Wall clock time and date at job start Tue Mar 31 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48504 * 109.46960 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.47271 * 29.99720 * 3 2 1 6 6 H 1.48500 * 109.47599 * 150.00062 * 3 2 1 7 7 C 1.37879 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99774 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00126 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00189 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00316 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47712 * 180.02562 * 13 11 10 15 15 C 1.34226 * 117.00219 * 180.02562 * 14 13 11 16 16 O 1.20823 * 119.99909 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99921 * 180.02562 * 15 14 13 18 18 H 1.08995 * 115.56362 * 34.30842 * 17 15 14 19 19 C 1.53006 * 117.49412 * 248.62100 * 17 15 14 20 20 C 1.52999 * 117.49906 * 179.97438 * 17 15 14 21 21 H 1.09002 * 117.49803 * 214.97533 * 20 17 15 22 22 C 1.50700 * 117.51845 * 0.02562 * 20 17 15 23 23 C 1.38264 * 119.99730 * 59.88264 * 22 20 17 24 24 C 1.38212 * 120.06878 * 179.97438 * 23 22 20 25 25 C 1.38251 * 120.07226 * 0.02918 * 24 23 22 26 26 C 1.38377 * 120.00166 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.03497 * 180.02562 * 26 25 24 28 28 C 1.38361 * 120.00236 * 239.61049 * 22 20 17 29 29 F 1.35103 * 120.03645 * 359.97438 * 28 22 20 30 30 H 0.97006 * 119.99745 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47513 * 60.00412 * 9 7 2 32 32 H 1.09004 * 109.47569 * 300.00177 * 9 7 2 33 33 H 0.96998 * 119.99715 * 359.97438 * 10 9 7 34 34 H 1.09006 * 109.47071 * 59.99634 * 13 11 10 35 35 H 1.09003 * 109.47130 * 300.00495 * 13 11 10 36 36 H 1.09004 * 117.49624 * 145.02403 * 19 17 15 37 37 H 1.08992 * 117.49824 * 359.97438 * 19 17 15 38 38 H 1.07997 * 119.96636 * 0.02562 * 23 22 20 39 39 H 1.08000 * 119.96380 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00475 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 5.3249 -2.8216 0.0001 12 8 6.1130 -1.8998 -0.0004 13 6 5.8272 -4.2423 0.0008 14 8 7.2793 -4.2424 0.0014 15 6 7.8886 -5.4384 0.0015 16 8 7.2305 -6.4517 0.0017 17 6 9.3935 -5.5173 0.0027 18 1 9.9053 -4.7310 0.5575 19 6 10.0740 -6.0480 -1.2608 20 6 10.0280 -6.9096 0.0034 21 1 10.9572 -7.0389 0.5583 22 6 9.1005 -8.0974 0.0023 23 6 8.2027 -8.2724 -1.0346 24 6 7.3518 -9.3615 -1.0373 25 6 7.3961 -10.2779 -0.0031 26 6 8.2934 -10.1056 1.0361 27 9 8.3377 -11.0009 2.0468 28 6 9.1513 -9.0158 1.0359 29 9 10.0324 -8.8487 2.0463 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8745 -0.6808 -0.8905 33 1 3.3695 -3.3125 0.0009 34 1 5.4638 -4.7567 -0.8889 35 1 5.4639 -4.7558 0.8911 36 1 11.0336 -5.6109 -1.5371 37 1 9.4332 -6.3404 -2.0925 38 1 8.1669 -7.5578 -1.8435 39 1 6.6509 -9.4964 -1.8479 40 1 6.7310 -11.1288 -0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745241444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:38 Heat of formation + Delta-G solvation = -165.710302 kcal Electronic energy + Delta-G solvation = -28195.027173 eV Core-core repulsion = 23611.718289 eV Total energy + Delta-G solvation = -4583.308885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.48255 -49.57508 -42.07399 -40.73421 -39.92394 -38.05531 -37.01423 -36.20433 -34.46748 -31.83025 -31.27352 -31.08741 -29.02175 -26.09959 -25.26544 -24.04274 -23.73878 -22.17265 -21.73022 -21.25850 -19.50246 -19.22077 -18.79144 -18.22483 -18.06258 -17.76637 -17.71882 -17.32939 -17.01363 -16.76434 -16.29385 -16.02964 -15.99890 -15.86212 -15.57607 -15.36201 -14.96769 -14.61741 -14.52419 -14.29514 -13.92300 -13.76543 -13.64183 -13.50858 -13.26249 -13.07627 -12.71138 -12.51137 -12.20193 -11.94094 -11.91839 -11.81153 -11.69801 -11.67468 -11.45568 -10.97524 -10.92629 -10.04651 -9.70089 -9.48967 -8.40401 -6.48026 -0.02775 0.01695 1.00554 1.21778 1.33578 1.36962 1.47900 1.51693 2.27940 2.34590 2.46578 2.71373 2.90897 2.95090 3.26019 3.45961 3.52745 3.60591 3.69306 3.75065 3.89057 3.95709 4.06107 4.06921 4.22728 4.23001 4.69786 4.74634 4.75896 4.83834 4.90853 4.96813 4.99975 5.03217 5.21835 5.23129 5.28630 5.37332 5.39912 5.81924 6.05246 6.51646 6.60573 6.73190 7.11418 7.27088 8.74125 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002134 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.825403 B =13115.533449 C =13846.299181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.697 5.697 11 C 0.503 3.497 12 O -0.579 6.579 13 C 0.061 3.939 14 O -0.344 6.344 15 C 0.485 3.515 16 O -0.506 6.506 17 C -0.166 4.166 18 H 0.157 0.843 19 C -0.109 4.109 20 C -0.092 4.092 21 H 0.144 0.856 22 C -0.065 4.065 23 C -0.048 4.048 24 C -0.100 4.100 25 C -0.123 4.123 26 C 0.032 3.968 27 F -0.146 7.146 28 C 0.050 3.950 29 F -0.142 7.142 30 H 0.273 0.727 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.413 0.587 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.883 -20.633 -4.533 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.289 3.711 12 O -0.459 6.459 13 C -0.016 4.016 14 O -0.260 6.260 15 C 0.329 3.671 16 O -0.394 6.394 17 C -0.185 4.185 18 H 0.175 0.825 19 C -0.145 4.145 20 C -0.110 4.110 21 H 0.162 0.838 22 C -0.066 4.066 23 C -0.066 4.066 24 C -0.118 4.118 25 C -0.141 4.141 26 C 0.012 3.988 27 F -0.125 7.125 28 C 0.030 3.970 29 F -0.120 7.120 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.249 0.751 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.168 0.832 37 H 0.135 0.865 38 H 0.164 0.836 39 H 0.183 0.817 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 22.064 -20.169 -4.446 30.222 hybrid contribution -0.580 0.395 0.949 1.180 sum 21.484 -19.773 -3.497 29.407 Atomic orbital electron populations 1.69979 1.07727 1.28661 1.50549 1.25598 0.95533 1.02710 0.93566 0.85865 0.79273 0.79283 0.79535 1.18835 1.20000 1.18329 1.21267 0.89813 0.94686 1.52803 0.92046 1.19165 0.93435 0.80383 0.96124 1.45867 1.05941 1.10313 1.72758 1.20635 0.82658 0.91171 0.76598 1.90682 1.56201 1.47622 1.51382 1.22683 0.78231 0.93624 1.07032 1.86543 1.21675 1.34153 1.83646 1.23217 0.91517 0.80450 0.71886 1.90722 1.67289 1.35487 1.45949 1.21990 0.86978 1.00569 1.08983 0.82536 1.23518 1.03591 0.97710 0.89712 1.21174 0.99138 0.86076 1.04633 0.83835 1.19017 0.98969 0.94724 0.93870 1.21056 0.92296 0.96321 0.96934 1.21322 0.98964 0.92915 0.98640 1.21340 0.98025 1.02224 0.92537 1.17925 1.01385 0.89863 0.89601 1.91472 1.95989 1.66266 1.58727 1.17636 0.93085 0.97555 0.88705 1.91457 1.66673 1.95459 1.58459 0.91818 0.96637 0.96497 0.75104 0.85454 0.86477 0.83226 0.86537 0.83590 0.81708 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.96 21.45 0.30 -54.35 16 2 C 0.03 1.46 5.47 84.66 0.46 1.93 16 3 Si 0.94 42.99 27.47 68.60 1.88 44.88 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 7 C -0.55 -29.35 9.83 25.60 0.25 -29.10 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 10.96 4.50 85.63 0.38 11.35 16 10 N -0.70 -26.26 5.55 -466.80 -2.59 -28.85 16 11 C 0.50 17.92 7.91 87.66 0.69 18.61 16 12 O -0.58 -25.69 16.50 15.77 0.26 -25.43 16 13 C 0.06 1.54 5.94 71.23 0.42 1.96 16 14 O -0.34 -9.08 9.75 -45.02 -0.44 -9.52 16 15 C 0.48 10.23 7.60 71.24 0.54 10.77 16 16 O -0.51 -11.40 11.46 21.97 0.25 -11.14 16 17 C -0.17 -2.37 6.30 -11.54 -0.07 -2.45 16 18 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 19 C -0.11 -0.86 9.58 30.61 0.29 -0.57 16 20 C -0.09 -1.18 5.80 -11.52 -0.07 -1.25 16 21 H 0.14 1.52 7.86 -2.39 -0.02 1.50 16 22 C -0.06 -1.12 4.38 -19.83 -0.09 -1.21 16 23 C -0.05 -0.70 6.18 22.27 0.14 -0.56 16 24 C -0.10 -1.32 10.04 22.27 0.22 -1.10 16 25 C -0.12 -1.92 10.02 22.31 0.22 -1.69 16 26 C 0.03 0.68 7.31 22.41 0.16 0.85 16 27 F -0.15 -3.50 17.18 44.97 0.77 -2.72 16 28 C 0.05 1.09 7.25 22.41 0.16 1.25 16 29 F -0.14 -3.37 16.52 44.97 0.74 -2.62 16 30 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 32 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 33 H 0.41 13.20 8.32 -92.71 -0.77 12.43 16 34 H 0.13 2.51 8.13 -2.38 -0.02 2.49 16 35 H 0.12 2.56 8.13 -2.39 -0.02 2.54 16 36 H 0.15 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.12 0.78 6.18 -2.39 -0.01 0.77 16 38 H 0.15 1.62 5.77 -2.91 -0.02 1.61 16 39 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.12 354.97 5.21 -68.91 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.29 Total: 12.07 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 3.74 Total: 8.79 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.29 Total: -83.20 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: 0.07 Total: -46.10 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.52 Total: -5.35 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Total: -74.12 5.21 -68.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745241444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.797 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds