Wall clock time and date at job start Tue Mar 31 2020 22:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30378 * 126.18845 * 2 1 4 4 N 1.28665 * 109.52582 * 180.02562 * 3 2 1 5 5 C 1.31225 * 109.24622 * 0.02562 * 4 3 2 6 6 C 1.47872 * 126.37513 * 180.02562 * 5 4 3 7 7 C 1.39676 * 120.06910 * 180.02562 * 6 5 4 8 8 C 1.38064 * 120.14908 * 179.97438 * 7 6 5 9 9 C 1.38096 * 120.29825 * 359.95985 * 8 7 6 10 10 C 1.39655 * 120.14105 * 0.04273 * 9 8 7 11 11 C 1.47843 * 120.07626 * 180.25412 * 10 9 8 12 12 O 1.21581 * 120.00123 * 179.72249 * 11 10 9 13 13 N 1.34778 * 119.99848 * 359.72259 * 11 10 9 14 14 C 1.40522 * 119.99989 * 180.02562 * 13 11 10 15 15 C 1.40667 * 126.08145 * 359.68588 * 14 13 11 16 16 N 1.30910 * 108.38538 * 179.81801 * 15 14 13 17 17 N 1.40069 * 108.40873 * 0.44467 * 16 15 14 18 18 C 1.37320 * 126.06686 * 179.69416 * 17 16 15 19 19 H 1.08001 * 119.99702 * 174.15138 * 18 17 16 20 20 C 1.38990 * 120.00028 * 354.16086 * 18 17 16 21 21 N 1.31296 * 119.99952 * 5.93687 * 20 18 17 22 22 Si 1.86795 * 120.00132 * 185.93487 * 20 18 17 23 23 H 1.48508 * 109.46955 * 94.97438 * 22 20 18 24 24 H 1.48489 * 109.47376 * 214.97714 * 22 20 18 25 25 H 1.48507 * 109.47112 * 334.98483 * 22 20 18 26 26 C 1.35700 * 126.08771 * 180.02562 * 14 13 11 27 27 C 1.39279 * 120.07457 * 0.02562 * 6 5 4 28 28 O 1.34413 * 126.18276 * 180.35705 * 2 1 3 29 29 H 1.08995 * 109.47021 * 89.97138 * 1 2 3 30 30 H 1.08997 * 109.47084 * 209.97680 * 1 2 3 31 31 H 1.09004 * 109.46938 * 329.96945 * 1 2 3 32 32 H 1.08000 * 119.93063 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.85548 * 180.02562 * 8 7 6 34 34 H 1.07992 * 119.92880 * 180.02562 * 9 8 7 35 35 H 0.96998 * 120.00083 * 359.97438 * 13 11 10 36 36 H 1.07995 * 125.81108 * 359.97438 * 15 14 13 37 37 H 0.96993 * 119.99881 * 180.02562 * 21 20 18 38 38 H 1.07999 * 126.24659 * 359.97438 * 26 14 13 39 39 H 1.08003 * 120.14500 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2769 1.0523 0.0000 4 7 3.5095 0.6833 -0.0005 5 6 3.5686 -0.6276 -0.0015 6 6 4.7976 -1.4500 -0.0018 7 6 4.7069 -2.8438 -0.0033 8 6 5.8532 -3.6133 -0.0042 9 6 7.0962 -3.0116 -0.0043 10 6 7.2012 -1.6190 -0.0027 11 6 8.5326 -0.9763 -0.0086 12 8 8.6224 0.2361 -0.0123 13 7 9.6469 -1.7346 -0.0098 14 6 10.9124 -1.1238 -0.0148 15 6 11.1643 0.2601 -0.0251 16 7 12.4604 0.4439 -0.0230 17 7 13.0849 -0.8099 -0.0216 18 6 14.4389 -1.0386 -0.0253 19 1 14.8167 -2.0458 0.0716 20 6 15.3233 0.0260 -0.1533 21 7 14.8710 1.2587 -0.1535 22 14 17.1551 -0.2968 -0.3250 23 1 17.5219 -0.3142 -1.7640 24 1 17.9138 0.7762 0.3663 25 1 17.4858 -1.6094 0.2858 26 6 12.1089 -1.7639 -0.0170 27 6 6.0480 -0.8365 -0.0005 28 8 2.3006 -1.0849 -0.0068 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 3.7379 -3.3208 -0.0039 33 1 5.7776 -4.6906 -0.0058 34 1 7.9889 -3.6192 -0.0054 35 1 9.5752 -2.7019 -0.0064 36 1 10.4158 1.0386 -0.0310 37 1 15.4881 2.0016 -0.2433 38 1 12.2610 -2.8332 -0.0149 39 1 6.1235 0.2409 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746187380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:28 Heat of formation + Delta-G solvation = 122.342539 kcal Electronic energy + Delta-G solvation = -26711.658006 eV Core-core repulsion = 22623.821967 eV Total energy + Delta-G solvation = -4087.836039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.43885 -40.33306 -39.42286 -38.04924 -36.47541 -34.40465 -33.82350 -33.18381 -31.65533 -31.47425 -30.21586 -28.25576 -27.75799 -25.18702 -24.64654 -23.94300 -22.69027 -22.08695 -21.07406 -20.44034 -19.44384 -18.34588 -17.74569 -17.45400 -17.02942 -16.22519 -15.76719 -15.69348 -15.42568 -15.04636 -14.71934 -14.50107 -14.19492 -13.99561 -13.86122 -13.53364 -13.32588 -13.28352 -12.92664 -12.88640 -12.66472 -12.26888 -12.06588 -11.76971 -11.69230 -11.44940 -11.28799 -11.17544 -10.95082 -10.53603 -10.52069 -10.21234 -9.34891 -9.32176 -9.18425 -8.89962 -8.82284 -8.07343 -6.72859 -6.57546 -4.24322 0.08301 0.72850 1.28428 1.79980 2.14306 2.82962 3.00131 3.04365 3.10164 3.35921 3.48397 3.50377 3.82386 3.85346 3.97391 4.36061 4.43964 4.49124 4.59505 4.72166 4.73680 4.77926 4.88837 4.94505 5.00024 5.08874 5.10720 5.16749 5.33041 5.39045 5.61716 5.93014 5.94093 6.01794 6.22039 6.35830 6.46865 6.86974 6.93769 7.08032 7.21434 7.84312 7.98651 8.11628 8.24713 8.59290 8.78661 9.35983 9.65038 10.38637 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.032441 B = 0.001889 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.893382 B =14816.198699 C =15658.832716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.158 3.842 3 N -0.283 5.283 4 N -0.269 5.269 5 C 0.214 3.786 6 C -0.036 4.036 7 C -0.068 4.068 8 C -0.125 4.125 9 C -0.065 4.065 10 C -0.114 4.114 11 C 0.537 3.463 12 O -0.525 6.525 13 N -0.613 5.613 14 C -0.063 4.063 15 C -0.029 4.029 16 N -0.261 5.261 17 N -0.141 5.141 18 C -0.324 4.324 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.935 3.065 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.082 4.082 27 C -0.011 4.011 28 O -0.222 6.222 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.396 0.604 36 H 0.177 0.823 37 H 0.275 0.725 38 H 0.146 0.854 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.801 -12.205 0.095 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 N -0.131 5.131 4 N -0.116 5.116 5 C 0.006 3.994 6 C -0.038 4.038 7 C -0.088 4.088 8 C -0.143 4.143 9 C -0.085 4.085 10 C -0.118 4.118 11 C 0.324 3.676 12 O -0.403 6.403 13 N -0.255 5.255 14 C -0.168 4.168 15 C -0.204 4.204 16 N -0.092 5.092 17 N 0.091 4.909 18 C -0.456 4.456 19 H 0.134 0.866 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.233 4.233 27 C -0.031 4.031 28 O -0.102 6.102 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.230 0.770 36 H 0.194 0.806 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.347 -8.949 0.084 24.073 hybrid contribution -0.343 -2.604 -0.086 2.628 sum -22.690 -11.553 -0.002 25.462 Atomic orbital electron populations 1.20371 0.79966 1.05799 1.05321 1.28072 0.97805 0.79465 0.99867 1.74449 0.96062 1.25501 1.17059 1.74824 1.11800 1.08197 1.16743 1.25411 0.83344 0.90482 1.00138 1.17073 0.86540 0.91477 1.08735 1.21351 0.99795 0.91633 0.96052 1.21009 0.91380 1.00512 1.01374 1.21635 0.98560 0.93644 0.94613 1.19996 0.93878 0.93503 1.04401 1.17868 0.83262 0.86966 0.79539 1.90709 1.86259 1.13409 1.49887 1.42359 1.03873 1.08774 1.70541 1.17240 0.82681 0.92686 1.24237 1.24153 0.94574 0.94230 1.07491 1.78273 1.04248 1.00962 1.25687 1.44566 1.04626 1.02750 1.38912 1.19892 0.77028 0.95839 1.52851 0.86551 1.25655 1.01393 0.94581 0.95475 1.70221 1.35930 0.98431 1.34818 0.85808 0.80399 0.78942 0.78978 1.19626 1.20081 1.18774 1.21246 0.87526 0.94619 1.19933 1.21294 0.88619 1.01998 0.91181 1.84801 1.17090 1.38107 1.70239 0.88219 0.88836 0.87387 0.84807 0.84294 0.84599 0.76991 0.80594 0.91399 0.83629 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.16 1.52 8.47 -12.89 -0.11 1.41 16 3 N -0.28 -3.78 12.22 32.58 0.40 -3.38 16 4 N -0.27 -4.00 11.91 32.07 0.38 -3.62 16 5 C 0.21 2.69 7.99 -13.87 -0.11 2.58 16 6 C -0.04 -0.42 5.87 -105.03 -0.62 -1.03 16 7 C -0.07 -0.58 9.72 -39.11 -0.38 -0.96 16 8 C -0.12 -0.93 10.02 -39.70 -0.40 -1.32 16 9 C -0.07 -0.61 9.54 -39.10 -0.37 -0.98 16 10 C -0.11 -1.52 5.87 -105.02 -0.62 -2.13 16 11 C 0.54 9.53 7.74 -12.33 -0.10 9.43 16 12 O -0.53 -11.49 13.49 5.29 0.07 -11.41 16 13 N -0.61 -10.68 5.41 -10.85 -0.06 -10.73 16 14 C -0.06 -1.44 6.90 -83.86 -0.58 -2.01 16 15 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 16 N -0.26 -7.61 10.42 30.80 0.32 -7.29 16 17 N -0.14 -3.86 3.74 -11.41 -0.04 -3.90 16 18 C -0.32 -8.51 10.24 -14.81 -0.15 -8.66 16 19 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 20 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 21 N -0.77 -21.47 11.84 55.50 0.66 -20.82 16 22 Si 0.93 18.84 29.56 -169.99 -5.02 13.81 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 27 C -0.01 -0.14 9.24 -38.78 -0.36 -0.50 16 28 O -0.22 -2.33 10.66 4.03 0.04 -2.29 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 0.83 7.92 -52.49 -0.42 0.41 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.94 6.39 -52.49 -0.34 0.60 16 35 H 0.40 5.08 6.85 -40.82 -0.28 4.80 16 36 H 0.18 4.64 5.91 -52.49 -0.31 4.33 16 37 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 39 H 0.16 2.36 7.45 -52.48 -0.39 1.97 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -36.77 351.71 -5.22 -42.00 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.39 Total: 8.29 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.88 Total: -5.96 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 1.66 Total: -49.73 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.11 Total: -13.70 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.77 -5.22 -42.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746187380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.339 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds