.425 0.575 34 H 0.194 0.806 35 H 0.166 0.834 36 H 0.273 0.727 37 H 0.218 0.782 38 H 0.130 0.870 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -20.866 -6.480 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.066 3.934 10 C -0.246 4.246 11 C -0.113 4.113 12 C -0.072 4.072 13 N -0.277 5.277 14 C 0.261 3.739 15 O -0.445 6.445 16 C 0.003 3.997 17 N -0.145 5.145 18 N -0.089 5.089 19 H 0.343 0.657 20 C 0.147 3.853 21 C -0.446 4.446 22 C 0.333 3.667 23 O -0.464 6.464 24 N -0.434 5.434 25 C 0.133 3.867 26 N -0.383 5.383 27 C 0.202 3.798 28 C -0.135 4.135 29 C -0.182 4.182 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.264 0.736 34 H 0.211 0.789 35 H 0.184 0.816 36 H 0.288 0.712 37 H 0.235 0.765 38 H 0.147 0.853 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.894 -20.347 -5.645 21.471 hybrid contribution 1.028 0.640 -0.437 1.287 sum -2.865 -19.707 -6.082 20.822 Atomic orbital electron populations 1.69803 1.08482 1.30076 1.38313 1.26702 0.95819 1.04223 0.91617 0.85195 0.78573 0.75779 0.79802 1.18089 1.19218 1.19242 1.19713 0.94822 0.91487 1.46986 0.91069 1.18037 0.93454 0.92595 0.89327 1.20921 1.01661 0.95862 1.06185 1.20458 0.93866 0.97195 0.99772 1.17191 0.93286 0.87511 1.09255 1.42695 1.48302 1.19449 1.17240 1.21683 0.83559 0.86918 0.81745 1.90801 1.40866 1.71707 1.41153 1.22278 1.03407 0.92668 0.81387 1.46123 1.30932 1.30160 1.07246 1.44286 1.29450 1.24784 1.10411 0.65743 1.23883 0.89222 0.91876 0.80353 1.22095 1.12392 1.10672 0.99490 1.18607 0.80753 0.81819 0.85531 1.90705 1.60326 1.47250 1.48152 1.69614 1.21301 1.15962 1.36476 1.25058 0.90572 0.89962 0.81080 1.67330 1.21505 1.27429 1.22020 1.18673 0.88574 0.88483 0.84098 1.20593 0.99320 0.91980 1.01563 1.21199 0.97441 0.96733 1.02833 0.90418 0.89135 0.87355 0.73617 0.78887 0.81625 0.71205 0.76548 0.85258 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.57 10.60 21.82 0.23 -43.34 16 2 C 0.03 1.45 5.42 85.24 0.46 1.91 16 3 Si 0.99 38.70 29.56 68.60 2.03 40.72 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.50 -26.95 9.02 23.39 0.21 -26.73 16 8 H 0.07 3.72 7.85 -2.91 -0.02 3.69 16 9 C 0.07 3.64 5.55 -21.27 -0.12 3.52 16 10 C -0.23 -11.27 9.74 22.48 0.22 -11.05 16 11 C -0.09 -4.06 8.61 22.14 0.19 -3.87 16 12 C 0.02 0.79 6.31 38.56 0.24 1.04 16 13 N -0.63 -14.66 5.30 -303.12 -1.61 -16.26 16 14 C 0.47 10.57 7.73 87.66 0.68 11.25 16 15 O -0.57 -19.77 13.85 -3.04 -0.04 -19.81 16 16 C 0.12 0.99 6.94 85.63 0.59 1.58 16 17 N -0.35 -4.62 3.16 -347.86 -1.10 -5.72 16 18 N -0.38 -1.49 7.14 -56.06 -0.40 -1.89 16 19 H 0.49 -3.37 8.96 -213.28 -1.91 -5.28 16 20 C 0.30 2.74 12.05 84.35 1.02 3.75 16 21 C -0.43 -10.49 6.37 -20.05 -0.13 -10.61 16 22 C 0.54 19.76 8.00 86.54 0.69 20.46 16 23 O -0.58 -24.41 18.03 -5.66 -0.10 -24.52 16 24 N -0.69 -25.19 10.50 -319.72 -3.36 -28.55 16 25 C 0.42 12.66 12.18 180.94 2.20 14.87 16 26 N -0.64 -18.47 10.39 -197.26 -2.05 -20.52 16 27 C 0.45 10.95 8.09 134.47 1.09 12.04 16 28 C -0.11 -4.61 9.90 22.13 0.22 -4.39 16 29 C -0.16 -8.02 8.61 22.48 0.19 -7.83 16 30 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 31 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 32 H 0.11 4.59 6.22 -2.91 -0.02 4.57 16 33 H 0.43 5.42 8.82 -92.71 -0.82 4.60 16 34 H 0.19 -1.02 8.14 -2.38 -0.02 -1.04 16 35 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.27 -0.36 8.06 -2.91 -0.02 -0.38 16 37 H 0.22 4.81 8.06 -2.91 -0.02 4.78 16 38 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.12 6.12 6.13 -2.91 -0.02 6.11 16 Total: -1.00 -102.49 349.17 -0.20 -102.70 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -1.57 Total: 11.25 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 7.76 Total: 5.92 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -8.28 Total: -116.27 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.14 Total: -44.32 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -102.49 -0.20 -102.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730517436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.491 kcal (2) G-P(sol) polarization free energy of solvation -102.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds