Wall clock time and date at job start Tue Mar 31 2020 22:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30473 * 126.18158 * 2 1 4 4 N 1.28666 * 109.51257 * 179.73214 * 3 2 1 5 5 C 1.31272 * 109.23180 * 0.38207 * 4 3 2 6 6 C 1.47746 * 126.38025 * 179.88398 * 5 4 3 7 7 C 1.39712 * 119.99481 * 359.69319 * 6 5 4 8 8 C 1.37619 * 120.00307 * 180.02562 * 7 6 5 9 9 C 1.39745 * 119.99499 * 0.02562 * 8 7 6 10 10 C 1.47704 * 119.99954 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00051 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99654 * 179.97438 * 10 9 8 13 13 C 1.40512 * 119.99684 * 179.97438 * 12 10 9 14 14 C 1.40666 * 126.08672 * 359.69570 * 13 12 10 15 15 N 1.30903 * 108.38422 * 179.84746 * 14 13 12 16 16 N 1.40066 * 108.41469 * 0.40591 * 15 14 13 17 17 C 1.37317 * 126.06623 * 179.71787 * 16 15 14 18 18 H 1.08007 * 119.99751 * 180.02562 * 17 16 15 19 19 C 1.38981 * 120.00328 * 0.02562 * 17 16 15 20 20 N 1.31296 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00188 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46994 * 60.00306 * 21 19 17 23 23 H 1.48504 * 109.47303 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47309 * 300.00262 * 21 19 17 25 25 C 1.35703 * 126.08145 * 179.97438 * 13 12 10 26 26 C 1.39732 * 119.99408 * 0.24995 * 9 8 7 27 27 C 1.37618 * 119.99782 * 359.49539 * 26 9 8 28 28 O 1.34333 * 126.18436 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47128 * 270.04237 * 1 2 3 30 30 H 1.09000 * 109.46914 * 30.03988 * 1 2 3 31 31 H 1.08993 * 109.47264 * 150.04069 * 1 2 3 32 32 H 1.08002 * 119.99646 * 0.04084 * 7 6 5 33 33 H 1.07996 * 120.00029 * 179.97438 * 8 7 6 34 34 H 0.96995 * 120.00015 * 359.72416 * 12 10 9 35 35 H 1.08001 * 125.80763 * 0.02562 * 14 13 12 36 36 H 0.96998 * 120.00109 * 180.02562 * 20 19 17 37 37 H 1.07999 * 126.25195 * 359.96325 * 25 13 12 38 38 H 1.08005 * 120.00192 * 179.74595 * 26 9 8 39 39 H 1.08003 * 120.00315 * 180.27619 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2772 1.0531 0.0000 4 7 3.5098 0.6841 0.0057 5 6 3.5685 -0.6273 0.0012 6 6 4.7960 -1.4496 0.0028 7 6 6.0497 -0.8330 0.0031 8 6 7.1932 -1.5988 0.0041 9 6 7.1003 -2.9931 0.0042 10 6 8.3275 -3.8151 0.0046 11 8 9.4186 -3.2785 0.0044 12 7 8.2378 -5.1599 0.0053 13 6 9.4052 -5.9418 0.0052 14 6 10.7262 -5.4584 -0.0016 15 7 11.5408 -6.4831 0.0039 16 7 10.7759 -7.6565 0.0050 17 6 11.2643 -8.9398 0.0049 18 1 10.5822 -9.7772 0.0054 19 6 12.6364 -9.1613 0.0040 20 7 13.4656 -8.1434 0.0039 21 14 13.3007 -10.9072 0.0045 22 1 12.8217 -11.6194 -1.2073 23 1 14.7853 -10.8719 0.0041 24 1 12.8233 -11.6181 1.2177 25 6 9.4590 -7.2978 0.0062 26 6 5.8463 -3.6096 -0.0019 27 6 4.7030 -2.8437 0.0024 28 8 2.3001 -1.0842 0.0005 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 6.1215 0.2446 0.0029 33 1 8.1623 -1.1221 0.0039 34 1 7.3674 -5.5879 0.0095 35 1 11.0186 -4.4188 -0.0073 36 1 14.4232 -8.2979 0.0030 37 1 8.6140 -7.9704 0.0079 38 1 5.7744 -4.6873 -0.0060 39 1 3.7338 -3.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746187369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:25 Heat of formation + Delta-G solvation = 93.375329 kcal Electronic energy + Delta-G solvation = -26502.856738 eV Core-core repulsion = 22413.764587 eV Total energy + Delta-G solvation = -4089.092151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.28157 -41.84187 -40.87971 -39.36826 -37.34299 -36.02592 -35.10451 -34.49649 -32.56945 -32.22559 -32.10916 -29.81206 -28.85527 -26.95956 -25.91936 -24.32733 -23.66383 -23.03514 -22.83589 -21.87467 -21.18973 -19.45308 -19.14983 -18.57803 -18.39740 -17.40391 -17.33128 -17.01739 -16.31921 -16.20076 -15.91515 -15.63760 -15.34602 -15.12262 -14.99486 -14.78561 -14.56655 -14.28087 -13.78468 -13.77072 -13.54384 -13.48529 -13.36210 -13.30596 -13.04377 -12.86599 -12.85685 -12.34594 -12.13268 -12.04740 -11.88088 -11.29113 -11.00947 -10.90679 -10.78220 -10.19487 -10.10092 -9.74694 -8.53352 -8.45956 -6.23545 -0.95297 0.21945 0.31878 1.04642 1.15378 1.32143 1.41070 1.57493 1.65540 1.90506 2.00637 2.24611 2.42876 2.64256 2.80091 2.89975 3.10627 3.27353 3.58612 3.73822 3.77245 3.89162 4.10028 4.11369 4.32196 4.35329 4.45022 4.51382 4.58768 4.63802 4.71864 4.87149 4.99927 5.03683 5.04480 5.06815 5.14572 5.25256 5.30379 5.41920 5.57313 5.96248 6.30784 6.67851 6.74080 7.10775 7.30327 7.46991 7.68190 8.53127 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.001734 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.101387 B =16142.616696 C =16818.570139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.179 3.821 3 N -0.328 5.328 4 N -0.301 5.301 5 C 0.204 3.796 6 C -0.014 4.014 7 C -0.072 4.072 8 C -0.068 4.068 9 C -0.105 4.105 10 C 0.536 3.464 11 O -0.571 6.571 12 N -0.603 5.603 13 C -0.049 4.049 14 C -0.058 4.058 15 N -0.312 5.312 16 N -0.167 5.167 17 C -0.354 4.354 18 H 0.143 0.857 19 C -0.007 4.007 20 N -0.825 5.825 21 Si 1.019 2.981 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.253 1.253 25 C -0.076 4.076 26 C -0.077 4.077 27 C -0.076 4.076 28 O -0.218 6.218 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.421 0.579 35 H 0.167 0.833 36 H 0.276 0.724 37 H 0.192 0.808 38 H 0.168 0.832 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.162 7.607 -0.004 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 N -0.175 5.175 4 N -0.148 5.148 5 C -0.005 4.005 6 C -0.016 4.016 7 C -0.091 4.091 8 C -0.087 4.087 9 C -0.108 4.108 10 C 0.325 3.675 11 O -0.452 6.452 12 N -0.248 5.248 13 C -0.155 4.155 14 C -0.233 4.233 15 N -0.143 5.143 16 N 0.064 4.936 17 C -0.485 4.485 18 H 0.160 0.840 19 C -0.218 4.218 20 N -0.453 5.453 21 Si 0.838 3.162 22 H -0.177 1.177 23 H -0.205 1.205 24 H -0.177 1.177 25 C -0.226 4.226 26 C -0.095 4.095 27 C -0.095 4.095 28 O -0.098 6.098 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.259 0.741 35 H 0.184 0.816 36 H 0.086 0.914 37 H 0.209 0.791 38 H 0.186 0.814 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.634 8.933 -0.001 27.146 hybrid contribution -0.582 -1.205 0.007 1.338 sum -26.217 7.728 0.005 27.332 Atomic orbital electron populations 1.20803 0.76016 1.07636 1.07211 1.29205 0.99428 0.78408 0.96011 1.74413 0.96113 1.27016 1.19952 1.74682 1.13022 1.09270 1.17781 1.25515 0.84156 0.90224 1.00557 1.17522 0.86311 0.92322 1.05483 1.21120 0.89432 1.01395 0.97146 1.21211 0.99492 0.92083 0.95945 1.20044 0.92607 0.94217 1.03977 1.18651 0.89352 0.81943 0.77569 1.90680 1.30144 1.72761 1.51596 1.42273 1.07356 1.04763 1.70439 1.17302 0.86696 0.89661 1.21829 1.24189 0.91121 0.98936 1.09034 1.78166 1.18903 0.89771 1.27503 1.44848 1.03007 1.05480 1.40236 1.20609 0.93543 0.80353 1.54022 0.83952 1.26885 0.95978 1.04855 0.94130 1.70395 1.03964 1.33650 1.37252 0.84652 0.77021 0.74249 0.80289 1.17679 1.20466 1.17694 1.22027 0.88710 0.94203 1.17685 1.21505 0.89594 1.01916 0.96512 1.21386 1.00517 0.90729 0.96870 1.84827 1.16625 1.38296 1.70057 0.86016 0.86145 0.86348 0.83256 0.84180 0.74055 0.81584 0.91420 0.79071 0.81449 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.14 10.51 71.24 0.75 0.61 16 2 C 0.18 2.64 8.47 88.31 0.75 3.39 16 3 N -0.33 -7.34 12.22 -165.33 -2.02 -9.36 16 4 N -0.30 -7.46 11.91 -166.32 -1.98 -9.44 16 5 C 0.20 4.19 7.98 87.29 0.70 4.89 16 6 C -0.01 -0.26 5.88 -20.05 -0.12 -0.38 16 7 C -0.07 -1.44 9.68 22.48 0.22 -1.22 16 8 C -0.07 -1.59 9.58 22.49 0.22 -1.38 16 9 C -0.10 -2.52 5.88 -20.05 -0.12 -2.64 16 10 C 0.54 18.17 7.74 86.74 0.67 18.84 16 11 O -0.57 -24.81 13.48 -4.01 -0.05 -24.86 16 12 N -0.60 -19.69 5.41 -306.63 -1.66 -21.35 16 13 C -0.05 -2.17 6.90 37.75 0.26 -1.91 16 14 C -0.06 -3.11 10.85 85.42 0.93 -2.19 16 15 N -0.31 -18.71 10.39 -56.46 -0.59 -19.30 16 16 N -0.17 -9.12 3.74 -190.00 -0.71 -9.83 16 17 C -0.35 -18.43 10.25 84.01 0.86 -17.57 16 18 H 0.14 6.32 7.83 -2.91 -0.02 6.30 16 19 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 20 N -0.82 -47.47 11.81 21.66 0.26 -47.22 16 21 Si 1.02 38.03 29.55 68.60 2.03 40.06 16 22 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 25 C -0.08 -3.37 11.50 83.38 0.96 -2.42 16 26 C -0.08 -1.22 9.52 22.48 0.21 -1.00 16 27 C -0.08 -1.07 9.71 22.48 0.22 -0.85 16 28 O -0.22 -3.63 10.65 -7.95 -0.08 -3.71 16 29 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.15 2.83 7.85 -2.91 -0.02 2.81 16 33 H 0.14 3.50 7.64 -2.91 -0.02 3.47 16 34 H 0.42 9.27 6.84 -92.71 -0.63 8.64 16 35 H 0.17 9.14 5.91 -2.91 -0.02 9.12 16 36 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 38 H 0.17 1.60 6.38 -2.91 -0.02 1.59 16 39 H 0.17 1.37 7.92 -2.91 -0.02 1.35 16 Total: -1.00 -83.98 351.58 2.66 -81.32 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.51 Total: 27.42 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 6.97 Total: -3.72 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -6.70 Total: -116.50 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.14 Total: -28.58 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -83.98 2.66 -81.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746187369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.695 kcal (2) G-P(sol) polarization free energy of solvation -83.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds