Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00105 * 2 1 4 4 H 1.48496 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47184 * 300.00384 * 3 2 1 6 6 H 1.48497 * 109.46798 * 60.00386 * 3 2 1 7 7 C 1.37875 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99490 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00414 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99732 * 169.99736 * 10 9 7 12 12 C 1.53047 * 109.36214 * 183.18574 * 11 10 9 13 13 N 1.46963 * 109.36748 * 301.60078 * 12 11 10 14 14 C 1.46896 * 111.00225 * 183.18738 * 13 12 11 15 15 C 1.50693 * 109.47292 * 164.71672 * 14 13 12 16 16 C 1.38240 * 119.99231 * 106.86429 * 15 14 13 17 17 C 1.38336 * 119.98515 * 179.72953 * 16 15 14 18 18 Cl 1.73605 * 120.01287 * 180.27516 * 17 16 15 19 19 C 1.38370 * 119.97283 * 0.24751 * 17 16 15 20 20 C 1.38188 * 119.99013 * 0.02562 * 19 17 16 21 21 C 1.38217 * 119.99514 * 287.09666 * 15 14 13 22 22 N 1.48015 * 119.98543 * 0.02562 * 21 15 14 23 23 O 1.21813 * 119.99897 * 174.75905 * 22 21 15 24 24 O 1.21797 * 120.00216 * 354.76519 * 22 21 15 25 25 C 1.46961 * 110.87799 * 59.32187 * 13 12 11 26 26 C 1.46954 * 110.99707 * 293.79909 * 10 9 7 27 27 H 0.97004 * 120.00010 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46989 * 59.99905 * 9 7 2 29 29 H 1.09000 * 109.47087 * 299.99975 * 9 7 2 30 30 H 1.08997 * 109.48530 * 63.22550 * 11 10 9 31 31 H 1.08995 * 109.49111 * 303.15582 * 11 10 9 32 32 H 1.09002 * 109.49095 * 181.63449 * 12 11 10 33 33 H 1.09000 * 109.49293 * 61.56848 * 12 11 10 34 34 H 1.09000 * 109.47110 * 44.71440 * 14 13 12 35 35 H 1.09001 * 109.47248 * 284.71976 * 14 13 12 36 36 H 1.07998 * 120.00810 * 359.97438 * 16 15 14 37 37 H 1.08005 * 120.00742 * 180.02562 * 19 17 16 38 38 H 1.08002 * 119.99939 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.49229 * 60.64532 * 25 13 12 40 40 H 1.08995 * 109.48740 * 180.71233 * 25 13 12 41 41 H 1.09002 * 109.49080 * 296.77705 * 26 10 9 42 42 H 1.09001 * 109.49472 * 56.82399 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5208 -4.8940 0.2378 12 6 2.5563 -6.0188 0.3094 13 7 3.3193 -6.0594 -0.9460 14 6 4.2739 -7.1759 -0.9460 15 6 4.7602 -7.4210 -2.3511 16 6 6.0443 -7.0571 -2.7113 17 6 6.4924 -7.2873 -3.9997 18 17 8.1073 -6.8371 -4.4508 19 6 5.6533 -7.8770 -4.9284 20 6 4.3680 -8.2352 -4.5688 21 6 3.9207 -8.0052 -3.2808 22 7 2.5440 -8.3894 -2.8961 23 8 1.7731 -8.8157 -3.7374 24 8 2.1820 -8.2793 -1.7384 25 6 4.0041 -4.7810 -1.1842 26 6 2.9686 -3.6562 -1.2558 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 0.8253 -5.0915 -0.5779 31 1 0.9733 -4.8434 1.1788 32 1 2.0484 -6.9719 0.4571 33 1 3.2355 -5.8354 1.1419 34 1 3.7832 -8.0734 -0.5696 35 1 5.1212 -6.9296 -0.3061 36 1 6.6988 -6.5968 -1.9860 37 1 6.0027 -8.0574 -5.9344 38 1 3.7127 -8.6951 -5.2938 39 1 4.6997 -4.5835 -0.3686 40 1 4.5517 -4.8317 -2.1253 41 1 2.2894 -3.8397 -2.0885 42 1 3.4762 -2.7031 -1.4038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760943031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = 20.452658 kcal Electronic energy + Delta-G solvation = -27514.744384 eV Core-core repulsion = 23523.597563 eV Total energy + Delta-G solvation = -3991.146822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.20212 -40.91518 -39.91951 -37.86959 -37.61468 -36.65759 -34.69842 -33.11887 -32.81079 -31.82329 -30.06475 -28.09030 -27.11077 -25.45214 -24.55726 -23.79424 -23.31596 -22.68801 -20.67025 -20.03468 -19.57433 -18.51964 -18.46859 -17.84992 -17.28490 -17.03728 -16.46120 -16.10073 -15.86024 -15.80805 -15.48135 -15.17836 -15.07564 -14.63584 -14.37562 -14.10757 -13.75091 -13.64583 -13.34109 -13.00575 -12.87283 -12.85145 -12.69774 -12.55973 -12.41940 -12.28783 -12.17758 -12.10893 -12.06474 -11.99114 -11.65713 -11.48169 -11.18353 -10.64058 -10.42904 -10.31985 -9.35520 -9.06277 -8.21733 -6.32698 -1.28059 -0.24170 0.22387 0.44199 0.79450 1.40243 1.40964 1.54591 2.01477 2.39227 2.90583 3.10377 3.20324 3.26589 3.28499 3.64087 3.67064 3.94321 3.99712 4.12639 4.20438 4.29878 4.38837 4.45717 4.48723 4.52025 4.63299 4.65904 4.76452 4.79114 4.88752 4.96709 5.00451 5.05085 5.07288 5.20168 5.26583 5.44895 5.62451 5.98256 6.00067 6.07729 6.31614 6.59629 6.63068 6.83456 7.37331 8.90026 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.003148 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.457771 B = 8892.724376 C =10361.348515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.539 5.539 11 C 0.055 3.945 12 C 0.082 3.918 13 N -0.541 5.541 14 C 0.081 3.919 15 C -0.003 4.003 16 C -0.105 4.105 17 C 0.013 3.987 18 Cl -0.032 7.032 19 C -0.102 4.102 20 C -0.045 4.045 21 C -0.042 4.042 22 N 0.034 4.966 23 O -0.214 6.214 24 O -0.132 6.132 25 C 0.070 3.930 26 C 0.071 3.929 27 H 0.264 0.736 28 H -0.046 1.046 29 H 0.004 0.996 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.172 0.828 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.002 0.998 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.174 -20.179 -8.865 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.074 4.074 12 C -0.046 4.046 13 N -0.266 5.266 14 C -0.046 4.046 15 C -0.005 4.005 16 C -0.125 4.125 17 C -0.015 4.015 18 Cl -0.003 7.003 19 C -0.121 4.121 20 C -0.064 4.064 21 C -0.126 4.126 22 N 0.549 4.451 23 O -0.417 6.417 24 O -0.356 6.356 25 C -0.058 4.058 26 C -0.057 4.057 27 H 0.073 0.927 28 H -0.029 1.029 29 H 0.022 0.978 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.189 0.811 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.020 0.980 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.790 -19.882 -9.167 28.851 hybrid contribution -0.801 1.066 -0.006 1.333 sum 17.989 -18.816 -9.174 27.601 Atomic orbital electron populations 1.70113 1.07898 1.27887 1.51779 1.25972 0.95743 1.03389 0.94726 0.85288 0.79029 0.78312 0.77705 1.18404 1.20528 1.20308 1.21471 0.93636 0.90867 1.50038 0.91646 1.19351 0.90123 0.89215 0.93097 1.62261 1.27141 1.03015 1.33932 1.22165 0.95862 0.89598 0.99758 1.22004 0.95025 0.98160 0.89375 1.61966 1.25702 1.02538 1.36353 1.21350 0.95912 0.96654 0.90671 1.19769 0.92281 0.92423 0.96050 1.21244 0.94560 1.00437 0.96243 1.21417 0.88380 0.97084 0.94580 1.98444 1.18992 1.90462 1.92398 1.21373 0.91064 0.97986 1.01669 1.21240 0.96676 0.95393 0.93079 1.21202 0.82590 1.10973 0.97802 1.43713 1.03284 0.97660 1.00400 1.94518 1.51233 1.49473 1.46493 1.94495 1.81276 1.56007 1.03857 1.22137 0.94722 0.87789 1.01168 1.21934 0.95598 0.98577 0.89618 0.92678 1.02867 0.97780 0.97067 0.90867 0.88214 0.93278 0.86897 0.90654 0.80955 0.79765 0.81064 0.93042 0.89962 0.97967 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.52 -30.11 8.47 25.60 0.22 -29.89 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 11.62 4.72 85.56 0.40 12.02 16 10 N -0.54 -24.21 4.70 -900.28 -4.23 -28.44 16 11 C 0.05 2.10 5.61 86.31 0.48 2.58 16 12 C 0.08 2.36 5.35 86.31 0.46 2.82 16 13 N -0.54 -14.72 3.62 -900.28 -3.26 -17.97 16 14 C 0.08 1.59 4.13 85.56 0.35 1.94 16 15 C 0.00 -0.05 4.61 -19.87 -0.09 -0.14 16 16 C -0.11 -1.38 9.00 22.29 0.20 -1.18 16 17 C 0.01 0.15 6.32 22.32 0.14 0.29 16 18 Cl -0.03 -0.35 28.96 -2.72 -0.08 -0.42 16 19 C -0.10 -1.04 9.83 22.29 0.22 -0.82 16 20 C -0.04 -0.66 9.56 22.27 0.21 -0.44 16 21 C -0.04 -0.86 6.84 36.38 0.25 -0.62 16 22 N 0.03 0.92 4.45 -46.46 -0.21 0.71 16 23 O -0.21 -6.38 18.46 18.87 0.35 -6.03 16 24 O -0.13 -3.82 13.84 18.89 0.26 -3.56 16 25 C 0.07 2.03 5.44 86.31 0.47 2.50 16 26 C 0.07 2.88 5.43 86.31 0.47 3.35 16 27 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 28 H -0.05 -2.87 8.12 -2.39 -0.02 -2.89 16 29 H 0.00 0.24 8.03 -2.39 -0.02 0.23 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 32 H 0.10 2.56 7.47 -2.39 -0.02 2.54 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 2.22 6.04 -2.39 -0.01 2.21 16 35 H 0.08 1.15 7.85 -2.39 -0.02 1.13 16 36 H 0.17 1.62 7.99 -2.91 -0.02 1.60 16 37 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 38 H 0.17 2.09 7.62 -2.91 -0.02 2.07 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 2.09 7.03 -2.39 -0.02 2.07 16 41 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.07 2.99 6.79 -2.39 -0.02 2.98 16 Total: -1.00 -71.39 359.99 0.44 -70.95 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.04 Total: 2.69 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.25 Total: -7.16 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -7.41 Total: -103.06 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.61 Total: -9.59 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.42 kcal Total: -71.39 0.44 -70.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760943031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.406 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds