Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47114 * 240.00310 * 3 2 1 5 5 H 1.48495 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46951 * 120.00304 * 3 2 1 7 7 C 1.37877 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00447 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47629 * 179.97438 * 9 7 2 11 11 C 1.46952 * 111.00298 * 169.99684 * 10 9 7 12 12 C 1.53053 * 109.36401 * 183.18479 * 11 10 9 13 13 N 1.46951 * 109.36787 * 301.60310 * 12 11 10 14 14 C 1.46903 * 111.00066 * 183.18426 * 13 12 11 15 15 C 1.50702 * 109.47023 * 170.00057 * 14 13 12 16 16 C 1.38269 * 119.98726 * 270.23564 * 15 14 13 17 17 C 1.38184 * 120.01333 * 180.27607 * 16 15 14 18 18 C 1.38378 * 119.98682 * 359.74544 * 17 16 15 19 19 Cl 1.73597 * 120.01243 * 180.02562 * 18 17 16 20 20 C 1.38325 * 119.97237 * 0.02562 * 18 17 16 21 21 N 1.48025 * 120.00578 * 180.02562 * 20 18 17 22 22 O 1.21803 * 119.99889 * 179.97438 * 21 20 18 23 23 O 1.21799 * 119.99933 * 359.97111 * 21 20 18 24 24 C 1.38215 * 119.98704 * 89.99934 * 15 14 13 25 25 C 1.46958 * 110.87997 * 59.31965 * 13 12 11 26 26 C 1.46960 * 110.99825 * 293.80153 * 10 9 7 27 27 H 0.96998 * 119.99881 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47282 * 59.99474 * 9 7 2 29 29 H 1.09003 * 109.46949 * 300.00061 * 9 7 2 30 30 H 1.09003 * 109.48600 * 63.22266 * 11 10 9 31 31 H 1.08992 * 109.48950 * 303.15711 * 11 10 9 32 32 H 1.08997 * 109.49082 * 181.63102 * 12 11 10 33 33 H 1.09006 * 109.48263 * 61.56743 * 12 11 10 34 34 H 1.08998 * 109.46707 * 50.00061 * 14 13 12 35 35 H 1.08998 * 109.47109 * 289.99694 * 14 13 12 36 36 H 1.08000 * 119.98952 * 0.02562 * 16 15 14 37 37 H 1.08002 * 120.00690 * 179.72031 * 17 16 15 38 38 H 1.08002 * 119.99636 * 0.02562 * 24 15 14 39 39 H 1.08998 * 109.49223 * 60.64309 * 25 13 12 40 40 H 1.09001 * 109.49152 * 180.71616 * 25 13 12 41 41 H 1.09002 * 109.48540 * 296.77789 * 26 10 9 42 42 H 1.08998 * 109.48770 * 56.81915 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0018 11 6 1.5210 -4.8941 0.2365 12 6 2.5566 -6.0190 0.3067 13 7 3.3186 -6.0590 -0.9491 14 6 4.2732 -7.1755 -0.9504 15 6 4.8562 -7.3365 -2.3307 16 6 4.2366 -8.1621 -3.2506 17 6 4.7738 -8.3146 -4.5146 18 6 5.9291 -7.6366 -4.8614 19 17 6.6042 -7.8271 -6.4494 20 6 6.5459 -6.8070 -3.9423 21 7 7.7815 -6.0810 -4.3127 22 8 8.3243 -5.3502 -3.5034 23 8 8.2555 -6.2144 -5.4267 24 6 6.0072 -6.6549 -2.6783 25 6 4.0032 -4.7806 -1.1873 26 6 2.9676 -3.6558 -1.2577 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 0.8248 -5.0913 -0.5787 31 1 0.9742 -4.8439 1.1780 32 1 2.0488 -6.9721 0.4545 33 1 3.2364 -5.8358 1.1389 34 1 3.7594 -8.0930 -0.6637 35 1 5.0737 -6.9699 -0.2397 36 1 3.3348 -8.6912 -2.9798 37 1 4.2922 -8.9631 -5.2315 38 1 6.4889 -6.0074 -1.9605 39 1 4.6993 -4.5834 -0.3721 40 1 4.5500 -4.8307 -2.1289 41 1 2.2878 -3.8388 -2.0898 42 1 3.4751 -2.7025 -1.4056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760944041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = 40.702838 kcal Electronic energy + Delta-G solvation = -26873.173493 eV Core-core repulsion = 22882.904785 eV Total energy + Delta-G solvation = -3990.268708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37499 -40.30380 -38.71329 -37.22991 -36.63266 -35.40599 -32.89350 -32.45906 -31.80644 -30.53687 -28.47622 -26.87123 -26.20623 -24.16178 -23.40372 -23.06609 -21.88949 -21.39885 -19.39614 -19.11535 -18.79020 -17.73998 -17.33472 -16.41558 -16.33552 -16.13455 -15.39425 -14.82585 -14.68175 -14.61254 -14.28360 -14.14776 -13.86361 -13.44354 -13.38873 -12.82826 -12.49790 -12.24594 -12.20565 -12.05162 -11.96252 -11.72615 -11.54660 -11.25461 -11.22693 -10.97346 -10.84061 -10.71702 -10.68000 -10.50108 -10.39830 -10.08466 -9.78948 -9.45502 -9.23914 -8.48070 -8.39643 -7.32186 -6.06015 -4.07883 -0.51801 0.29847 1.01655 1.04153 1.43582 2.67623 3.32343 3.36344 3.39399 3.72816 3.86386 4.06142 4.25868 4.36494 4.39655 4.42287 4.81992 4.85978 4.99985 5.06502 5.13095 5.23216 5.29161 5.29824 5.39477 5.58086 5.66031 5.68901 5.75153 5.77826 5.90781 6.04458 6.14165 6.30817 6.46182 6.58706 6.93718 6.97335 7.25120 7.29529 7.45263 7.74962 8.02507 8.13313 8.48972 8.99192 9.56763 11.04773 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002754 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.774758 B =10163.022684 C =11375.293154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.535 5.535 14 C 0.089 3.911 15 C -0.065 4.065 16 C -0.035 4.035 17 C -0.112 4.112 18 C 0.011 3.989 19 Cl -0.011 7.011 20 C -0.041 4.041 21 N 0.027 4.973 22 O -0.160 6.160 23 O -0.140 6.140 24 C -0.037 4.037 25 C 0.052 3.948 26 C 0.069 3.931 27 H 0.262 0.738 28 H -0.009 1.009 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -22.040 -7.059 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.260 5.260 14 C -0.038 4.038 15 C -0.067 4.067 16 C -0.054 4.054 17 C -0.131 4.131 18 C -0.017 4.017 19 Cl 0.019 6.981 20 C -0.125 4.125 21 N 0.548 4.452 22 O -0.374 6.374 23 O -0.359 6.359 24 C -0.057 4.057 25 C -0.075 4.075 26 C -0.060 4.060 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.541 -22.250 -6.979 24.834 hybrid contribution 0.705 1.176 -0.307 1.405 sum 9.245 -21.075 -7.286 24.139 Atomic orbital electron populations 1.69947 1.06078 1.26955 1.50814 1.24985 0.94867 0.99336 0.95337 0.86563 0.79462 0.82700 0.78727 1.20209 1.21322 1.20124 1.21106 0.93419 0.89953 1.50383 0.91969 1.19691 0.89974 0.87218 0.96125 1.62296 1.28263 1.02782 1.33027 1.22067 0.94650 0.89924 1.00670 1.22193 0.96104 0.98914 0.89345 1.62246 1.25038 1.03031 1.35697 1.21080 0.95378 0.96637 0.90724 1.19944 0.93304 0.95704 0.97744 1.21500 0.98148 0.94543 0.91211 1.21202 0.93708 1.00168 0.98055 1.20807 0.95515 0.96855 0.88562 1.98467 1.83847 1.95798 1.20026 1.20827 0.91182 1.03422 0.97060 1.43429 1.01494 0.99686 1.00626 1.94576 1.61622 1.34227 1.46953 1.94607 1.66186 1.68226 1.06892 1.21047 0.94665 0.96609 0.93390 1.22372 0.96519 0.88549 1.00095 1.21966 0.95349 0.97335 0.91355 0.92826 0.99085 0.95177 0.95087 0.90771 0.90886 0.93874 0.88907 0.92939 0.82876 0.82579 0.82242 0.93774 0.91521 0.95354 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.14 8.47 -34.44 -0.29 -14.43 16 8 H 0.06 1.70 7.13 -52.48 -0.37 1.33 16 9 C 0.19 4.98 4.72 -4.98 -0.02 4.96 16 10 N -0.54 -11.18 4.70 -235.91 -1.11 -12.29 16 11 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 12 C 0.06 0.79 5.61 -3.77 -0.02 0.77 16 13 N -0.54 -6.52 4.70 -235.91 -1.11 -7.63 16 14 C 0.09 0.76 5.12 -4.97 -0.03 0.74 16 15 C -0.07 -0.55 4.89 -104.62 -0.51 -1.06 16 16 C -0.04 -0.23 9.70 -39.59 -0.38 -0.62 16 17 C -0.11 -0.77 9.83 -39.55 -0.39 -1.16 16 18 C 0.01 0.11 6.32 -39.50 -0.25 -0.14 16 19 Cl -0.01 -0.11 25.94 -51.86 -1.35 -1.45 16 20 C -0.04 -0.45 6.86 -79.91 -0.55 -1.00 16 21 N 0.03 0.37 4.45 33.98 0.15 0.52 16 22 O -0.16 -2.30 18.45 -29.46 -0.54 -2.85 16 23 O -0.14 -1.94 16.02 -29.46 -0.47 -2.41 16 24 C -0.04 -0.37 7.43 -39.59 -0.29 -0.66 16 25 C 0.05 0.76 5.25 -3.77 -0.02 0.74 16 26 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.59 7.97 -51.93 -0.41 0.18 16 35 H 0.05 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.16 1.54 7.54 -52.49 -0.40 1.14 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.82 6.79 -51.93 -0.35 1.47 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -31.34 361.83 -11.77 -43.11 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.61 Total: -5.04 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.90 Total: -8.19 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -1.33 Total: -45.17 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -1.02 Total: -5.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.35 Total: -1.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.34 -11.77 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760944041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.815 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds