Wall clock time and date at job start Tue Mar 31 2020 22:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47512 * 270.00621 * 3 2 1 5 5 H 1.48502 * 109.46900 * 30.00396 * 3 2 1 6 6 H 1.48498 * 109.47072 * 150.00001 * 3 2 1 7 7 C 1.38812 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99448 * 163.07203 * 7 2 1 9 9 N 1.36932 * 120.00428 * 343.06451 * 7 2 1 10 10 C 1.46924 * 120.63074 * 331.85702 * 9 7 2 11 11 C 1.53196 * 108.77611 * 233.58136 * 10 9 7 12 12 C 1.53038 * 109.31089 * 305.36868 * 11 10 9 13 13 N 1.46900 * 109.45807 * 181.38469 * 12 11 10 14 14 C 1.46907 * 110.99988 * 154.99665 * 13 12 11 15 15 C 1.50697 * 109.47248 * 179.97438 * 14 13 12 16 16 C 1.38229 * 119.99476 * 260.00468 * 15 14 13 17 17 C 1.38337 * 119.99218 * 179.97438 * 16 15 14 18 18 Cl 1.73594 * 120.01439 * 179.97438 * 17 16 15 19 19 C 1.38373 * 119.96789 * 359.97438 * 17 16 15 20 20 C 1.38194 * 119.98784 * 0.02562 * 19 17 16 21 21 C 1.38223 * 119.99464 * 79.72200 * 15 14 13 22 22 N 1.48022 * 119.98435 * 359.97438 * 21 15 14 23 23 O 1.21806 * 119.99944 * 180.02562 * 22 21 15 24 24 O 1.21799 * 120.00164 * 0.02562 * 22 21 15 25 25 C 1.53040 * 109.54211 * 61.36002 * 12 11 10 26 26 C 1.46928 * 120.63081 * 151.82847 * 9 7 2 27 27 H 0.97007 * 120.00507 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58680 * 113.79202 * 10 9 7 29 29 H 1.09001 * 109.70363 * 353.43793 * 10 9 7 30 30 H 1.08999 * 109.49747 * 185.41209 * 11 10 9 31 31 H 1.09001 * 109.49660 * 65.31456 * 11 10 9 32 32 H 1.09006 * 109.45599 * 301.35421 * 12 11 10 33 33 H 1.00901 * 110.99993 * 278.94955 * 13 12 11 34 34 H 1.08997 * 109.46746 * 299.99609 * 14 13 12 35 35 H 1.09001 * 109.47204 * 59.99678 * 14 13 12 36 36 H 1.08009 * 120.00666 * 359.94962 * 16 15 14 37 37 H 1.08000 * 120.00502 * 180.02562 * 19 17 16 38 38 H 1.08004 * 119.99055 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.49338 * 58.59025 * 25 12 11 40 40 H 1.09001 * 109.49470 * 178.68196 * 25 12 11 41 41 H 1.09000 * 109.58825 * 246.20681 * 26 9 7 42 42 H 1.09005 * 109.58446 * 6.48716 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3444 10 6 0.2261 -2.3409 1.2660 11 6 0.4974 -3.3208 2.4119 12 6 0.8120 -4.7020 1.8327 13 7 1.0402 -5.6522 2.9296 14 6 0.7600 -7.0289 2.5004 15 6 1.0052 -7.9730 3.6491 16 6 2.1859 -8.6888 3.7153 17 6 2.4112 -9.5550 4.7701 18 17 3.8934 -10.4547 4.8535 19 6 1.4544 -9.7039 5.7586 20 6 0.2744 -8.9878 5.6914 21 6 0.0520 -8.1186 4.6394 22 7 -1.2092 -7.3467 4.5715 23 8 -2.0492 -7.4745 5.4443 24 8 -1.4070 -6.5838 3.6429 25 6 2.0674 -4.6180 0.9615 26 6 1.8138 -3.6528 -0.2007 27 1 -0.4851 0.8401 0.0004 28 1 -0.6770 -2.6410 0.7346 29 1 0.0967 -1.3358 1.6677 30 1 -0.3832 -3.3862 3.0509 31 1 1.3472 -2.9697 2.9973 32 1 -0.0281 -5.0417 1.2269 33 1 1.9791 -5.5698 3.2899 34 1 -0.2796 -7.1057 2.1821 35 1 1.4148 -7.2908 1.6692 36 1 2.9323 -8.5721 2.9434 37 1 1.6298 -10.3797 6.5826 38 1 -0.4722 -9.1037 6.4631 39 1 2.9023 -4.2547 1.5606 40 1 2.3042 -5.6066 0.5683 41 1 1.0402 -4.0599 -0.8517 42 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740005801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:25 Heat of formation + Delta-G solvation = 29.337409 kcal Electronic energy + Delta-G solvation = -27132.494838 eV Core-core repulsion = 23141.733288 eV Total energy + Delta-G solvation = -3990.761550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.19619 -40.77313 -39.57920 -37.89455 -37.62007 -36.64102 -34.40777 -32.90372 -32.80764 -31.61947 -30.62329 -27.92291 -26.89749 -25.66950 -23.92959 -23.63346 -23.08225 -22.84016 -20.89090 -20.06006 -19.53350 -18.78153 -18.45646 -17.81681 -17.12840 -16.90662 -16.26732 -16.04228 -15.80898 -15.38591 -15.26703 -14.92346 -14.82303 -14.66043 -14.26910 -13.98403 -13.73489 -13.69758 -13.12700 -13.01258 -12.87823 -12.80846 -12.58548 -12.51094 -12.42595 -12.15935 -12.10504 -11.97312 -11.93592 -11.76619 -11.71342 -11.36686 -11.14633 -10.53066 -10.45454 -10.34575 -9.26541 -8.66440 -7.85643 -5.31202 -1.31426 -0.25103 0.20360 0.42237 0.78588 1.46515 1.48512 1.58053 2.01402 2.52383 3.03176 3.23912 3.28462 3.40200 3.62867 3.67124 3.73119 3.96047 4.03789 4.12572 4.23519 4.41716 4.45023 4.48942 4.57441 4.62846 4.75134 4.77167 4.81444 4.90500 5.00939 5.06022 5.07596 5.17993 5.32403 5.37270 5.44648 5.54750 5.66759 5.76296 6.05647 6.41100 6.48356 6.59341 7.16578 7.88585 8.40442 9.20879 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002622 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.879739 B =10677.091574 C =11838.922229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.108 4.108 12 C 0.117 3.883 13 N -0.674 5.674 14 C 0.082 3.918 15 C -0.007 4.007 16 C -0.103 4.103 17 C 0.013 3.987 18 Cl -0.031 7.031 19 C -0.100 4.100 20 C -0.042 4.042 21 C -0.042 4.042 22 N 0.030 4.970 23 O -0.197 6.197 24 O -0.148 6.148 25 C -0.144 4.144 26 C 0.143 3.857 27 H 0.249 0.751 28 H -0.006 1.006 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.173 0.827 37 H 0.187 0.813 38 H 0.175 0.825 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.012 0.988 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 -26.433 12.327 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.148 4.148 12 C 0.008 3.992 13 N -0.304 5.304 14 C -0.046 4.046 15 C -0.009 4.009 16 C -0.123 4.123 17 C -0.014 4.014 18 Cl -0.002 7.002 19 C -0.119 4.119 20 C -0.061 4.061 21 C -0.126 4.126 22 N 0.545 4.455 23 O -0.405 6.405 24 O -0.367 6.367 25 C -0.184 4.184 26 C 0.017 3.983 27 H 0.059 0.941 28 H 0.012 0.988 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.191 0.809 37 H 0.204 0.796 38 H 0.192 0.808 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.801 -26.680 12.678 30.312 hybrid contribution 0.416 1.324 -0.807 1.606 sum 7.217 -25.356 11.871 28.913 Atomic orbital electron populations 1.70196 1.06752 1.25830 1.55381 1.25828 0.96025 1.01603 1.01349 0.85292 0.78072 0.79582 0.77590 1.21032 1.21997 1.19476 1.19501 0.92802 0.86102 1.40931 0.91571 1.44332 1.35899 1.02440 1.50759 1.20539 0.87687 0.97410 0.88953 1.21891 1.00266 0.94883 0.97762 1.21160 0.96704 0.91317 0.90032 1.60464 1.32352 1.02771 1.34785 1.21271 1.03987 0.86672 0.92657 1.19753 0.91629 0.95299 0.94248 1.21226 0.96330 0.95344 0.99361 1.21424 0.89752 0.94387 0.95834 1.98446 1.31409 1.72450 1.97892 1.21400 0.90503 1.00294 0.99678 1.21265 0.98504 0.90953 0.95390 1.21242 0.86895 1.02054 1.02455 1.43852 1.02496 0.99685 0.99496 1.94492 1.40743 1.71765 1.33513 1.94611 1.84448 1.32191 1.25432 1.22532 0.98205 0.99433 0.98234 1.20987 0.97188 0.85979 0.94100 0.94146 0.98836 0.93118 0.92520 0.93594 0.91560 0.84022 0.88570 0.91523 0.80932 0.79564 0.80778 0.92321 0.90026 0.96963 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 11.19 21.65 0.24 -56.71 16 2 C -0.05 -3.01 4.92 84.86 0.42 -2.60 16 3 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.26 -14.73 9.58 84.03 0.81 -13.92 16 8 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -31.22 2.99 -699.10 -2.09 -33.32 16 10 C 0.18 9.10 5.30 86.36 0.46 9.55 16 11 C -0.11 -4.34 5.69 30.67 0.17 -4.17 16 12 C 0.12 3.78 2.43 44.94 0.11 3.89 16 13 N -0.67 -17.42 5.47 -495.42 -2.71 -20.13 16 14 C 0.08 1.72 4.62 85.55 0.40 2.12 16 15 C -0.01 -0.12 5.39 -19.87 -0.11 -0.23 16 16 C -0.10 -1.21 9.45 22.29 0.21 -1.00 16 17 C 0.01 0.13 6.32 22.33 0.14 0.27 16 18 Cl -0.03 -0.28 28.96 -2.72 -0.08 -0.36 16 19 C -0.10 -0.82 9.83 22.29 0.22 -0.60 16 20 C -0.04 -0.54 9.55 22.26 0.21 -0.33 16 21 C -0.04 -0.84 6.85 36.38 0.25 -0.59 16 22 N 0.03 0.83 4.45 -46.45 -0.21 0.62 16 23 O -0.20 -5.69 18.45 18.88 0.35 -5.34 16 24 O -0.15 -4.73 14.74 18.89 0.28 -4.45 16 25 C -0.14 -4.45 5.33 30.67 0.16 -4.28 16 26 C 0.14 5.86 6.52 86.36 0.56 6.42 16 27 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 2.29 7.80 -2.38 -0.02 2.27 16 33 H 0.34 7.94 8.47 -89.69 -0.76 7.18 16 34 H 0.10 2.40 5.81 -2.39 -0.01 2.38 16 35 H 0.07 1.11 7.27 -2.39 -0.02 1.10 16 36 H 0.17 1.39 8.04 -2.91 -0.02 1.37 16 37 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.17 1.76 7.61 -2.91 -0.02 1.74 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.08 1.96 7.42 -2.39 -0.02 1.95 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.05 2.14 7.93 -2.38 -0.02 2.12 16 Total: -1.00 -69.79 360.33 2.12 -67.67 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.30 Total: 9.79 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.01 Total: -5.46 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.76 Total: -109.53 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.63 Total: -9.79 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -69.79 2.12 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740005801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.007 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds