Wall clock time and date at job start Tue Mar 31 2020 22:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48497 * 109.46805 * 179.72502 * 3 2 1 5 5 H 1.48493 * 109.46852 * 299.72747 * 3 2 1 6 6 H 1.48500 * 109.46777 * 59.72582 * 3 2 1 7 7 C 1.37880 * 119.99897 * 179.72515 * 2 1 3 8 8 H 1.08000 * 119.99670 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00282 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99724 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99919 * 180.02562 * 11 10 9 14 14 O 1.45207 * 109.47265 * 179.97438 * 13 11 10 15 15 C 1.34228 * 116.99958 * 179.97438 * 14 13 11 16 16 O 1.20823 * 120.00260 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99719 * 179.97438 * 15 14 13 18 18 H 1.09004 * 115.54593 * 34.41653 * 17 15 14 19 19 C 1.52995 * 117.49716 * 248.74801 * 17 15 14 20 20 C 1.52999 * 117.49711 * 180.08692 * 17 15 14 21 21 H 1.08998 * 117.49737 * 214.97708 * 20 17 15 22 22 C 1.50703 * 117.49771 * 0.02562 * 20 17 15 23 23 C 1.38410 * 120.02421 * 266.69431 * 22 20 17 24 24 F 1.35099 * 120.01549 * 359.97438 * 23 22 20 25 25 C 1.38481 * 119.97503 * 179.70369 * 23 22 20 26 26 C 1.38210 * 120.02134 * 0.59495 * 25 23 22 27 27 C 1.38210 * 120.04982 * 359.67929 * 26 25 23 28 28 C 1.38416 * 120.02240 * 86.97068 * 22 20 17 29 29 F 1.35102 * 120.01640 * 359.97438 * 28 22 20 30 30 H 0.97004 * 120.00258 * 0.27200 * 1 2 3 31 31 H 1.09003 * 109.46703 * 300.00211 * 9 7 2 32 32 H 1.08998 * 109.46999 * 59.99790 * 9 7 2 33 33 H 0.96992 * 120.00038 * 359.97438 * 10 9 7 34 34 H 1.09010 * 109.46945 * 299.99382 * 13 11 10 35 35 H 1.08998 * 109.47377 * 59.99664 * 13 11 10 36 36 H 1.08998 * 117.49977 * 0.02562 * 19 17 15 37 37 H 1.08999 * 117.49579 * 145.00150 * 19 17 15 38 38 H 1.07994 * 119.98992 * 180.32236 * 25 23 22 39 39 H 1.08003 * 119.97624 * 179.70154 * 26 25 23 40 40 H 1.08001 * 119.98889 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0067 5 1 1.8954 2.3935 -1.2158 6 1 1.8853 2.3993 1.2092 7 6 2.0045 -1.1941 0.0057 8 1 3.0845 -1.1940 0.0053 9 6 1.2510 -2.4992 0.0114 10 7 2.2031 -3.6127 0.0162 11 6 1.7538 -4.8834 0.0213 12 8 0.5614 -5.1049 0.0222 13 6 2.7331 -6.0287 0.0268 14 8 2.0070 -7.2863 0.0322 15 6 2.7381 -8.4120 0.0370 16 8 3.9447 -8.3488 0.0363 17 6 2.0539 -9.7547 0.0433 18 1 1.1174 -9.8077 -0.5120 19 6 2.1720 -10.6017 1.3119 20 6 2.9425 -11.0003 0.0507 21 1 2.5903 -11.8729 -0.4994 22 6 4.4348 -10.7904 0.0517 23 6 5.1319 -10.7683 -1.1438 24 9 4.4748 -10.9354 -2.3124 25 6 6.5023 -10.5693 -1.1421 26 6 7.1757 -10.4050 0.0536 27 6 6.4814 -10.4326 1.2483 28 6 5.1101 -10.6253 1.2486 29 9 4.4317 -10.6517 2.4166 30 1 -0.4851 0.8400 -0.0040 31 1 0.6240 -2.5528 0.9014 32 1 0.6247 -2.5610 -0.8785 33 1 3.1566 -3.4354 0.0151 34 1 3.3604 -5.9748 -0.8631 35 1 3.3591 -5.9673 0.9170 36 1 2.7441 -10.1876 2.1421 37 1 1.3132 -11.2121 1.5912 38 1 7.0457 -10.5468 -2.0751 39 1 8.2452 -10.2546 0.0544 40 1 7.0086 -10.3037 2.1821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734913530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:00 Heat of formation + Delta-G solvation = -167.319940 kcal Electronic energy + Delta-G solvation = -28544.170943 eV Core-core repulsion = 23960.792259 eV Total energy + Delta-G solvation = -4583.378684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.19213 -49.96795 -41.95494 -40.60018 -39.79616 -38.23306 -37.07140 -36.21030 -34.44044 -31.88518 -31.19893 -30.90765 -28.71760 -26.19607 -24.90185 -24.49158 -23.76159 -22.56692 -21.68735 -21.31736 -19.35620 -19.15142 -18.99987 -18.19625 -17.87156 -17.78646 -17.41969 -16.99301 -16.92386 -16.54247 -16.43244 -16.33190 -16.29135 -15.83775 -15.74094 -15.50295 -14.80898 -14.49711 -14.41685 -14.06049 -14.00104 -13.70519 -13.63406 -13.29012 -13.05121 -12.92718 -12.77868 -12.76698 -12.23722 -12.13051 -11.94236 -11.76133 -11.65936 -11.51385 -11.48193 -10.95396 -10.84720 -9.96352 -9.67597 -9.64694 -8.31135 -6.47889 0.03154 0.05647 0.93882 1.18123 1.43873 1.44291 1.51107 1.58141 2.30409 2.36077 2.52191 2.64285 2.94462 3.04244 3.25654 3.48382 3.52241 3.57128 3.62799 3.75556 3.92256 3.97399 4.00395 4.03559 4.23240 4.29122 4.66041 4.72693 4.88872 4.90463 4.93322 5.04703 5.08540 5.14886 5.19436 5.20927 5.26104 5.39404 5.60703 5.80191 5.85124 6.54403 6.61239 6.75338 7.18161 7.32760 8.81310 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.002212 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.515029 B =12653.411087 C =13138.225416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.063 3.937 14 O -0.346 6.346 15 C 0.485 3.515 16 O -0.510 6.510 17 C -0.168 4.168 18 H 0.158 0.842 19 C -0.140 4.140 20 C -0.087 4.087 21 H 0.155 0.845 22 C -0.116 4.116 23 C 0.116 3.884 24 F -0.141 7.141 25 C -0.163 4.163 26 C -0.060 4.060 27 C -0.162 4.162 28 C 0.119 3.881 29 F -0.132 7.132 30 H 0.269 0.731 31 H -0.007 1.007 32 H -0.008 1.008 33 H 0.412 0.588 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.492 -26.795 1.112 31.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.014 4.014 14 O -0.262 6.262 15 C 0.329 3.671 16 O -0.398 6.398 17 C -0.187 4.187 18 H 0.175 0.825 19 C -0.176 4.176 20 C -0.104 4.104 21 H 0.173 0.827 22 C -0.118 4.118 23 C 0.096 3.904 24 F -0.120 7.120 25 C -0.181 4.181 26 C -0.078 4.078 27 C -0.180 4.180 28 C 0.100 3.900 29 F -0.111 7.111 30 H 0.078 0.922 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.249 0.751 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.192 0.808 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 15.802 -26.776 1.116 31.111 hybrid contribution -0.188 1.277 -0.197 1.305 sum 15.614 -25.499 0.920 29.914 Atomic orbital electron populations 1.70139 1.08276 1.28604 1.49876 1.26068 0.95784 1.03919 0.93810 0.85092 0.79105 0.77242 0.77668 1.17570 1.20475 1.20475 1.21633 0.94421 0.90338 1.52996 0.89576 1.18643 0.88578 0.83812 0.94592 1.46037 1.11721 1.04688 1.72484 1.20681 0.89280 0.84736 0.76806 1.90685 1.18919 1.85312 1.51461 1.22699 0.92561 0.79277 1.06844 1.86549 1.41400 1.14476 1.83736 1.23155 0.86040 0.86066 0.71865 1.90669 1.15498 1.87601 1.46051 1.21990 1.03178 0.84852 1.08652 0.82480 1.23981 1.03488 0.99408 0.90725 1.21154 0.88082 0.97188 1.04009 0.82724 1.19000 0.95069 1.05884 0.91871 1.17346 0.91017 1.01931 0.80060 1.91481 1.81646 1.92857 1.45998 1.21482 0.91751 1.03270 1.01623 1.21195 1.01892 0.95113 0.89614 1.21489 0.91655 1.03256 1.01645 1.17320 0.90722 1.01983 0.80016 1.91318 1.79509 1.93867 1.46364 0.92175 0.98946 0.98997 0.75136 0.86086 0.86019 0.86349 0.83688 0.82386 0.80764 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.99 41.92 29.54 68.60 2.03 43.94 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.56 -29.87 9.28 25.60 0.24 -29.64 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.50 5.43 85.63 0.46 14.96 16 10 N -0.70 -29.27 5.55 -466.79 -2.59 -31.86 16 11 C 0.50 20.54 7.91 87.66 0.69 21.24 16 12 O -0.58 -30.03 16.50 15.77 0.26 -29.77 16 13 C 0.06 1.90 5.94 71.23 0.42 2.32 16 14 O -0.35 -11.20 9.76 -45.04 -0.44 -11.64 16 15 C 0.48 13.26 7.72 71.24 0.55 13.80 16 16 O -0.51 -14.51 12.95 21.97 0.28 -14.23 16 17 C -0.17 -3.41 6.30 -11.54 -0.07 -3.49 16 18 H 0.16 2.69 8.14 -2.38 -0.02 2.67 16 19 C -0.14 -2.25 9.15 30.62 0.28 -1.97 16 20 C -0.09 -1.50 5.64 -11.51 -0.06 -1.56 16 21 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.12 -2.34 3.32 -19.78 -0.07 -2.41 16 23 C 0.12 2.32 6.85 22.37 0.15 2.48 16 24 F -0.14 -3.10 16.80 44.97 0.76 -2.34 16 25 C -0.16 -2.46 10.03 22.32 0.22 -2.24 16 26 C -0.06 -0.73 10.04 22.26 0.22 -0.50 16 27 C -0.16 -2.40 10.03 22.32 0.22 -2.17 16 28 C 0.12 2.30 6.34 22.37 0.14 2.45 16 29 F -0.13 -2.64 13.45 44.97 0.60 -2.03 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 31 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 34 H 0.12 3.08 8.13 -2.38 -0.02 3.06 16 35 H 0.12 3.07 8.13 -2.39 -0.02 3.05 16 36 H 0.12 2.25 5.19 -2.39 -0.01 2.23 16 37 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -76.96 359.14 5.40 -71.57 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.34 Total: 17.91 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 3.87 Total: 13.94 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.30 Total: -87.36 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: 0.11 Total: -55.63 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 1.36 Total: -4.38 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -76.96 5.40 -71.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734913530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.754 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds