Wall clock time and date at job start Tue Mar 31 2020 22:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 119.99809 * 2 1 4 4 H 1.48493 * 109.47047 * 239.99940 * 3 2 1 5 5 H 1.48499 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46749 * 120.00303 * 3 2 1 7 7 C 1.38653 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00389 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99867 * 185.05717 * 9 7 2 11 11 C 1.38883 * 120.06751 * 354.46282 * 10 9 7 12 12 C 1.38096 * 119.93043 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06886 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.93285 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46781 * 90.00102 * 14 13 12 16 16 C 1.34778 * 119.99811 * 180.02562 * 15 14 13 17 17 O 1.21580 * 119.99982 * 359.97438 * 16 15 14 18 18 C 1.47696 * 120.00255 * 180.02562 * 16 15 14 19 19 C 1.41601 * 120.02954 * 359.97438 * 18 16 15 20 20 C 1.35777 * 119.54558 * 180.02562 * 19 18 16 21 21 C 1.40854 * 119.39326 * 359.97438 * 20 19 18 22 22 N 1.32490 * 133.41738 * 180.02562 * 21 20 19 23 23 N 1.28535 * 110.24321 * 179.97438 * 22 21 20 24 24 N 1.28984 * 110.84213 * 359.97438 * 23 22 21 25 25 N 1.36933 * 119.93480 * 0.02562 * 21 20 19 26 26 C 1.35501 * 120.83968 * 0.02562 * 25 21 20 27 27 C 1.38306 * 120.13848 * 0.25807 * 13 12 11 28 28 C 1.38098 * 120.06428 * 359.44567 * 27 13 12 29 29 H 0.96999 * 120.00072 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.03363 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.97002 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.46629 * 330.00763 * 14 13 12 33 33 H 1.08995 * 109.47263 * 210.00507 * 14 13 12 34 34 H 0.97003 * 120.00402 * 0.02562 * 15 14 13 35 35 H 1.08005 * 120.22390 * 0.04452 * 19 18 16 36 36 H 1.08004 * 120.30206 * 180.02562 * 20 19 18 37 37 H 1.07995 * 119.82073 * 179.97438 * 26 25 21 38 38 H 1.07992 * 119.96625 * 179.70627 * 27 13 12 39 39 H 1.08004 * 120.03308 * 180.27829 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0920 12 6 4.2025 -4.5971 0.1996 13 6 3.5688 -5.8205 0.3202 14 6 4.3851 -7.0819 0.4368 15 7 4.6567 -7.3588 1.8495 16 6 5.3762 -8.4442 2.1971 17 8 5.7993 -9.1937 1.3384 18 6 5.6496 -8.7238 3.6214 19 6 5.1567 -7.8516 4.6221 20 6 5.4143 -8.1178 5.9284 21 6 6.1681 -9.2588 6.2658 22 7 6.5746 -9.7741 7.4167 23 7 7.2490 -10.8485 7.2095 24 7 7.3285 -11.1043 5.9478 25 7 6.6336 -10.0866 5.2793 26 6 6.3793 -9.8237 3.9745 27 6 2.1875 -5.8892 0.3281 28 6 1.4367 -4.7345 0.2270 29 1 -0.4850 0.8400 0.0004 30 1 3.9527 -2.4844 -0.0025 31 1 5.2813 -4.5471 0.1896 32 1 5.3274 -6.9554 -0.0964 33 1 3.8312 -7.9145 0.0032 34 1 4.3188 -6.7611 2.5346 35 1 4.5794 -6.9809 4.3482 36 1 5.0439 -7.4610 6.7017 37 1 6.7548 -10.4874 3.2099 38 1 1.6955 -6.8464 0.4176 39 1 0.3581 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758208674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:24 Heat of formation + Delta-G solvation = 94.668396 kcal Electronic energy + Delta-G solvation = -26598.695864 eV Core-core repulsion = 22509.659784 eV Total energy + Delta-G solvation = -4089.036080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.64384 -41.38793 -40.71773 -39.35371 -38.42083 -35.94065 -35.22601 -34.26196 -33.48324 -31.80119 -31.75480 -31.27916 -27.87787 -27.07368 -25.75864 -25.40417 -24.05101 -23.59285 -22.38108 -22.07601 -20.12927 -19.82735 -19.04221 -18.63293 -18.58783 -18.14147 -17.02982 -16.63513 -16.39481 -16.15403 -16.06562 -15.98906 -15.52332 -15.43180 -15.02923 -14.70590 -14.68250 -14.38129 -14.31079 -14.08635 -13.78961 -13.63123 -13.26909 -12.98562 -12.92439 -12.82477 -12.51385 -12.35210 -12.34515 -12.18773 -12.12988 -11.38537 -11.38455 -11.15641 -10.76960 -10.17322 -9.83432 -9.74974 -8.97156 -8.45514 -6.13410 -1.08797 -0.66515 0.37569 0.61162 0.63986 0.68396 1.38450 1.47342 1.47967 1.53643 2.05165 2.19357 2.22283 2.46841 2.83929 2.93834 3.19194 3.28982 3.44372 3.53735 3.66201 3.77235 3.96072 4.00457 4.09572 4.23506 4.41731 4.52203 4.60692 4.62981 4.63977 4.81739 4.86665 4.94790 5.06741 5.10314 5.18466 5.30571 5.32649 5.58332 5.74872 5.79706 6.04998 6.22112 6.42540 6.99738 7.03287 7.05313 7.79844 8.76857 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.001954 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.024317 B =14329.062267 C =15190.951809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.015 2.985 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.411 4.411 8 H 0.105 0.895 9 O -0.231 6.231 10 C 0.122 3.878 11 C -0.246 4.246 12 C -0.042 4.042 13 C -0.183 4.183 14 C 0.184 3.816 15 N -0.697 5.697 16 C 0.575 3.425 17 O -0.564 6.564 18 C -0.135 4.135 19 C -0.014 4.014 20 C -0.083 4.083 21 C 0.241 3.759 22 N -0.347 5.347 23 N -0.025 5.025 24 N -0.128 5.128 25 N -0.308 5.308 26 C 0.168 3.832 27 C -0.040 4.040 28 C -0.207 4.207 29 H 0.272 0.728 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.416 0.584 35 H 0.201 0.799 36 H 0.206 0.794 37 H 0.202 0.798 38 H 0.151 0.849 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.709 -13.722 7.148 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.835 3.165 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.122 0.878 9 O -0.137 6.137 10 C 0.071 3.929 11 C -0.265 4.265 12 C -0.061 4.061 13 C -0.184 4.184 14 C 0.062 3.938 15 N -0.349 5.349 16 C 0.360 3.640 17 O -0.444 6.444 18 C -0.144 4.144 19 C -0.040 4.040 20 C -0.105 4.105 21 C -0.012 4.012 22 N -0.207 5.207 23 N -0.018 5.018 24 N -0.111 5.111 25 N -0.086 5.086 26 C 0.038 3.962 27 C -0.059 4.059 28 C -0.226 4.226 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.218 0.782 36 H 0.223 0.777 37 H 0.218 0.782 38 H 0.168 0.832 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.370 -15.183 7.495 20.395 hybrid contribution -0.449 1.548 -0.484 1.683 sum 10.921 -13.634 7.011 18.823 Atomic orbital electron populations 1.70169 1.07999 1.28840 1.48662 1.26545 0.96779 1.02734 0.95945 0.84688 0.77404 0.74480 0.79962 1.18314 1.20076 1.17949 1.21770 0.92550 0.81304 1.53057 0.87775 1.83950 1.36167 1.12739 1.80827 1.20050 0.91742 0.87920 0.93203 1.21256 0.92925 1.00250 1.12059 1.20973 0.99925 0.90604 0.94587 1.19456 0.93301 0.94055 1.11587 1.20007 0.98955 0.93828 0.81047 1.45979 1.53188 1.25860 1.09895 1.17559 0.78526 0.81348 0.86529 1.90856 1.53028 1.48862 1.51645 1.19652 1.02772 0.96521 0.95415 1.21888 0.93836 0.98283 0.89972 1.20815 0.97398 0.93079 0.99252 1.23682 0.97525 0.95549 0.84429 1.75097 1.17630 1.06680 1.21330 1.77861 1.08236 1.07471 1.08260 1.82802 1.19649 1.08860 0.99802 1.48807 1.33332 1.17932 1.08534 1.21928 0.94480 0.97681 0.82137 1.20911 0.93133 0.96890 0.94940 1.20466 1.00056 0.90515 1.11568 0.91898 0.86419 0.83974 0.90218 0.89974 0.74555 0.78200 0.77666 0.78160 0.83186 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 13.67 21.61 0.30 -53.29 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 39.99 29.55 68.60 2.03 42.01 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.41 -22.05 9.49 67.92 0.64 -21.41 16 8 H 0.11 5.03 5.20 -2.91 -0.02 5.02 16 9 O -0.23 -12.71 9.76 -22.77 -0.22 -12.94 16 10 C 0.12 5.25 6.65 22.58 0.15 5.40 16 11 C -0.25 -8.86 9.17 22.39 0.21 -8.66 16 12 C -0.04 -1.08 9.69 22.25 0.22 -0.86 16 13 C -0.18 -3.89 5.25 -19.83 -0.10 -3.99 16 14 C 0.18 2.83 5.80 85.63 0.50 3.33 16 15 N -0.70 -7.80 5.50 -469.84 -2.58 -10.38 16 16 C 0.57 7.73 7.77 86.74 0.67 8.41 16 17 O -0.56 -11.83 16.28 -3.97 -0.06 -11.90 16 18 C -0.13 -1.30 5.84 -20.32 -0.12 -1.42 16 19 C -0.01 -0.06 9.53 22.53 0.21 0.16 16 20 C -0.08 -0.59 10.09 22.34 0.23 -0.37 16 21 C 0.24 4.06 8.02 134.15 1.08 5.14 16 22 N -0.35 -8.06 12.26 -55.52 -0.68 -8.74 16 23 N -0.03 -0.65 13.35 37.02 0.49 -0.16 16 24 N -0.13 -3.05 13.99 37.02 0.52 -2.53 16 25 N -0.31 -5.59 3.92 -192.06 -0.75 -6.34 16 26 C 0.17 2.20 10.77 83.75 0.90 3.10 16 27 C -0.04 -0.99 9.69 22.25 0.22 -0.77 16 28 C -0.21 -7.27 9.99 22.39 0.22 -7.05 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 30 H 0.12 4.44 5.64 -2.91 -0.02 4.42 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.42 2.75 6.50 -92.71 -0.60 2.15 16 35 H 0.20 -0.53 6.44 -2.91 -0.02 -0.55 16 36 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.20 2.35 7.57 -2.91 -0.02 2.33 16 38 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -77.25 350.91 5.06 -72.19 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.54 Total: 11.78 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 5.49 Total: -19.71 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.71 Total: -81.44 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.29 Total: -24.83 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -77.25 5.06 -72.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758208674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.855 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds