Wall clock time and date at job start Tue Mar 31 2020 22:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30473 * 126.18158 * 2 1 4 4 N 1.28666 * 109.51257 * 179.73214 * 3 2 1 5 5 C 1.31272 * 109.23180 * 0.38207 * 4 3 2 6 6 C 1.47746 * 126.38025 * 179.88398 * 5 4 3 7 7 C 1.39712 * 119.99481 * 359.69319 * 6 5 4 8 8 C 1.37619 * 120.00307 * 180.02562 * 7 6 5 9 9 C 1.39745 * 119.99499 * 0.02562 * 8 7 6 10 10 C 1.47704 * 119.99954 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00051 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99654 * 179.97438 * 10 9 8 13 13 C 1.40512 * 119.99684 * 179.97438 * 12 10 9 14 14 C 1.40666 * 126.08672 * 359.69570 * 13 12 10 15 15 N 1.30903 * 108.38422 * 179.84746 * 14 13 12 16 16 N 1.40066 * 108.41469 * 0.40591 * 15 14 13 17 17 C 1.37317 * 126.06623 * 179.71787 * 16 15 14 18 18 H 1.08007 * 119.99751 * 180.02562 * 17 16 15 19 19 C 1.38981 * 120.00328 * 0.02562 * 17 16 15 20 20 N 1.31296 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00188 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46994 * 60.00306 * 21 19 17 23 23 H 1.48504 * 109.47303 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47309 * 300.00262 * 21 19 17 25 25 C 1.35703 * 126.08145 * 179.97438 * 13 12 10 26 26 C 1.39732 * 119.99408 * 0.24995 * 9 8 7 27 27 C 1.37618 * 119.99782 * 359.49539 * 26 9 8 28 28 O 1.34333 * 126.18436 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47128 * 270.04237 * 1 2 3 30 30 H 1.09000 * 109.46914 * 30.03988 * 1 2 3 31 31 H 1.08993 * 109.47264 * 150.04069 * 1 2 3 32 32 H 1.08002 * 119.99646 * 0.04084 * 7 6 5 33 33 H 1.07996 * 120.00029 * 179.97438 * 8 7 6 34 34 H 0.96995 * 120.00015 * 359.72416 * 12 10 9 35 35 H 1.08001 * 125.80763 * 0.02562 * 14 13 12 36 36 H 0.96998 * 120.00109 * 180.02562 * 20 19 17 37 37 H 1.07999 * 126.25195 * 359.96325 * 25 13 12 38 38 H 1.08005 * 120.00192 * 179.74595 * 26 9 8 39 39 H 1.08003 * 120.00315 * 180.27619 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2772 1.0531 0.0000 4 7 3.5098 0.6841 0.0057 5 6 3.5685 -0.6273 0.0012 6 6 4.7960 -1.4496 0.0028 7 6 6.0497 -0.8330 0.0031 8 6 7.1932 -1.5988 0.0041 9 6 7.1003 -2.9931 0.0042 10 6 8.3275 -3.8151 0.0046 11 8 9.4186 -3.2785 0.0044 12 7 8.2378 -5.1599 0.0053 13 6 9.4052 -5.9418 0.0052 14 6 10.7262 -5.4584 -0.0016 15 7 11.5408 -6.4831 0.0039 16 7 10.7759 -7.6565 0.0050 17 6 11.2643 -8.9398 0.0049 18 1 10.5822 -9.7772 0.0054 19 6 12.6364 -9.1613 0.0040 20 7 13.4656 -8.1434 0.0039 21 14 13.3007 -10.9072 0.0045 22 1 12.8217 -11.6194 -1.2073 23 1 14.7853 -10.8719 0.0041 24 1 12.8233 -11.6181 1.2177 25 6 9.4590 -7.2978 0.0062 26 6 5.8463 -3.6096 -0.0019 27 6 4.7030 -2.8437 0.0024 28 8 2.3001 -1.0842 0.0005 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 6.1215 0.2446 0.0029 33 1 8.1623 -1.1221 0.0039 34 1 7.3674 -5.5879 0.0095 35 1 11.0186 -4.4188 -0.0073 36 1 14.4232 -8.2979 0.0030 37 1 8.6140 -7.9704 0.0079 38 1 5.7744 -4.6873 -0.0060 39 1 3.7338 -3.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746187369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:25 Heat of formation + Delta-G solvation = 121.472291 kcal Electronic energy + Delta-G solvation = -26501.638362 eV Core-core repulsion = 22413.764587 eV Total energy + Delta-G solvation = -4087.873776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.52517 -40.35708 -39.44386 -38.09358 -36.56787 -34.40639 -33.86323 -33.23888 -31.70719 -31.38218 -30.27287 -28.60899 -27.63278 -25.44874 -24.64863 -23.52170 -22.69903 -22.25367 -21.11794 -20.50119 -19.46952 -18.34439 -17.82679 -17.70082 -17.19451 -16.46259 -15.75382 -15.51960 -15.11627 -15.07659 -14.75202 -14.54798 -14.11865 -13.93159 -13.91982 -13.65022 -13.35644 -13.34911 -12.98526 -12.93391 -12.74331 -12.51702 -12.25150 -11.71223 -11.57898 -11.46790 -11.28493 -11.27981 -11.00925 -10.58798 -10.51866 -10.22986 -9.39927 -9.38982 -9.21640 -8.88081 -8.86168 -8.11074 -6.76186 -6.59762 -4.27073 -0.09757 1.01031 1.11475 1.74520 2.01545 2.81327 2.99235 3.02196 3.06727 3.31518 3.43212 3.48587 3.79982 3.83102 3.88399 4.31332 4.40343 4.51074 4.55304 4.63473 4.72253 4.81948 4.86063 4.93314 4.98290 5.02320 5.03168 5.20621 5.31632 5.36576 5.63014 5.87843 5.95209 6.06001 6.19505 6.36280 6.44493 6.83176 6.89751 7.03911 7.18114 7.80686 7.87486 8.07565 8.21035 8.55396 8.74589 9.32308 9.61520 10.35991 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.001734 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.101387 B =16142.616696 C =16818.570139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.161 3.839 3 N -0.286 5.286 4 N -0.273 5.273 5 C 0.213 3.787 6 C -0.018 4.018 7 C -0.071 4.071 8 C -0.064 4.064 9 C -0.086 4.086 10 C 0.533 3.467 11 O -0.527 6.527 12 N -0.612 5.612 13 C -0.064 4.064 14 C -0.029 4.029 15 N -0.261 5.261 16 N -0.140 5.140 17 C -0.323 4.323 18 H 0.117 0.883 19 C 0.046 3.954 20 N -0.768 5.768 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.083 4.083 26 C -0.094 4.094 27 C -0.088 4.088 28 O -0.220 6.220 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.396 0.604 35 H 0.177 0.823 36 H 0.276 0.724 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.837 9.452 -0.020 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 N -0.134 5.134 4 N -0.121 5.121 5 C 0.005 3.995 6 C -0.020 4.020 7 C -0.090 4.090 8 C -0.083 4.083 9 C -0.090 4.090 10 C 0.320 3.680 11 O -0.405 6.405 12 N -0.253 5.253 13 C -0.170 4.170 14 C -0.204 4.204 15 N -0.091 5.091 16 N 0.093 4.907 17 C -0.455 4.455 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.394 5.394 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.234 4.234 26 C -0.113 4.113 27 C -0.107 4.107 28 O -0.100 6.100 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.231 0.769 35 H 0.194 0.806 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.226 10.754 -0.017 23.795 hybrid contribution -1.616 -2.001 0.010 2.572 sum -22.842 8.753 -0.007 24.462 Atomic orbital electron populations 1.20387 0.79942 1.05871 1.05395 1.28083 0.97846 0.79438 0.99538 1.74458 0.96044 1.25488 1.17377 1.74757 1.11978 1.08229 1.17092 1.25495 0.83438 0.90485 1.00047 1.17362 0.86730 0.91503 1.06434 1.21148 0.89617 1.01220 0.97019 1.21273 0.99362 0.92093 0.95579 1.20389 0.93417 0.94632 1.00611 1.17945 0.88469 0.81944 0.79680 1.90695 1.27828 1.71927 1.50055 1.42404 1.07875 1.04939 1.70130 1.17244 0.86148 0.89248 1.24336 1.24143 0.89184 0.99582 1.07511 1.78275 1.16751 0.88364 1.25758 1.44563 1.01806 1.05598 1.38736 1.19849 0.92351 0.79880 1.53455 0.86585 1.25651 0.95950 1.00085 0.95441 1.70203 1.03700 1.30663 1.34854 0.85883 0.78305 0.80415 0.79487 1.19134 1.20086 1.19140 1.21250 0.88738 0.93424 1.20014 1.21263 0.91031 1.00422 0.98579 1.21104 0.99476 0.91619 0.98542 1.84811 1.17142 1.38051 1.69950 0.88145 0.87384 0.88732 0.83657 0.83129 0.76930 0.80606 0.91315 0.83626 0.84440 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.00 0.38 0.20 16 2 C 0.16 1.38 8.47 -12.86 -0.11 1.27 16 3 N -0.29 -3.35 12.22 32.58 0.40 -2.96 16 4 N -0.27 -3.48 11.91 32.06 0.38 -3.10 16 5 C 0.21 2.37 7.98 -13.91 -0.11 2.26 16 6 C -0.02 -0.19 5.88 -104.91 -0.62 -0.80 16 7 C -0.07 -0.73 9.68 -39.26 -0.38 -1.11 16 8 C -0.06 -0.75 9.58 -39.24 -0.38 -1.13 16 9 C -0.09 -1.09 5.88 -104.91 -0.62 -1.71 16 10 C 0.53 9.09 7.74 -12.39 -0.10 8.99 16 11 O -0.53 -10.98 13.48 5.28 0.07 -10.91 16 12 N -0.61 -10.43 5.41 -10.89 -0.06 -10.49 16 13 C -0.06 -1.44 6.90 -83.87 -0.58 -2.02 16 14 C -0.03 -0.74 10.85 -17.03 -0.18 -0.93 16 15 N -0.26 -7.48 10.39 30.80 0.32 -7.16 16 16 N -0.14 -3.77 3.74 -11.41 -0.04 -3.81 16 17 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16 18 H 0.12 2.67 7.83 -52.48 -0.41 2.25 16 19 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 20 N -0.77 -21.19 11.81 55.49 0.66 -20.54 16 21 Si 0.94 18.59 29.55 -169.99 -5.02 13.56 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.08 -1.90 11.50 -16.38 -0.19 -2.09 16 26 C -0.09 -0.91 9.52 -39.25 -0.37 -1.28 16 27 C -0.09 -0.78 9.71 -39.26 -0.38 -1.16 16 28 O -0.22 -2.14 10.65 4.18 0.04 -2.09 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.15 1.36 7.85 -52.49 -0.41 0.95 16 33 H 0.15 1.76 7.64 -52.49 -0.40 1.36 16 34 H 0.40 5.04 6.84 -40.82 -0.28 4.76 16 35 H 0.18 4.51 5.91 -52.49 -0.31 4.20 16 36 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 38 H 0.14 1.00 6.38 -52.48 -0.34 0.67 16 39 H 0.14 0.92 7.92 -52.48 -0.42 0.50 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -35.60 351.58 -5.23 -40.82 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.39 Total: 8.34 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.88 Total: -6.97 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 1.65 Total: -48.06 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.12 Total: -13.00 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.60 -5.23 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746187369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.295 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds