Wall clock time and date at job start Tue Mar 31 2020 22:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 119.99742 * 2 1 4 4 H 1.48504 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47589 * 300.00050 * 3 2 1 6 6 H 1.48496 * 109.47349 * 60.00147 * 3 2 1 7 7 C 1.38650 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00575 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99602 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99870 * 185.05214 * 9 7 2 11 11 C 1.38876 * 120.06594 * 354.46602 * 10 9 7 12 12 C 1.38101 * 119.93334 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06373 * 0.02631 * 12 11 10 14 14 C 1.50701 * 119.93024 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.47301 * 89.99416 * 14 13 12 16 16 C 1.34779 * 120.00388 * 179.97438 * 15 14 13 17 17 O 1.21563 * 119.99683 * 0.02562 * 16 15 14 18 18 C 1.47720 * 120.00143 * 180.02562 * 16 15 14 19 19 C 1.40121 * 120.35254 * 0.02562 * 18 16 15 20 20 N 1.31251 * 121.14914 * 179.70133 * 19 18 16 21 21 C 1.32723 * 121.80300 * 0.02562 * 20 19 18 22 22 N 1.37111 * 133.40521 * 179.97438 * 21 20 19 23 23 H 0.97000 * 126.59307 * 0.02606 * 22 21 20 24 24 N 1.40185 * 106.81889 * 180.02562 * 22 21 20 25 25 N 1.28664 * 109.51304 * 359.97438 * 24 22 21 26 26 C 1.35333 * 109.99620 * 359.97438 * 25 24 22 27 27 C 1.39433 * 120.34894 * 179.72280 * 18 16 15 28 28 C 1.38303 * 120.14035 * 0.24785 * 13 12 11 29 29 C 1.38100 * 120.06404 * 359.45292 * 28 13 12 30 30 H 0.97004 * 120.00318 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.03928 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.97343 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.47326 * 329.99715 * 14 13 12 34 34 H 1.09003 * 109.47055 * 209.99855 * 14 13 12 35 35 H 0.97002 * 120.00025 * 0.02562 * 15 14 13 36 36 H 1.08004 * 119.42440 * 359.73013 * 19 18 16 37 37 H 1.07994 * 120.95436 * 0.25858 * 27 18 16 38 38 H 1.08002 * 119.96649 * 179.70732 * 28 13 12 39 39 H 1.08009 * 120.03109 * 180.27892 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4571 -3.4394 0.0951 12 6 4.2024 -4.5970 0.2036 13 6 3.5685 -5.8203 0.3242 14 6 4.3847 -7.0817 0.4419 15 7 4.6555 -7.3581 1.8548 16 6 5.3739 -8.4439 2.2035 17 8 5.7975 -9.1936 1.3455 18 6 5.6464 -8.7229 3.6283 19 6 5.1613 -7.8640 4.6234 20 7 5.3892 -8.1000 5.8942 21 6 6.0858 -9.1560 6.2955 22 7 6.4600 -9.6247 7.5285 23 1 6.2559 -9.2214 8.3868 24 7 7.1943 -10.7988 7.3104 25 7 7.2652 -11.0329 6.0473 26 6 6.6083 -10.0695 5.3604 27 6 6.3839 -9.8472 3.9975 28 6 2.1872 -5.8891 0.3313 29 6 1.4365 -4.7344 0.2293 30 1 -0.4851 0.8401 0.0004 31 1 3.9527 -2.4845 -0.0003 32 1 5.2811 -4.5471 0.1936 33 1 5.3274 -6.9556 -0.0908 34 1 3.8311 -7.9145 0.0083 35 1 4.3172 -6.7601 2.5395 36 1 4.5894 -6.9928 4.3397 37 1 6.7700 -10.5274 3.2528 38 1 1.6952 -6.8463 0.4208 39 1 0.3578 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755234491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:19 Heat of formation + Delta-G solvation = 67.839510 kcal Electronic energy + Delta-G solvation = -26531.406536 eV Core-core repulsion = 22441.207069 eV Total energy + Delta-G solvation = -4090.199467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.56588 -41.21255 -40.67743 -39.35924 -38.42265 -35.76825 -35.18928 -34.26280 -32.92809 -32.34021 -31.76607 -30.95051 -27.74818 -26.76132 -25.86593 -24.99671 -23.88698 -23.59231 -22.19213 -21.96563 -19.92115 -19.85672 -19.70341 -18.84626 -18.18573 -17.71434 -17.32752 -16.63793 -16.58914 -16.30577 -15.97685 -15.85622 -15.49559 -15.21608 -14.96307 -14.74693 -14.45128 -14.30817 -14.30427 -14.08505 -13.75903 -13.63943 -13.26620 -13.17443 -13.01221 -12.70246 -12.55476 -12.30805 -12.18724 -12.07731 -11.47407 -11.15312 -10.82289 -10.72551 -10.55591 -10.36497 -10.00568 -9.74957 -8.96797 -8.46163 -6.13859 -0.98925 -0.58250 0.58480 0.63896 0.84602 0.87556 1.37876 1.44567 1.55216 1.63774 2.05574 2.18706 2.50112 2.68116 2.87924 3.04251 3.06587 3.21451 3.42741 3.53333 3.56708 3.77557 3.93657 4.09874 4.14568 4.23541 4.49436 4.53207 4.62791 4.64545 4.84200 4.87172 4.93913 5.10486 5.18673 5.32723 5.37077 5.58388 5.62961 5.74544 5.80446 6.04966 6.22085 6.28094 6.49617 6.55517 6.99299 7.12625 7.79641 8.76838 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.001964 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.541392 B =14252.829284 C =15159.177290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.016 2.984 4 H -0.250 1.250 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.410 4.410 8 H 0.105 0.895 9 O -0.231 6.231 10 C 0.122 3.878 11 C -0.245 4.245 12 C -0.043 4.043 13 C -0.182 4.182 14 C 0.184 3.816 15 N -0.704 5.704 16 C 0.574 3.426 17 O -0.568 6.568 18 C -0.202 4.202 19 C 0.226 3.774 20 N -0.494 5.494 21 C 0.288 3.712 22 N -0.466 5.466 23 H 0.469 0.531 24 N 0.011 4.989 25 N -0.211 5.211 26 C -0.088 4.088 27 C 0.084 3.916 28 C -0.041 4.041 29 C -0.206 4.206 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.210 0.790 37 H 0.170 0.830 38 H 0.150 0.850 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.598 -16.277 11.308 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.173 1.173 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.486 4.486 8 H 0.122 0.878 9 O -0.137 6.137 10 C 0.071 3.929 11 C -0.264 4.264 12 C -0.062 4.062 13 C -0.183 4.183 14 C 0.062 3.938 15 N -0.356 5.356 16 C 0.361 3.639 17 O -0.448 6.448 18 C -0.211 4.211 19 C 0.052 3.948 20 N -0.208 5.208 21 C 0.043 3.957 22 N -0.193 5.193 23 H 0.320 0.680 24 N 0.028 4.972 25 N -0.092 5.092 26 C -0.214 4.214 27 C 0.054 3.946 28 C -0.060 4.060 29 C -0.225 4.225 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.251 0.749 36 H 0.226 0.774 37 H 0.188 0.812 38 H 0.168 0.832 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.997 -17.294 12.016 24.747 hybrid contribution -0.596 1.788 -0.197 1.896 sum 12.401 -15.506 11.819 23.106 Atomic orbital electron populations 1.70185 1.08003 1.28704 1.48857 1.26555 0.96806 1.02744 0.95982 0.84549 0.78387 0.75037 0.78407 1.17291 1.19689 1.19487 1.21856 0.92562 0.81316 1.52837 0.87799 1.83951 1.36153 1.12724 1.80893 1.20032 0.91708 0.87927 0.93253 1.21250 0.92950 1.00189 1.12032 1.20973 0.99922 0.90630 0.94667 1.19480 0.93355 0.94102 1.11357 1.19981 0.98837 0.93749 0.81244 1.46023 1.53789 1.26111 1.09689 1.17766 0.78077 0.80983 0.87093 1.90810 1.53148 1.48945 1.51859 1.20643 1.06406 0.99194 0.94850 1.23595 0.90155 0.96495 0.84558 1.66821 1.16711 1.17548 1.19766 1.19779 0.95499 0.93051 0.87408 1.47560 1.43016 1.20915 1.07850 0.67971 1.81701 1.08536 0.97100 1.09832 1.74893 1.14797 1.20739 0.98790 1.20561 1.07486 0.97055 0.96339 1.21177 0.87640 0.93634 0.92184 1.20915 0.93126 0.96935 0.94997 1.20463 1.00060 0.90487 1.11517 0.91896 0.86412 0.84030 0.90373 0.90126 0.74946 0.77389 0.81234 0.83216 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 13.67 21.61 0.30 -54.24 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 3 Si 1.02 41.00 29.55 68.60 2.03 43.03 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.41 -22.54 9.49 67.92 0.64 -21.90 16 8 H 0.10 5.19 5.20 -2.91 -0.02 5.18 16 9 O -0.23 -13.06 9.76 -22.84 -0.22 -13.29 16 10 C 0.12 5.46 6.65 22.57 0.15 5.61 16 11 C -0.24 -9.32 9.17 22.39 0.21 -9.11 16 12 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 13 C -0.18 -4.34 5.25 -19.83 -0.10 -4.45 16 14 C 0.18 3.40 5.80 85.63 0.50 3.90 16 15 N -0.70 -10.68 5.50 -469.82 -2.58 -13.26 16 16 C 0.57 10.25 7.77 86.75 0.67 10.92 16 17 O -0.57 -14.21 16.39 -3.91 -0.06 -14.28 16 18 C -0.20 -2.96 5.88 -20.03 -0.12 -3.08 16 19 C 0.23 2.71 10.69 85.24 0.91 3.62 16 20 N -0.49 -7.58 10.37 -191.98 -1.99 -9.57 16 21 C 0.29 4.79 8.49 134.01 1.14 5.93 16 22 N -0.47 -6.24 7.52 -55.37 -0.42 -6.66 16 23 H 0.47 2.97 8.96 -213.27 -1.91 1.06 16 24 N 0.01 0.20 13.82 37.02 0.51 0.71 16 25 N -0.21 -4.30 12.40 -52.14 -0.65 -4.95 16 26 C -0.09 -1.63 7.27 39.63 0.29 -1.34 16 27 C 0.08 1.38 9.75 22.96 0.22 1.60 16 28 C -0.04 -1.11 9.69 22.25 0.22 -0.89 16 29 C -0.21 -7.63 9.99 22.39 0.22 -7.41 16 30 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.12 4.66 5.64 -2.91 -0.02 4.65 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.08 1.46 8.08 -2.38 -0.02 1.44 16 34 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.41 4.56 6.50 -92.71 -0.60 3.96 16 36 H 0.21 1.16 6.39 -2.91 -0.02 1.14 16 37 H 0.17 2.60 7.71 -2.91 -0.02 2.58 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -74.59 350.46 1.19 -73.39 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -1.35 Total: 17.48 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 5.63 Total: -18.38 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -4.83 Total: -87.96 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.29 Total: -27.56 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -74.59 1.19 -73.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755234491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.230 kcal (2) G-P(sol) polarization free energy of solvation -74.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds