Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 119.99809 * 2 1 4 4 H 1.48493 * 109.47047 * 239.99940 * 3 2 1 5 5 H 1.48499 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46749 * 120.00303 * 3 2 1 7 7 C 1.38653 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00389 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99867 * 185.05717 * 9 7 2 11 11 C 1.38883 * 120.06751 * 354.46282 * 10 9 7 12 12 C 1.38096 * 119.93043 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06886 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.93285 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46781 * 90.00102 * 14 13 12 16 16 C 1.34778 * 119.99811 * 180.02562 * 15 14 13 17 17 O 1.21580 * 119.99982 * 359.97438 * 16 15 14 18 18 C 1.47696 * 120.00255 * 180.02562 * 16 15 14 19 19 C 1.41601 * 120.02954 * 359.97438 * 18 16 15 20 20 C 1.35777 * 119.54558 * 180.02562 * 19 18 16 21 21 C 1.40854 * 119.39326 * 359.97438 * 20 19 18 22 22 N 1.32490 * 133.41738 * 180.02562 * 21 20 19 23 23 N 1.28535 * 110.24321 * 179.97438 * 22 21 20 24 24 N 1.28984 * 110.84213 * 359.97438 * 23 22 21 25 25 N 1.36933 * 119.93480 * 0.02562 * 21 20 19 26 26 C 1.35501 * 120.83968 * 0.02562 * 25 21 20 27 27 C 1.38306 * 120.13848 * 0.25807 * 13 12 11 28 28 C 1.38098 * 120.06428 * 359.44567 * 27 13 12 29 29 H 0.96999 * 120.00072 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.03363 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.97002 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.46629 * 330.00763 * 14 13 12 33 33 H 1.08995 * 109.47263 * 210.00507 * 14 13 12 34 34 H 0.97003 * 120.00402 * 0.02562 * 15 14 13 35 35 H 1.08005 * 120.22390 * 0.04452 * 19 18 16 36 36 H 1.08004 * 120.30206 * 180.02562 * 20 19 18 37 37 H 1.07995 * 119.82073 * 179.97438 * 26 25 21 38 38 H 1.07992 * 119.96625 * 179.70627 * 27 13 12 39 39 H 1.08004 * 120.03308 * 180.27829 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0920 12 6 4.2025 -4.5971 0.1996 13 6 3.5688 -5.8205 0.3202 14 6 4.3851 -7.0819 0.4368 15 7 4.6567 -7.3588 1.8495 16 6 5.3762 -8.4442 2.1971 17 8 5.7993 -9.1937 1.3384 18 6 5.6496 -8.7238 3.6214 19 6 5.1567 -7.8516 4.6221 20 6 5.4143 -8.1178 5.9284 21 6 6.1681 -9.2588 6.2658 22 7 6.5746 -9.7741 7.4167 23 7 7.2490 -10.8485 7.2095 24 7 7.3285 -11.1043 5.9478 25 7 6.6336 -10.0866 5.2793 26 6 6.3793 -9.8237 3.9745 27 6 2.1875 -5.8892 0.3281 28 6 1.4367 -4.7345 0.2270 29 1 -0.4850 0.8400 0.0004 30 1 3.9527 -2.4844 -0.0025 31 1 5.2813 -4.5471 0.1896 32 1 5.3274 -6.9554 -0.0964 33 1 3.8312 -7.9145 0.0032 34 1 4.3188 -6.7611 2.5346 35 1 4.5794 -6.9809 4.3482 36 1 5.0439 -7.4610 6.7017 37 1 6.7548 -10.4874 3.2099 38 1 1.6955 -6.8464 0.4176 39 1 0.3581 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758208674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = 116.678131 kcal Electronic energy + Delta-G solvation = -26597.741450 eV Core-core repulsion = 22509.659784 eV Total energy + Delta-G solvation = -4088.081666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.91445 -40.60850 -39.30058 -38.56349 -37.02542 -35.07149 -34.46272 -32.80916 -32.43382 -31.09920 -30.42917 -30.08842 -26.70865 -25.66154 -24.97938 -24.50453 -23.33388 -22.19268 -21.55763 -20.84499 -19.38915 -18.24305 -18.11490 -18.03085 -17.39575 -17.09152 -16.25402 -15.65213 -15.60221 -15.19555 -14.77857 -14.67916 -14.38414 -14.13237 -13.96596 -13.84532 -13.63947 -13.46061 -13.00442 -12.94096 -12.90266 -12.38919 -12.28029 -12.18254 -11.79894 -11.56528 -11.53075 -11.09973 -10.94158 -10.83909 -10.70890 -10.59175 -10.51704 -9.55876 -9.38524 -9.17979 -9.01091 -8.42697 -7.47037 -6.62831 -4.22056 -0.43015 -0.11707 1.06346 1.45145 1.88557 1.99756 2.14739 2.84696 2.85965 3.02571 3.03524 3.06581 3.09772 3.55093 3.80202 3.81844 3.99072 4.25723 4.33187 4.41011 4.74598 4.91177 4.99032 4.99563 5.05701 5.08470 5.14357 5.23675 5.36995 5.50663 5.63960 5.66588 5.72043 5.99397 6.09967 6.20899 6.46018 6.66529 6.81899 6.99278 7.11614 7.16629 7.23470 7.57898 7.73914 7.81150 7.83915 8.82072 9.48599 10.54131 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.001954 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.024317 B =14329.062267 C =15190.951809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.161 3.839 11 C -0.238 4.238 12 C -0.049 4.049 13 C -0.223 4.223 14 C 0.179 3.821 15 N -0.707 5.707 16 C 0.566 3.434 17 O -0.533 6.533 18 C -0.148 4.148 19 C -0.033 4.033 20 C -0.091 4.091 21 C 0.251 3.749 22 N -0.322 5.322 23 N -0.003 5.003 24 N -0.103 5.103 25 N -0.307 5.307 26 C 0.177 3.823 27 C -0.053 4.053 28 C -0.196 4.196 29 H 0.273 0.727 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.403 0.597 35 H 0.165 0.835 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.113 0.887 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -12.891 6.993 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.067 4.067 13 C -0.224 4.224 14 C 0.058 3.942 15 N -0.358 5.358 16 C 0.351 3.649 17 O -0.411 6.411 18 C -0.157 4.157 19 C -0.060 4.060 20 C -0.114 4.114 21 C -0.003 4.003 22 N -0.181 5.181 23 N 0.004 4.996 24 N -0.086 5.086 25 N -0.085 5.085 26 C 0.047 3.953 27 C -0.071 4.071 28 C -0.215 4.215 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.239 0.761 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.214 0.786 38 H 0.131 0.869 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.682 -14.299 7.322 18.757 hybrid contribution -0.058 1.683 -0.380 1.726 sum 9.625 -12.617 6.942 17.321 Atomic orbital electron populations 1.70020 1.06036 1.28157 1.44811 1.25337 0.95877 0.99005 0.96195 0.85756 0.78755 0.79518 0.79309 1.19373 1.20154 1.19373 1.21317 0.91863 0.80653 1.53260 0.88881 1.83979 1.34582 1.11618 1.77043 1.19458 0.90336 0.88065 0.91521 1.21164 0.93766 0.99012 1.11765 1.20644 0.98391 0.91596 0.96119 1.19135 0.93522 0.93389 1.16374 1.20097 0.98997 0.95374 0.79726 1.46275 1.53342 1.25726 1.10441 1.17517 0.79265 0.81946 0.86221 1.90847 1.51859 1.47816 1.50575 1.19804 1.03238 0.96613 0.96062 1.21541 0.95059 0.98254 0.91116 1.20367 0.98691 0.94313 0.98040 1.23158 0.97261 0.94749 0.85136 1.75213 1.16781 1.06396 1.19724 1.77907 1.07366 1.06680 1.07692 1.82898 1.18300 1.07574 0.99863 1.48846 1.33470 1.18236 1.07939 1.21745 0.93884 0.96916 0.82730 1.20531 0.92703 0.96854 0.97056 1.20226 0.99748 0.90232 1.11297 0.91696 0.85371 0.87328 0.90965 0.90918 0.76067 0.81767 0.80694 0.78624 0.86891 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.57 13.67 55.48 0.76 -22.81 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.04 29.55 -169.99 -5.02 14.01 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.40 -10.15 9.49 30.89 0.29 -9.85 16 8 H 0.09 2.18 5.20 -52.49 -0.27 1.91 16 9 O -0.17 -4.44 9.76 0.04 0.00 -4.44 16 10 C 0.16 3.43 6.65 -39.11 -0.26 3.17 16 11 C -0.24 -4.42 9.17 -39.39 -0.36 -4.78 16 12 C -0.05 -0.72 9.69 -39.61 -0.38 -1.10 16 13 C -0.22 -2.93 5.25 -104.57 -0.55 -3.48 16 14 C 0.18 1.90 5.80 -5.19 -0.03 1.87 16 15 N -0.71 -6.00 5.50 -62.48 -0.34 -6.34 16 16 C 0.57 5.12 7.77 -12.40 -0.10 5.03 16 17 O -0.53 -6.59 16.28 5.30 0.09 -6.50 16 18 C -0.15 -1.02 5.84 -105.33 -0.62 -1.63 16 19 C -0.03 -0.16 9.53 -39.18 -0.37 -0.53 16 20 C -0.09 -0.51 10.09 -39.47 -0.40 -0.91 16 21 C 0.25 2.36 8.02 -156.27 -1.25 1.11 16 22 N -0.32 -3.83 12.26 31.10 0.38 -3.45 16 23 N 0.00 -0.04 13.35 60.35 0.81 0.76 16 24 N -0.10 -1.23 13.99 60.35 0.84 -0.39 16 25 N -0.31 -2.98 3.92 -12.06 -0.05 -3.03 16 26 C 0.18 1.37 10.77 -16.51 -0.18 1.19 16 27 C -0.05 -0.75 9.69 -39.61 -0.38 -1.13 16 28 C -0.20 -3.53 9.99 -39.40 -0.39 -3.92 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.13 2.43 5.64 -52.48 -0.30 2.13 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.40 2.65 6.50 -40.82 -0.27 2.39 16 35 H 0.16 0.35 6.44 -52.48 -0.34 0.01 16 36 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.20 1.30 7.57 -52.49 -0.40 0.91 16 38 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -31.93 350.91 -5.56 -37.50 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.24 Total: 3.41 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -5.08 Total: -14.01 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 2.40 Total: -35.26 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.93 -5.56 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758208674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.174 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds