Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48503 * 109.47214 * 274.98560 * 3 2 1 5 5 H 1.48499 * 109.47026 * 34.98207 * 3 2 1 6 6 H 1.48501 * 109.47258 * 154.98558 * 3 2 1 7 7 C 1.39912 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00061 * 147.61431 * 7 2 1 9 9 C 1.41149 * 119.99617 * 327.61241 * 7 2 1 10 10 C 1.40877 * 120.16216 * 157.94667 * 9 7 2 11 11 C 1.36372 * 119.82948 * 180.02562 * 10 9 7 12 12 C 1.39489 * 120.16718 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82843 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99813 * 37.76465 * 13 12 11 15 15 O 1.21276 * 120.00540 * 356.69841 * 14 13 12 16 16 C 1.50703 * 119.99425 * 176.69604 * 14 13 12 17 17 O 1.45208 * 109.46991 * 179.97438 * 16 14 13 18 18 C 1.34230 * 116.99983 * 180.02562 * 17 16 14 19 19 O 1.20820 * 119.99932 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.99930 * 180.02562 * 18 17 16 21 21 C 1.53781 * 113.61527 * 180.02562 * 20 18 17 22 22 C 1.53775 * 87.17379 * 139.93791 * 21 20 18 23 23 F 1.39895 * 113.61832 * 89.15532 * 22 21 20 24 24 F 1.39903 * 113.61403 * 220.05929 * 22 21 20 25 25 C 1.53784 * 113.61135 * 277.49891 * 20 18 17 26 26 C 1.39477 * 120.33157 * 0.25384 * 12 11 10 27 27 C 1.36374 * 120.17153 * 359.48503 * 26 12 11 28 28 H 0.96996 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.08280 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.91675 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99680 * 217.75549 * 13 12 11 32 32 H 1.08996 * 109.47214 * 60.00119 * 16 14 13 33 33 H 1.08995 * 109.47214 * 299.99884 * 16 14 13 34 34 H 1.08996 * 112.85129 * 48.79688 * 20 18 17 35 35 H 1.08999 * 113.60940 * 254.53047 * 21 20 18 36 36 H 1.09004 * 113.61198 * 25.34442 * 21 20 18 37 37 H 1.08997 * 113.61390 * 334.55838 * 25 20 18 38 38 H 1.08998 * 113.61675 * 105.38650 * 25 20 18 39 39 H 1.08002 * 119.91061 * 179.74435 * 26 12 11 40 40 H 1.08003 * 120.08532 * 180.25599 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4969 2.6200 0.8027 6 1 3.5890 1.4120 0.5920 7 6 2.0083 -1.2117 -0.0005 8 1 2.9622 -1.2842 -0.5015 9 6 1.4671 -2.3392 0.6537 10 6 1.8852 -3.6353 0.2930 11 6 1.3575 -4.7199 0.9293 12 6 0.4058 -4.5485 1.9345 13 7 -0.1287 -5.6610 2.5791 14 6 0.6565 -6.7204 2.8575 15 8 1.8134 -6.7300 2.4938 16 6 0.0968 -7.8930 3.6210 17 8 1.1314 -8.8975 3.7919 18 6 0.7931 -10.0139 4.4560 19 8 -0.3301 -10.1471 4.8808 20 6 1.8145 -11.1005 4.6726 21 6 1.2705 -12.3116 5.4487 22 6 2.0783 -13.1961 4.4844 23 9 3.3850 -13.4475 4.9160 24 9 1.4029 -14.3556 4.0885 25 6 1.9749 -12.0440 3.4689 26 6 -0.0173 -3.2688 2.2931 27 6 0.5052 -2.1743 1.6695 28 1 -0.4849 0.8400 -0.0004 29 1 2.6217 -3.7695 -0.4854 30 1 1.6767 -5.7142 0.6536 31 1 -1.0662 -5.6734 2.8279 32 1 -0.7379 -8.3223 3.0669 33 1 -0.2499 -7.5581 4.5985 34 1 2.7598 -10.7215 5.0609 35 1 1.6176 -12.3605 6.4807 36 1 0.1917 -12.4392 5.3584 37 1 1.0888 -12.0995 2.8365 38 1 2.8902 -11.8761 2.9013 39 1 -0.7577 -3.1442 3.0695 40 1 0.1795 -1.1838 1.9512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754129560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = -189.238849 kcal Electronic energy + Delta-G solvation = -27529.200197 eV Core-core repulsion = 22944.871038 eV Total energy + Delta-G solvation = -4584.329159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.89502 -48.23951 -42.00664 -41.07451 -39.21387 -38.59090 -37.33121 -36.20313 -34.85824 -31.61602 -31.36528 -29.95048 -27.63828 -27.36303 -26.40426 -23.61354 -22.96136 -22.49792 -21.39914 -20.99036 -19.53693 -19.30071 -18.84601 -18.24325 -17.92706 -17.75867 -17.65666 -17.17874 -17.00629 -16.78211 -16.22062 -15.77414 -15.51147 -15.24038 -15.10060 -14.99438 -14.52325 -14.46193 -14.10535 -14.01525 -13.93027 -13.80737 -13.71520 -13.32098 -13.08847 -12.84915 -12.70874 -12.68484 -12.57417 -12.33999 -11.94005 -11.92469 -11.68929 -11.60336 -11.53304 -11.17735 -10.81313 -10.50609 -9.49017 -9.04159 -8.74878 -6.24840 0.77627 0.92606 1.13002 1.15141 1.36177 1.41307 1.53784 1.70352 2.19456 2.29109 2.45169 2.62912 2.64938 3.06077 3.12374 3.34496 3.58324 3.70406 3.79673 4.04287 4.06379 4.17963 4.27948 4.38111 4.38884 4.47693 4.58487 4.66975 4.89472 4.98342 5.08856 5.13295 5.18117 5.25585 5.41268 5.63045 5.84800 6.00244 6.06871 6.33974 6.47985 6.60231 6.66717 6.88016 6.96905 7.31104 8.18971 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.001716 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.847709 B =16314.937317 C =16747.867144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.052 3.948 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.075 4.075 12 C -0.011 4.011 13 N -0.634 5.634 14 C 0.499 3.501 15 O -0.559 6.559 16 C 0.059 3.941 17 O -0.343 6.343 18 C 0.482 3.518 19 O -0.518 6.518 20 C -0.103 4.103 21 C -0.137 4.137 22 C 0.254 3.746 23 F -0.182 7.182 24 F -0.195 7.195 25 C -0.146 4.146 26 C -0.096 4.096 27 C -0.191 4.191 28 H 0.295 0.705 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.420 0.580 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -19.279 10.803 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.168 4.168 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.266 4.266 11 C -0.095 4.095 12 C -0.104 4.104 13 N -0.281 5.281 14 C 0.286 3.714 15 O -0.437 6.437 16 C -0.018 4.018 17 O -0.258 6.258 18 C 0.326 3.674 19 O -0.407 6.407 20 C -0.122 4.122 21 C -0.175 4.175 22 C 0.218 3.782 23 F -0.162 7.162 24 F -0.176 7.176 25 C -0.184 4.184 26 C -0.116 4.116 27 C -0.210 4.210 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.258 0.742 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.175 0.825 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.987 -19.237 10.663 22.084 hybrid contribution -0.076 0.710 -0.235 0.752 sum -2.063 -18.527 10.427 21.360 Atomic orbital electron populations 1.69932 1.09334 1.31525 1.31141 1.26723 0.95098 1.04428 0.90525 0.85375 0.79653 0.76188 0.79668 1.18453 1.18451 1.18576 1.19722 1.05767 0.95292 1.32269 0.90684 1.17931 0.90729 0.92397 0.90838 1.20728 1.07920 0.92764 1.05192 1.20422 0.97032 0.97520 0.94508 1.17042 1.06218 0.86032 1.01113 1.42598 1.13308 1.14508 1.57654 1.20674 0.86079 0.84326 0.80328 1.90730 1.19244 1.80377 1.53367 1.22745 0.89716 0.86059 1.03240 1.86567 1.42632 1.27549 1.69052 1.23549 0.88493 0.81726 0.73655 1.90684 1.22818 1.79290 1.47890 1.22357 0.99461 0.90352 1.00001 1.24102 1.03084 0.89262 1.01039 1.21967 0.77095 0.81355 0.97784 1.93037 1.37556 1.95135 1.90522 1.93019 1.79329 1.53619 1.91610 1.24129 1.07841 0.89783 0.96618 1.20448 1.00640 0.90793 0.99715 1.20658 1.03247 0.97264 0.99874 0.89412 0.88992 0.87941 0.74237 0.85454 0.85497 0.82472 0.85910 0.85525 0.85785 0.86166 0.85566 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.69 11.78 21.82 0.26 -39.44 16 2 C 0.05 2.55 4.77 85.24 0.41 2.96 16 3 Si 0.97 36.76 29.66 68.60 2.03 38.79 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -27.07 8.94 23.39 0.21 -26.86 16 8 H 0.08 3.97 8.01 -2.91 -0.02 3.95 16 9 C 0.08 4.54 5.57 -21.27 -0.12 4.42 16 10 C -0.25 -12.79 9.74 22.48 0.22 -12.57 16 11 C -0.07 -3.57 8.59 22.14 0.19 -3.38 16 12 C -0.01 -0.47 6.25 38.56 0.24 -0.23 16 13 N -0.63 -19.52 5.30 -303.11 -1.61 -21.12 16 14 C 0.50 15.47 7.72 87.66 0.68 16.15 16 15 O -0.56 -23.12 14.12 15.78 0.22 -22.89 16 16 C 0.06 1.22 5.95 71.24 0.42 1.64 16 17 O -0.34 -7.82 9.76 -45.06 -0.44 -8.26 16 18 C 0.48 8.73 7.48 71.24 0.53 9.26 16 19 O -0.52 -10.88 15.65 21.98 0.34 -10.53 16 20 C -0.10 -1.23 4.24 -11.01 -0.05 -1.28 16 21 C -0.14 -1.41 7.19 31.12 0.22 -1.18 16 22 C 0.25 3.27 3.28 31.17 0.10 3.37 16 23 F -0.18 -2.78 17.39 44.97 0.78 -2.00 16 24 F -0.19 -3.21 17.41 44.97 0.78 -2.43 16 25 C -0.15 -1.61 7.42 31.17 0.23 -1.38 16 26 C -0.10 -4.14 9.90 22.13 0.22 -3.92 16 27 C -0.19 -9.62 8.74 22.48 0.20 -9.43 16 28 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 29 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.10 4.83 6.45 -2.91 -0.02 4.81 16 31 H 0.42 9.06 8.82 -92.71 -0.82 8.24 16 32 H 0.13 1.97 8.13 -2.39 -0.02 1.95 16 33 H 0.13 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.13 1.39 7.43 -2.38 -0.02 1.37 16 37 H 0.12 1.27 8.09 -2.39 -0.02 1.25 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.10 5.08 6.52 -2.91 -0.02 5.06 16 Total: -1.00 -69.92 358.60 6.38 -63.54 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.29 Total: 26.76 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.71 Total: -22.42 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.35 Total: -60.56 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: 0.13 Total: -41.68 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.56 Total: -4.43 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -69.92 6.38 -63.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754129560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.700 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds