Wall clock time and date at job start Tue Mar 31 2020 22:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48503 * 109.47214 * 274.98560 * 3 2 1 5 5 H 1.48499 * 109.47026 * 34.98207 * 3 2 1 6 6 H 1.48501 * 109.47258 * 154.98558 * 3 2 1 7 7 C 1.39912 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00061 * 147.61431 * 7 2 1 9 9 C 1.41149 * 119.99617 * 327.61241 * 7 2 1 10 10 C 1.40877 * 120.16216 * 157.94667 * 9 7 2 11 11 C 1.36372 * 119.82948 * 180.02562 * 10 9 7 12 12 C 1.39489 * 120.16718 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82843 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99813 * 37.76465 * 13 12 11 15 15 O 1.21276 * 120.00540 * 356.69841 * 14 13 12 16 16 C 1.50703 * 119.99425 * 176.69604 * 14 13 12 17 17 O 1.45208 * 109.46991 * 179.97438 * 16 14 13 18 18 C 1.34230 * 116.99983 * 180.02562 * 17 16 14 19 19 O 1.20820 * 119.99932 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.99930 * 180.02562 * 18 17 16 21 21 C 1.53781 * 113.61527 * 180.02562 * 20 18 17 22 22 C 1.53775 * 87.17379 * 139.93791 * 21 20 18 23 23 F 1.39895 * 113.61832 * 89.15532 * 22 21 20 24 24 F 1.39903 * 113.61403 * 220.05929 * 22 21 20 25 25 C 1.53784 * 113.61135 * 277.49891 * 20 18 17 26 26 C 1.39477 * 120.33157 * 0.25384 * 12 11 10 27 27 C 1.36374 * 120.17153 * 359.48503 * 26 12 11 28 28 H 0.96996 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.08280 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.91675 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99680 * 217.75549 * 13 12 11 32 32 H 1.08996 * 109.47214 * 60.00119 * 16 14 13 33 33 H 1.08995 * 109.47214 * 299.99884 * 16 14 13 34 34 H 1.08996 * 112.85129 * 48.79688 * 20 18 17 35 35 H 1.08999 * 113.60940 * 254.53047 * 21 20 18 36 36 H 1.09004 * 113.61198 * 25.34442 * 21 20 18 37 37 H 1.08997 * 113.61390 * 334.55838 * 25 20 18 38 38 H 1.08998 * 113.61675 * 105.38650 * 25 20 18 39 39 H 1.08002 * 119.91061 * 179.74435 * 26 12 11 40 40 H 1.08003 * 120.08532 * 180.25599 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4969 2.6200 0.8027 6 1 3.5890 1.4120 0.5920 7 6 2.0083 -1.2117 -0.0005 8 1 2.9622 -1.2842 -0.5015 9 6 1.4671 -2.3392 0.6537 10 6 1.8852 -3.6353 0.2930 11 6 1.3575 -4.7199 0.9293 12 6 0.4058 -4.5485 1.9345 13 7 -0.1287 -5.6610 2.5791 14 6 0.6565 -6.7204 2.8575 15 8 1.8134 -6.7300 2.4938 16 6 0.0968 -7.8930 3.6210 17 8 1.1314 -8.8975 3.7919 18 6 0.7931 -10.0139 4.4560 19 8 -0.3301 -10.1471 4.8808 20 6 1.8145 -11.1005 4.6726 21 6 1.2705 -12.3116 5.4487 22 6 2.0783 -13.1961 4.4844 23 9 3.3850 -13.4475 4.9160 24 9 1.4029 -14.3556 4.0885 25 6 1.9749 -12.0440 3.4689 26 6 -0.0173 -3.2688 2.2931 27 6 0.5052 -2.1743 1.6695 28 1 -0.4849 0.8400 -0.0004 29 1 2.6217 -3.7695 -0.4854 30 1 1.6767 -5.7142 0.6536 31 1 -1.0662 -5.6734 2.8279 32 1 -0.7379 -8.3223 3.0669 33 1 -0.2499 -7.5581 4.5985 34 1 2.7598 -10.7215 5.0609 35 1 1.6176 -12.3605 6.4807 36 1 0.1917 -12.4392 5.3584 37 1 1.0888 -12.0995 2.8365 38 1 2.8902 -11.8761 2.9013 39 1 -0.7577 -3.1442 3.0695 40 1 0.1795 -1.1838 1.9512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754129560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:45 Heat of formation + Delta-G solvation = -172.437141 kcal Electronic energy + Delta-G solvation = -27528.471620 eV Core-core repulsion = 22944.871038 eV Total energy + Delta-G solvation = -4583.600582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.28936 -47.61935 -41.14669 -39.67581 -38.14417 -37.26364 -36.43301 -34.54377 -33.15628 -30.09924 -29.58311 -28.58940 -26.87276 -26.76849 -24.77175 -22.33110 -21.70063 -20.85287 -20.38782 -19.86837 -18.78651 -17.76419 -17.49867 -17.34165 -17.13359 -16.97650 -16.52905 -16.12539 -15.93378 -15.25844 -15.13418 -14.59927 -14.47749 -14.15375 -13.98708 -13.88440 -13.50347 -13.23215 -13.06063 -12.87291 -12.69582 -12.40834 -12.16086 -12.13129 -12.05600 -12.02927 -11.53225 -11.20316 -11.03490 -11.02706 -11.00817 -10.87956 -10.59677 -10.23971 -9.82714 -9.54779 -9.15430 -8.78556 -7.62078 -7.23472 -6.95889 -4.34096 1.69718 2.00079 2.45895 2.86648 2.89094 3.01302 3.03386 3.07278 3.16802 3.24720 3.54778 3.61412 3.67307 3.84387 3.96495 4.42845 4.48280 4.68779 4.77146 4.82611 4.85330 4.91175 4.94861 5.05096 5.11702 5.49047 5.60645 5.98642 6.12074 6.34650 6.66668 6.85942 6.93428 7.05650 7.20326 7.30007 7.49019 7.59486 7.79917 7.95248 8.15137 8.18819 8.47342 8.61058 8.77335 8.91325 9.95383 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.001716 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.847709 B =16314.937317 C =16747.867144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.224 4.224 11 C -0.063 4.063 12 C -0.027 4.027 13 N -0.641 5.641 14 C 0.497 3.503 15 O -0.511 6.511 16 C 0.051 3.949 17 O -0.323 6.323 18 C 0.477 3.523 19 O -0.503 6.503 20 C -0.104 4.104 21 C -0.146 4.146 22 C 0.259 3.741 23 F -0.174 7.174 24 F -0.184 7.184 25 C -0.148 4.148 26 C -0.098 4.098 27 C -0.172 4.172 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 -18.739 9.272 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.119 4.119 13 N -0.286 5.286 14 C 0.282 3.718 15 O -0.386 6.386 16 C -0.027 4.027 17 O -0.237 6.237 18 C 0.320 3.680 19 O -0.391 6.391 20 C -0.123 4.123 21 C -0.184 4.184 22 C 0.222 3.778 23 F -0.155 7.155 24 F -0.165 7.165 25 C -0.186 4.186 26 C -0.119 4.119 27 C -0.191 4.191 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.995 -18.666 9.116 20.797 hybrid contribution -0.320 0.726 0.202 0.819 sum -1.315 -17.940 9.318 20.258 Atomic orbital electron populations 1.69939 1.08109 1.29990 1.30930 1.25966 0.94387 1.01615 0.91493 0.86489 0.81531 0.80697 0.79266 1.19406 1.19847 1.18036 1.19536 1.05387 0.93723 1.30365 0.89895 1.17615 0.89622 0.91877 0.89813 1.20599 1.07114 0.92275 1.04445 1.20300 0.96243 0.98051 0.93735 1.16990 1.07943 0.84463 1.02487 1.42718 1.11960 1.15740 1.58190 1.19885 0.86842 0.83758 0.81359 1.90742 1.16960 1.79381 1.51557 1.22799 0.89812 0.87671 1.02402 1.86569 1.41999 1.26765 1.68380 1.23093 0.88178 0.82139 0.74623 1.90689 1.22002 1.79120 1.47266 1.22226 0.99593 0.91150 0.99341 1.24117 1.03361 0.90506 1.00388 1.21821 0.77357 0.81624 0.96965 1.93051 1.36982 1.95081 1.90399 1.93041 1.79112 1.52924 1.91433 1.24089 1.07182 0.90635 0.96740 1.20157 1.00592 0.91471 0.99632 1.20622 1.02556 0.96656 0.99315 0.90503 0.88629 0.87949 0.77014 0.88267 0.88136 0.83969 0.87550 0.85364 0.86232 0.86927 0.89164 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.90 11.78 55.55 0.65 -18.25 16 2 C 0.09 2.11 4.77 -17.33 -0.08 2.03 16 3 Si 0.90 17.80 29.66 -169.99 -5.04 12.76 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.96 8.94 -37.85 -0.34 -12.30 16 8 H 0.08 2.08 8.01 -52.49 -0.42 1.66 16 9 C 0.11 2.97 5.57 -106.80 -0.60 2.38 16 10 C -0.22 -5.60 9.74 -39.26 -0.38 -5.98 16 11 C -0.06 -1.49 8.59 -39.79 -0.34 -1.83 16 12 C -0.03 -0.59 6.25 -83.57 -0.52 -1.11 16 13 N -0.64 -10.64 5.30 -9.74 -0.05 -10.69 16 14 C 0.50 8.20 7.72 -10.99 -0.08 8.12 16 15 O -0.51 -10.72 14.12 -14.10 -0.20 -10.92 16 16 C 0.05 0.60 5.95 36.01 0.21 0.81 16 17 O -0.32 -4.05 9.76 -45.90 -0.45 -4.50 16 18 C 0.48 4.90 7.48 36.01 0.27 5.17 16 19 O -0.50 -5.96 15.65 -18.75 -0.29 -6.25 16 20 C -0.10 -0.74 4.24 -90.96 -0.39 -1.12 16 21 C -0.15 -0.90 7.19 -25.92 -0.19 -1.09 16 22 C 0.26 1.87 3.28 -25.85 -0.08 1.78 16 23 F -0.17 -1.46 17.39 2.25 0.04 -1.42 16 24 F -0.18 -1.62 17.41 2.25 0.04 -1.58 16 25 C -0.15 -0.95 7.42 -25.84 -0.19 -1.15 16 26 C -0.10 -2.17 9.90 -39.79 -0.39 -2.57 16 27 C -0.17 -4.27 8.74 -39.26 -0.34 -4.62 16 28 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 29 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.10 2.37 6.45 -52.49 -0.34 2.03 16 31 H 0.40 4.97 8.82 -40.82 -0.36 4.61 16 32 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.13 0.84 7.43 -51.93 -0.39 0.45 16 37 H 0.12 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.11 2.72 6.52 -52.48 -0.34 2.38 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -31.38 358.60 -7.71 -39.09 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.36 Total: 7.84 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.45 Total: -11.48 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.60 Total: -28.93 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.94 Total: -21.67 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.04 Total: 12.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.38 -7.71 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754129560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.351 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds