Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48496 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47184 * 300.00384 * 3 2 1 6 6 H 1.48497 * 109.46798 * 60.00386 * 3 2 1 7 7 C 1.37875 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99490 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00414 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99732 * 169.99736 * 10 9 7 12 12 C 1.53047 * 109.36214 * 183.18574 * 11 10 9 13 13 N 1.46963 * 109.36748 * 301.60078 * 12 11 10 14 14 C 1.46896 * 111.00225 * 183.18738 * 13 12 11 15 15 C 1.50693 * 109.47292 * 164.71672 * 14 13 12 16 16 C 1.38240 * 119.99231 * 106.86429 * 15 14 13 17 17 C 1.38336 * 119.98515 * 179.72953 * 16 15 14 18 18 Cl 1.73605 * 120.01287 * 180.27516 * 17 16 15 19 19 C 1.38370 * 119.97283 * 0.24751 * 17 16 15 20 20 C 1.38188 * 119.99013 * 0.02562 * 19 17 16 21 21 C 1.38217 * 119.99514 * 287.09666 * 15 14 13 22 22 N 1.48015 * 119.98543 * 0.02562 * 21 15 14 23 23 O 1.21813 * 119.99897 * 174.75905 * 22 21 15 24 24 O 1.21797 * 120.00216 * 354.76519 * 22 21 15 25 25 C 1.46961 * 110.87799 * 59.32187 * 13 12 11 26 26 C 1.46954 * 110.99707 * 293.79909 * 10 9 7 27 27 H 0.97004 * 120.00010 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46989 * 59.99905 * 9 7 2 29 29 H 1.09000 * 109.47087 * 299.99975 * 9 7 2 30 30 H 1.08997 * 109.48530 * 63.22550 * 11 10 9 31 31 H 1.08995 * 109.49111 * 303.15582 * 11 10 9 32 32 H 1.09002 * 109.49095 * 181.63449 * 12 11 10 33 33 H 1.09000 * 109.49293 * 61.56848 * 12 11 10 34 34 H 1.09000 * 109.47110 * 44.71440 * 14 13 12 35 35 H 1.09001 * 109.47248 * 284.71976 * 14 13 12 36 36 H 1.07998 * 120.00810 * 359.97438 * 16 15 14 37 37 H 1.08005 * 120.00742 * 180.02562 * 19 17 16 38 38 H 1.08002 * 119.99939 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.49229 * 60.64532 * 25 13 12 40 40 H 1.08995 * 109.48740 * 180.71233 * 25 13 12 41 41 H 1.09002 * 109.49080 * 296.77705 * 26 10 9 42 42 H 1.09001 * 109.49472 * 56.82399 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5208 -4.8940 0.2378 12 6 2.5563 -6.0188 0.3094 13 7 3.3193 -6.0594 -0.9460 14 6 4.2739 -7.1759 -0.9460 15 6 4.7602 -7.4210 -2.3511 16 6 6.0443 -7.0571 -2.7113 17 6 6.4924 -7.2873 -3.9997 18 17 8.1073 -6.8371 -4.4508 19 6 5.6533 -7.8770 -4.9284 20 6 4.3680 -8.2352 -4.5688 21 6 3.9207 -8.0052 -3.2808 22 7 2.5440 -8.3894 -2.8961 23 8 1.7731 -8.8157 -3.7374 24 8 2.1820 -8.2793 -1.7384 25 6 4.0041 -4.7810 -1.1842 26 6 2.9686 -3.6562 -1.2558 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 0.8253 -5.0915 -0.5779 31 1 0.9733 -4.8434 1.1788 32 1 2.0484 -6.9719 0.4571 33 1 3.2355 -5.8354 1.1419 34 1 3.7832 -8.0734 -0.5696 35 1 5.1212 -6.9296 -0.3061 36 1 6.6988 -6.5968 -1.9860 37 1 6.0027 -8.0574 -5.9344 38 1 3.7127 -8.6951 -5.2938 39 1 4.6997 -4.5835 -0.3686 40 1 4.5517 -4.8317 -2.1253 41 1 2.2894 -3.8397 -2.0885 42 1 3.4762 -2.7031 -1.4038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760943031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = 39.719140 kcal Electronic energy + Delta-G solvation = -27513.908927 eV Core-core repulsion = 23523.597563 eV Total energy + Delta-G solvation = -3990.311364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.25788 -40.10182 -38.64687 -37.20541 -36.59026 -35.24629 -32.86995 -32.09913 -31.94051 -30.41493 -28.53924 -26.81461 -25.87607 -24.08330 -23.21719 -22.96284 -21.94607 -21.33360 -19.26337 -19.13952 -18.59980 -17.50744 -17.16790 -16.37795 -16.30312 -15.85843 -15.36001 -14.82938 -14.55678 -14.40710 -14.19082 -14.14006 -13.74440 -13.55314 -13.25705 -12.90080 -12.57485 -12.25868 -12.18112 -11.99818 -11.71734 -11.52203 -11.39468 -11.20888 -11.02001 -10.90305 -10.83726 -10.72500 -10.55098 -10.38912 -10.32152 -9.77775 -9.75902 -9.62142 -9.15269 -8.43918 -8.23324 -7.21859 -6.01979 -4.03511 -0.44226 0.38830 1.11817 1.22229 1.46793 2.70126 3.30473 3.37802 3.42035 3.77861 3.91767 4.08377 4.25583 4.35593 4.42505 4.63746 4.88201 4.96851 5.05065 5.12227 5.27037 5.33043 5.33746 5.39887 5.48665 5.56673 5.68988 5.78510 5.84259 5.87674 6.04800 6.22481 6.41079 6.50000 6.58854 6.64895 7.11200 7.15080 7.35892 7.38737 7.69766 7.80652 8.10246 8.21651 8.56277 9.04181 9.60681 11.08926 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.003148 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.457771 B = 8892.724376 C =10361.348515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.069 3.931 13 N -0.527 5.527 14 C 0.078 3.922 15 C 0.007 3.993 16 C -0.109 4.109 17 C 0.010 3.990 18 Cl -0.043 7.043 19 C -0.115 4.115 20 C -0.045 4.045 21 C -0.022 4.022 22 N 0.033 4.967 23 O -0.186 6.186 24 O -0.112 6.112 25 C 0.054 3.946 26 C 0.070 3.930 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 -19.826 -8.246 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.058 4.058 13 N -0.251 5.251 14 C -0.050 4.050 15 C 0.005 3.995 16 C -0.129 4.129 17 C -0.017 4.017 18 Cl -0.013 7.013 19 C -0.135 4.135 20 C -0.064 4.064 21 C -0.106 4.106 22 N 0.554 4.446 23 O -0.393 6.393 24 O -0.339 6.339 25 C -0.074 4.074 26 C -0.059 4.059 27 H 0.070 0.930 28 H 0.009 0.991 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.347 -19.485 -8.538 26.231 hybrid contribution 0.205 1.006 -0.125 1.034 sum 15.552 -18.479 -8.664 25.659 Atomic orbital electron populations 1.69974 1.06048 1.26637 1.51047 1.24993 0.94850 0.99284 0.95496 0.86463 0.80019 0.83543 0.77516 1.19730 1.21136 1.20990 1.21187 0.93422 0.89990 1.49953 0.91951 1.19699 0.90041 0.87262 0.96159 1.62304 1.28236 1.02954 1.32831 1.22071 0.94839 0.89671 1.00677 1.22151 0.95718 0.99365 0.88594 1.62081 1.24355 1.02072 1.36633 1.21346 0.95981 0.98185 0.89478 1.19804 0.91591 0.91491 0.96620 1.21074 0.95280 1.01039 0.95509 1.21286 0.87948 0.97815 0.94674 1.98428 1.19737 1.90654 1.92525 1.21046 0.92199 0.99728 1.00521 1.21002 0.95823 0.95661 0.93899 1.20983 0.84188 1.09135 0.96295 1.43318 1.02247 0.98272 1.00778 1.94539 1.49930 1.48294 1.46508 1.94526 1.80429 1.55510 1.03401 1.22347 0.96397 0.88939 0.99745 1.21939 0.95345 0.97132 0.91471 0.92977 0.99108 0.95140 0.95009 0.90804 0.89968 0.94284 0.87014 0.92998 0.82751 0.82725 0.82146 0.93944 0.91941 0.95633 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 8 H 0.06 1.73 7.13 -52.48 -0.37 1.36 16 9 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 10 N -0.54 -11.72 4.70 -235.91 -1.11 -12.83 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 C 0.07 1.03 5.35 -3.77 -0.02 1.01 16 13 N -0.53 -7.51 3.62 -235.91 -0.85 -8.36 16 14 C 0.08 0.85 4.13 -4.98 -0.02 0.83 16 15 C 0.01 0.07 4.61 -104.63 -0.48 -0.41 16 16 C -0.11 -0.90 9.00 -39.54 -0.36 -1.26 16 17 C 0.01 0.07 6.32 -39.50 -0.25 -0.17 16 18 Cl -0.04 -0.30 28.96 -51.86 -1.50 -1.80 16 19 C -0.12 -0.78 9.83 -39.55 -0.39 -1.17 16 20 C -0.04 -0.38 9.56 -39.59 -0.38 -0.75 16 21 C -0.02 -0.25 6.84 -79.94 -0.55 -0.79 16 22 N 0.03 0.45 4.45 33.96 0.15 0.60 16 23 O -0.19 -2.70 18.46 -29.47 -0.54 -3.25 16 24 O -0.11 -1.63 13.84 -29.46 -0.41 -2.04 16 25 C 0.05 0.82 5.44 -3.76 -0.02 0.80 16 26 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 29 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.08 1.10 7.47 -51.93 -0.39 0.71 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 1.20 6.04 -51.93 -0.31 0.89 16 35 H 0.05 0.49 7.85 -51.93 -0.41 0.09 16 36 H 0.15 1.05 7.99 -52.49 -0.42 0.63 16 37 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.16 1.11 7.62 -52.49 -0.40 0.71 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.87 7.03 -51.93 -0.36 0.50 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -31.63 359.99 -11.57 -43.20 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.53 Total: -3.88 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.92 Total: -7.53 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.07 Total: -46.76 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.95 Total: -5.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.63 -11.57 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760943031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.915 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds