Wall clock time and date at job start Tue Mar 31 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48504 * 109.46960 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.47271 * 29.99720 * 3 2 1 6 6 H 1.48500 * 109.47599 * 150.00062 * 3 2 1 7 7 C 1.37879 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99774 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00126 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00189 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00316 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47712 * 180.02562 * 13 11 10 15 15 C 1.34226 * 117.00219 * 180.02562 * 14 13 11 16 16 O 1.20823 * 119.99909 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99921 * 180.02562 * 15 14 13 18 18 H 1.08995 * 115.56362 * 34.30842 * 17 15 14 19 19 C 1.53006 * 117.49412 * 248.62100 * 17 15 14 20 20 C 1.52999 * 117.49906 * 179.97438 * 17 15 14 21 21 H 1.09002 * 117.49803 * 214.97533 * 20 17 15 22 22 C 1.50700 * 117.51845 * 0.02562 * 20 17 15 23 23 C 1.38264 * 119.99730 * 59.88264 * 22 20 17 24 24 C 1.38212 * 120.06878 * 179.97438 * 23 22 20 25 25 C 1.38251 * 120.07226 * 0.02918 * 24 23 22 26 26 C 1.38377 * 120.00166 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.03497 * 180.02562 * 26 25 24 28 28 C 1.38361 * 120.00236 * 239.61049 * 22 20 17 29 29 F 1.35103 * 120.03645 * 359.97438 * 28 22 20 30 30 H 0.97006 * 119.99745 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47513 * 60.00412 * 9 7 2 32 32 H 1.09004 * 109.47569 * 300.00177 * 9 7 2 33 33 H 0.96998 * 119.99715 * 359.97438 * 10 9 7 34 34 H 1.09006 * 109.47071 * 59.99634 * 13 11 10 35 35 H 1.09003 * 109.47130 * 300.00495 * 13 11 10 36 36 H 1.09004 * 117.49624 * 145.02403 * 19 17 15 37 37 H 1.08992 * 117.49824 * 359.97438 * 19 17 15 38 38 H 1.07997 * 119.96636 * 0.02562 * 23 22 20 39 39 H 1.08000 * 119.96380 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00475 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8216 0.0001 12 8 6.1130 -1.8998 -0.0004 13 6 5.8272 -4.2423 0.0008 14 8 7.2793 -4.2424 0.0014 15 6 7.8886 -5.4384 0.0015 16 8 7.2305 -6.4517 0.0017 17 6 9.3935 -5.5173 0.0027 18 1 9.9053 -4.7310 0.5575 19 6 10.0740 -6.0480 -1.2608 20 6 10.0280 -6.9096 0.0034 21 1 10.9572 -7.0389 0.5583 22 6 9.1005 -8.0974 0.0023 23 6 8.2027 -8.2724 -1.0346 24 6 7.3518 -9.3615 -1.0373 25 6 7.3961 -10.2779 -0.0031 26 6 8.2934 -10.1056 1.0361 27 9 8.3377 -11.0009 2.0468 28 6 9.1513 -9.0158 1.0359 29 9 10.0324 -8.8487 2.0463 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8745 -0.6808 -0.8905 33 1 3.3695 -3.3125 0.0009 34 1 5.4638 -4.7567 -0.8889 35 1 5.4639 -4.7558 0.8911 36 1 11.0336 -5.6109 -1.5371 37 1 9.4332 -6.3404 -2.0925 38 1 8.1669 -7.5578 -1.8435 39 1 6.6509 -9.4964 -1.8479 40 1 6.7310 -11.1288 -0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745241444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:38 Heat of formation + Delta-G solvation = -145.240746 kcal Electronic energy + Delta-G solvation = -28194.139547 eV Core-core repulsion = 23611.718289 eV Total energy + Delta-G solvation = -4582.421258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.67333 -48.75563 -41.23888 -39.62814 -38.78957 -37.29499 -36.15055 -34.42403 -32.47245 -31.15516 -30.54881 -29.66808 -27.44149 -25.25531 -24.64023 -23.07550 -22.19461 -21.50767 -20.47669 -20.16492 -18.67416 -17.98923 -17.58941 -17.38808 -17.08132 -16.75539 -16.52558 -16.39995 -15.82505 -15.38792 -15.21880 -15.15309 -15.05178 -14.74332 -14.51971 -14.31032 -13.85194 -13.25661 -13.25145 -13.12879 -12.91768 -12.72034 -12.49814 -12.40591 -12.15636 -11.92596 -11.56925 -11.28658 -11.13326 -11.10400 -10.88376 -10.79101 -10.66984 -10.03307 -9.58214 -9.40939 -9.00679 -8.85296 -8.78730 -8.31851 -6.27354 -4.30662 0.62784 0.72955 1.81815 2.18706 2.96239 2.99260 3.22674 3.29679 3.32326 3.37392 3.53475 3.74681 3.94091 4.10861 4.15867 4.24146 4.27947 4.39458 4.52840 4.60855 4.76855 4.82040 4.98892 5.06659 5.10246 5.16049 5.16664 5.27244 5.38277 5.44607 5.53530 5.67052 5.83259 6.00055 6.18509 6.48257 6.68858 6.96776 7.04277 7.27819 7.51695 8.00485 8.36936 8.63485 8.75463 9.31576 10.84382 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002134 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.825403 B =13115.533449 C =13846.299181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.501 3.499 12 O -0.536 6.536 13 C 0.050 3.950 14 O -0.324 6.324 15 C 0.486 3.514 16 O -0.495 6.495 17 C -0.151 4.151 18 H 0.146 0.854 19 C -0.135 4.135 20 C -0.086 4.086 21 H 0.134 0.866 22 C -0.060 4.060 23 C -0.043 4.043 24 C -0.104 4.104 25 C -0.123 4.123 26 C 0.057 3.943 27 F -0.133 7.133 28 C 0.076 3.924 29 F -0.130 7.130 30 H 0.269 0.731 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.399 0.601 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.601 -20.360 -3.186 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.414 6.414 13 C -0.027 4.027 14 O -0.239 6.239 15 C 0.329 3.671 16 O -0.383 6.383 17 C -0.170 4.170 18 H 0.164 0.836 19 C -0.171 4.171 20 C -0.104 4.104 21 H 0.152 0.848 22 C -0.061 4.061 23 C -0.061 4.061 24 C -0.122 4.122 25 C -0.141 4.141 26 C 0.037 3.963 27 F -0.111 7.111 28 C 0.056 3.944 29 F -0.109 7.109 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.233 0.767 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 20.780 -19.851 -3.098 28.904 hybrid contribution -0.164 0.411 0.552 0.707 sum 20.616 -19.440 -2.546 28.450 Atomic orbital electron populations 1.69876 1.06220 1.27536 1.49085 1.24790 0.94807 0.99199 0.93771 0.86817 0.80581 0.83192 0.79107 1.19777 1.20816 1.18466 1.21056 0.88310 0.95339 1.53739 0.90133 1.19558 0.95384 0.77918 0.97078 1.46071 1.04844 1.11567 1.72471 1.19920 0.83720 0.89431 0.78480 1.90705 1.55321 1.45669 1.49670 1.22829 0.77670 0.97357 1.04833 1.86542 1.21830 1.32427 1.83072 1.22621 0.90401 0.81420 0.72610 1.90731 1.66782 1.35486 1.45343 1.21848 0.89075 0.99723 1.06321 0.83598 1.23289 1.02836 1.00192 0.90807 1.21073 0.99320 0.87187 1.02828 0.84783 1.18760 0.98538 0.94519 0.94251 1.20762 0.92638 0.95854 0.96871 1.20940 0.99095 0.93706 0.98449 1.21048 0.98491 1.01433 0.93171 1.17555 1.00174 0.89602 0.88957 1.91515 1.95798 1.65804 1.58013 1.17320 0.92490 0.96527 0.88110 1.91499 1.66210 1.95311 1.57838 0.92157 0.95418 0.95868 0.76712 0.88278 0.88283 0.86016 0.87244 0.85129 0.84422 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.55 -14.60 9.83 -34.44 -0.34 -14.94 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.29 4.50 -5.19 -0.02 5.27 16 10 N -0.70 -13.50 5.55 -61.47 -0.34 -13.84 16 11 C 0.50 9.24 7.91 -10.99 -0.09 9.15 16 12 O -0.54 -12.07 16.50 -14.10 -0.23 -12.31 16 13 C 0.05 0.69 5.94 36.00 0.21 0.91 16 14 O -0.32 -4.58 9.75 -45.89 -0.45 -5.02 16 15 C 0.49 5.64 7.60 36.01 0.27 5.91 16 16 O -0.50 -6.13 11.46 -18.75 -0.21 -6.35 16 17 C -0.15 -1.25 6.30 -91.77 -0.58 -1.82 16 18 H 0.15 1.02 8.14 -51.93 -0.42 0.59 16 19 C -0.13 -0.76 9.58 -26.70 -0.26 -1.01 16 20 C -0.09 -0.64 5.80 -91.74 -0.53 -1.17 16 21 H 0.13 0.82 7.86 -51.93 -0.41 0.41 16 22 C -0.06 -0.56 4.38 -104.57 -0.46 -1.02 16 23 C -0.04 -0.36 6.18 -39.58 -0.24 -0.61 16 24 C -0.10 -0.81 10.04 -39.59 -0.40 -1.21 16 25 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 26 C 0.06 0.61 7.31 -39.36 -0.29 0.32 16 27 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 28 C 0.08 0.82 7.25 -39.37 -0.29 0.54 16 29 F -0.13 -1.51 16.52 2.25 0.04 -1.47 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 32 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 33 H 0.40 6.61 8.32 -40.82 -0.34 6.27 16 34 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 35 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 36 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.57 6.18 -51.93 -0.32 0.25 16 38 H 0.13 0.94 5.77 -52.49 -0.30 0.63 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -33.94 354.97 -7.45 -41.39 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.25 Total: 1.69 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -3.49 Total: 0.97 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.43 Total: -39.04 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.90 Total: -23.68 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.94 -7.45 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745241444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.853 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds