Wall clock time and date at job start Tue Mar 31 2020 22:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47273 * 270.00236 * 3 2 1 5 5 H 1.48503 * 109.46915 * 30.00016 * 3 2 1 6 6 H 1.48498 * 109.47497 * 149.99760 * 3 2 1 7 7 C 1.37875 * 120.00635 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00562 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99402 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46739 * 180.02562 * 9 7 2 11 11 C 1.34785 * 120.00047 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99551 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00201 * 179.97438 * 11 10 9 14 14 O 1.45205 * 109.47243 * 179.97438 * 13 11 10 15 15 C 1.34224 * 116.99778 * 180.02562 * 14 13 11 16 16 O 1.20817 * 120.00463 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99635 * 179.72718 * 15 14 13 18 18 H 1.08995 * 115.55023 * 325.85914 * 17 15 14 19 19 C 1.53001 * 117.49969 * 111.52560 * 17 15 14 20 20 C 1.53001 * 117.50030 * 180.18498 * 17 15 14 21 21 H 1.08999 * 117.49875 * 145.01763 * 20 17 15 22 22 C 1.50701 * 117.49354 * 0.02562 * 20 17 15 23 23 C 1.38418 * 120.02210 * 273.22642 * 22 20 17 24 24 F 1.35093 * 120.01694 * 359.97438 * 23 22 20 25 25 C 1.38481 * 119.97191 * 179.75299 * 23 22 20 26 26 C 1.38205 * 120.02285 * 0.50425 * 25 23 22 27 27 C 1.38214 * 120.05288 * 359.76600 * 26 25 23 28 28 C 1.38417 * 120.02573 * 93.50760 * 22 20 17 29 29 F 1.35101 * 120.01355 * 359.97063 * 28 22 20 30 30 H 0.96997 * 120.00140 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47134 * 60.00690 * 9 7 2 32 32 H 1.09002 * 109.47430 * 300.00306 * 9 7 2 33 33 H 0.96993 * 120.00573 * 359.97438 * 10 9 7 34 34 H 1.09003 * 109.47188 * 60.00311 * 13 11 10 35 35 H 1.09002 * 109.47175 * 299.99901 * 13 11 10 36 36 H 1.08998 * 117.50194 * 214.97958 * 19 17 15 37 37 H 1.09002 * 117.49712 * 359.97438 * 19 17 15 38 38 H 1.07995 * 119.98643 * 180.23124 * 25 23 22 39 39 H 1.08004 * 119.97331 * 179.75063 * 26 25 23 40 40 H 1.07997 * 119.98258 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6125 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0011 13 6 2.7333 -6.0287 -0.0016 14 8 2.0074 -7.2862 -0.0015 15 6 2.7385 -8.4119 -0.0015 16 8 3.9451 -8.3486 -0.0020 17 6 2.0544 -9.7547 0.0049 18 1 1.1181 -9.8026 0.5607 19 6 2.1723 -10.6136 -1.2558 20 6 2.9430 -11.0002 0.0090 21 1 2.5910 -11.8677 0.5673 22 6 4.4353 -10.7903 0.0070 23 6 5.1107 -10.6316 -1.1907 24 9 4.4326 -10.6654 -2.3586 25 6 6.4813 -10.4336 -1.1911 26 6 7.1761 -10.4048 0.0033 27 6 6.5035 -10.5687 1.1995 28 6 5.1323 -10.7617 1.2025 29 9 4.4750 -10.9215 2.3720 30 1 -0.4850 0.8400 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 3.1568 -3.4353 -0.0009 34 1 3.3600 -5.9713 0.8884 35 1 3.3599 -5.9705 -0.8917 36 1 1.3137 -11.2269 -1.5291 37 1 2.7444 -10.2072 -2.0899 38 1 7.0080 -10.3061 -2.1252 39 1 8.2456 -10.2544 0.0018 40 1 7.0476 -10.5464 2.1321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734913532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:02 Heat of formation + Delta-G solvation = -167.246113 kcal Electronic energy + Delta-G solvation = -28543.768310 eV Core-core repulsion = 23960.392827 eV Total energy + Delta-G solvation = -4583.375483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.19567 -49.96807 -41.95559 -40.59903 -39.79594 -38.23359 -37.07170 -36.20965 -34.44042 -31.88522 -31.19953 -30.90787 -28.71726 -26.19590 -24.90199 -24.49032 -23.76203 -22.56768 -21.68739 -21.31782 -19.35666 -19.15066 -19.00088 -18.19700 -17.87134 -17.78460 -17.41898 -16.99302 -16.92428 -16.54304 -16.43409 -16.33165 -16.28922 -15.84024 -15.74103 -15.50453 -14.80945 -14.49777 -14.41455 -14.05360 -14.00119 -13.70445 -13.63456 -13.29081 -13.05006 -12.95217 -12.78055 -12.72752 -12.24308 -12.12962 -11.94232 -11.76002 -11.65970 -11.52514 -11.50113 -10.95396 -10.83341 -9.96313 -9.67618 -9.64645 -8.30929 -6.47859 0.03048 0.05675 0.93870 1.18207 1.43807 1.45516 1.51081 1.57090 2.30439 2.36013 2.52254 2.64424 2.94440 3.04330 3.25616 3.48359 3.52292 3.57072 3.62801 3.75548 3.92231 3.97353 4.00385 4.03514 4.23294 4.29128 4.66029 4.72687 4.88897 4.90461 4.93319 5.04649 5.08535 5.14941 5.19465 5.20923 5.26110 5.39266 5.60703 5.80162 5.85121 6.54408 6.61046 6.75318 7.18154 7.32786 8.81300 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.002212 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.574059 B =12653.812762 C =13139.746879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.063 3.937 14 O -0.346 6.346 15 C 0.485 3.515 16 O -0.510 6.510 17 C -0.168 4.168 18 H 0.158 0.842 19 C -0.140 4.140 20 C -0.087 4.087 21 H 0.155 0.845 22 C -0.117 4.117 23 C 0.119 3.881 24 F -0.132 7.132 25 C -0.162 4.162 26 C -0.060 4.060 27 C -0.163 4.163 28 C 0.116 3.884 29 F -0.141 7.141 30 H 0.269 0.731 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.412 0.588 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.488 -26.790 -0.956 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.014 4.014 14 O -0.262 6.262 15 C 0.329 3.671 16 O -0.398 6.398 17 C -0.187 4.187 18 H 0.175 0.825 19 C -0.176 4.176 20 C -0.104 4.104 21 H 0.173 0.827 22 C -0.118 4.118 23 C 0.100 3.900 24 F -0.111 7.111 25 C -0.180 4.180 26 C -0.078 4.078 27 C -0.181 4.181 28 C 0.096 3.904 29 F -0.120 7.120 30 H 0.078 0.922 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.249 0.751 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.177 0.823 39 H 0.192 0.808 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 15.795 -26.768 -0.950 31.095 hybrid contribution -0.177 1.272 0.173 1.296 sum 15.618 -25.496 -0.777 29.909 Atomic orbital electron populations 1.70130 1.08279 1.28672 1.49803 1.26064 0.95779 1.03914 0.93788 0.85142 0.78494 0.76887 0.78611 1.19589 1.20995 1.17861 1.21604 0.94424 0.90354 1.53126 0.89573 1.18638 0.88568 0.83795 0.94583 1.46040 1.11722 1.04687 1.72485 1.20685 0.89282 0.84737 0.76804 1.90687 1.18918 1.85315 1.51463 1.22697 0.92560 0.79275 1.06846 1.86548 1.41400 1.14476 1.83737 1.23152 0.86038 0.86067 0.71866 1.90668 1.15499 1.87599 1.46050 1.21990 1.03180 0.84779 1.08729 0.82488 1.23987 1.03485 0.99316 0.90824 1.21153 0.88083 0.97209 1.03987 0.82737 1.19002 0.95069 1.05903 0.91857 1.17320 0.90732 1.01961 0.80004 1.91313 1.79514 1.93849 1.46378 1.21487 0.91672 1.03230 1.01649 1.21195 1.01894 0.95107 0.89618 1.21481 0.91730 1.03301 1.01621 1.17346 0.91006 1.01978 0.80037 1.91481 1.81634 1.92946 1.45921 0.92167 0.98965 0.98994 0.75135 0.86096 0.86006 0.83690 0.86325 0.82317 0.80764 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 41.90 29.54 68.60 2.03 43.92 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.56 -29.95 9.28 25.60 0.24 -29.72 16 8 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.53 5.43 85.63 0.46 14.99 16 10 N -0.70 -29.29 5.55 -466.77 -2.59 -31.88 16 11 C 0.50 20.55 7.91 87.65 0.69 21.24 16 12 O -0.58 -30.04 16.50 15.75 0.26 -29.78 16 13 C 0.06 1.90 5.94 71.23 0.42 2.32 16 14 O -0.35 -11.20 9.76 -45.00 -0.44 -11.64 16 15 C 0.48 13.26 7.72 71.24 0.55 13.81 16 16 O -0.51 -14.51 12.95 21.99 0.28 -14.23 16 17 C -0.17 -3.42 6.30 -11.54 -0.07 -3.49 16 18 H 0.16 2.69 8.14 -2.39 -0.02 2.67 16 19 C -0.14 -2.25 9.16 30.62 0.28 -1.97 16 20 C -0.09 -1.50 5.64 -11.51 -0.06 -1.56 16 21 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.12 -2.35 3.32 -19.78 -0.07 -2.41 16 23 C 0.12 2.31 6.32 22.37 0.14 2.45 16 24 F -0.13 -2.64 13.44 44.97 0.60 -2.03 16 25 C -0.16 -2.40 10.03 22.32 0.22 -2.18 16 26 C -0.06 -0.73 10.04 22.26 0.22 -0.50 16 27 C -0.16 -2.46 10.03 22.32 0.22 -2.24 16 28 C 0.12 2.32 6.86 22.37 0.15 2.47 16 29 F -0.14 -3.10 16.80 44.97 0.76 -2.34 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 34 H 0.12 3.08 8.13 -2.39 -0.02 3.06 16 35 H 0.12 3.07 8.13 -2.39 -0.02 3.05 16 36 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.12 2.25 5.18 -2.39 -0.01 2.24 16 38 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -76.96 359.13 5.40 -71.56 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.34 Total: 18.01 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 3.87 Total: 13.92 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -2.30 Total: -87.40 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: 0.11 Total: -55.64 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 1.36 Total: -4.38 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -76.96 5.40 -71.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734913532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.687 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds