Wall clock time and date at job start Tue Mar 31 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00038 * 2 1 4 4 H 1.48504 * 109.47114 * 240.00310 * 3 2 1 5 5 H 1.48495 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46951 * 120.00304 * 3 2 1 7 7 C 1.37877 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00447 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47629 * 179.97438 * 9 7 2 11 11 C 1.46952 * 111.00298 * 169.99684 * 10 9 7 12 12 C 1.53053 * 109.36401 * 183.18479 * 11 10 9 13 13 N 1.46951 * 109.36787 * 301.60310 * 12 11 10 14 14 C 1.46903 * 111.00066 * 183.18426 * 13 12 11 15 15 C 1.50702 * 109.47023 * 170.00057 * 14 13 12 16 16 C 1.38269 * 119.98726 * 270.23564 * 15 14 13 17 17 C 1.38184 * 120.01333 * 180.27607 * 16 15 14 18 18 C 1.38378 * 119.98682 * 359.74544 * 17 16 15 19 19 Cl 1.73597 * 120.01243 * 180.02562 * 18 17 16 20 20 C 1.38325 * 119.97237 * 0.02562 * 18 17 16 21 21 N 1.48025 * 120.00578 * 180.02562 * 20 18 17 22 22 O 1.21803 * 119.99889 * 179.97438 * 21 20 18 23 23 O 1.21799 * 119.99933 * 359.97111 * 21 20 18 24 24 C 1.38215 * 119.98704 * 89.99934 * 15 14 13 25 25 C 1.46958 * 110.87997 * 59.31965 * 13 12 11 26 26 C 1.46960 * 110.99825 * 293.80153 * 10 9 7 27 27 H 0.96998 * 119.99881 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47282 * 59.99474 * 9 7 2 29 29 H 1.09003 * 109.46949 * 300.00061 * 9 7 2 30 30 H 1.09003 * 109.48600 * 63.22266 * 11 10 9 31 31 H 1.08992 * 109.48950 * 303.15711 * 11 10 9 32 32 H 1.08997 * 109.49082 * 181.63102 * 12 11 10 33 33 H 1.09006 * 109.48263 * 61.56743 * 12 11 10 34 34 H 1.08998 * 109.46707 * 50.00061 * 14 13 12 35 35 H 1.08998 * 109.47109 * 289.99694 * 14 13 12 36 36 H 1.08000 * 119.98952 * 0.02562 * 16 15 14 37 37 H 1.08002 * 120.00690 * 179.72031 * 17 16 15 38 38 H 1.08002 * 119.99636 * 0.02562 * 24 15 14 39 39 H 1.08998 * 109.49223 * 60.64309 * 25 13 12 40 40 H 1.09001 * 109.49152 * 180.71616 * 25 13 12 41 41 H 1.09002 * 109.48540 * 296.77789 * 26 10 9 42 42 H 1.08998 * 109.48770 * 56.81915 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0018 11 6 1.5210 -4.8941 0.2365 12 6 2.5566 -6.0190 0.3067 13 7 3.3186 -6.0590 -0.9491 14 6 4.2732 -7.1755 -0.9504 15 6 4.8562 -7.3365 -2.3307 16 6 4.2366 -8.1621 -3.2506 17 6 4.7738 -8.3146 -4.5146 18 6 5.9291 -7.6366 -4.8614 19 17 6.6042 -7.8271 -6.4494 20 6 6.5459 -6.8070 -3.9423 21 7 7.7815 -6.0810 -4.3127 22 8 8.3243 -5.3502 -3.5034 23 8 8.2555 -6.2144 -5.4267 24 6 6.0072 -6.6549 -2.6783 25 6 4.0032 -4.7806 -1.1873 26 6 2.9676 -3.6558 -1.2577 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 0.8248 -5.0913 -0.5787 31 1 0.9742 -4.8439 1.1780 32 1 2.0488 -6.9721 0.4545 33 1 3.2364 -5.8358 1.1389 34 1 3.7594 -8.0930 -0.6637 35 1 5.0737 -6.9699 -0.2397 36 1 3.3348 -8.6912 -2.9798 37 1 4.2922 -8.9631 -5.2315 38 1 6.4889 -6.0074 -1.9605 39 1 4.6993 -4.5834 -0.3721 40 1 4.5500 -4.8307 -2.1289 41 1 2.2878 -3.8388 -2.0898 42 1 3.4751 -2.7025 -1.4056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760944041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:01 Heat of formation + Delta-G solvation = 20.735902 kcal Electronic energy + Delta-G solvation = -26874.039324 eV Core-core repulsion = 22882.904785 eV Total energy + Delta-G solvation = -3991.134539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.31764 -41.07992 -39.87772 -38.03857 -37.59762 -36.73101 -34.70603 -33.29475 -32.80768 -31.80068 -29.97092 -27.87300 -27.52742 -25.49858 -24.57112 -23.90090 -23.32710 -22.54787 -20.69460 -20.00576 -19.75014 -18.70164 -18.50880 -17.96268 -17.35958 -17.08558 -16.49637 -16.19688 -15.85879 -15.71410 -15.51063 -15.19092 -15.13230 -14.67682 -14.53105 -14.00960 -13.60676 -13.36900 -13.34567 -13.18875 -12.93624 -12.75993 -12.71340 -12.69514 -12.56824 -12.38344 -12.30751 -12.25105 -12.12712 -11.92439 -11.54525 -11.52323 -11.21552 -10.72517 -10.63674 -10.14657 -9.39356 -9.04604 -8.23312 -6.33505 -1.36947 -0.34772 0.17171 0.19695 0.73070 1.39318 1.41823 1.49810 2.01560 2.37889 2.94804 3.08508 3.09453 3.28221 3.33201 3.62176 3.74781 3.80495 3.95352 4.17933 4.21457 4.26560 4.35528 4.40957 4.49150 4.58675 4.64317 4.68769 4.74934 4.85376 4.95099 5.00811 5.02411 5.03702 5.13170 5.19861 5.27322 5.31522 5.61081 5.92217 5.99595 6.04133 6.30719 6.40616 6.61984 6.82233 7.36414 8.87543 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002754 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.774758 B =10163.022684 C =11375.293154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.210 3.790 10 N -0.545 5.545 11 C 0.051 3.949 12 C 0.072 3.928 13 N -0.539 5.539 14 C 0.092 3.908 15 C -0.069 4.069 16 C -0.016 4.016 17 C -0.102 4.102 18 C 0.002 3.998 19 Cl -0.018 7.018 20 C -0.062 4.062 21 N 0.028 4.972 22 O -0.195 6.195 23 O -0.153 6.153 24 C -0.044 4.044 25 C 0.068 3.932 26 C 0.071 3.929 27 H 0.265 0.735 28 H -0.041 1.041 29 H 0.006 0.994 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.043 0.957 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.191 0.809 37 H 0.188 0.812 38 H 0.154 0.846 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.014 0.986 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -24.513 -6.837 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.270 5.270 11 C -0.078 4.078 12 C -0.055 4.055 13 N -0.264 5.264 14 C -0.035 4.035 15 C -0.070 4.070 16 C -0.034 4.034 17 C -0.120 4.120 18 C -0.027 4.027 19 Cl 0.011 6.989 20 C -0.146 4.146 21 N 0.543 4.457 22 O -0.402 6.402 23 O -0.372 6.372 24 C -0.064 4.064 25 C -0.060 4.060 26 C -0.058 4.058 27 H 0.074 0.926 28 H -0.024 1.024 29 H 0.024 0.976 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.208 0.792 37 H 0.205 0.795 38 H 0.172 0.828 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.032 0.968 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.482 -24.728 -6.736 26.996 hybrid contribution 0.627 1.820 -0.397 1.965 sum 9.109 -22.909 -7.133 25.664 Atomic orbital electron populations 1.70070 1.07659 1.28002 1.51637 1.25885 0.95735 1.03102 0.94757 0.85483 0.78235 0.78114 0.79104 1.19482 1.20670 1.19218 1.21428 0.93514 0.91228 1.50253 0.92136 1.19318 0.90020 0.88921 0.93331 1.62212 1.27422 1.03405 1.33991 1.22219 0.95967 0.89391 1.00189 1.22133 0.95165 0.98692 0.89506 1.62184 1.25963 1.02726 1.35508 1.21213 0.95122 0.96261 0.90865 1.20032 0.92782 0.95977 0.98251 1.21952 0.98359 0.92922 0.90189 1.21623 0.92246 0.99318 0.98861 1.21098 0.96365 0.97119 0.88069 1.98466 1.84157 1.95771 1.20461 1.20988 0.90614 1.04718 0.98314 1.43801 1.02169 0.99482 1.00252 1.94556 1.62886 1.35662 1.47111 1.94577 1.66962 1.68403 1.07230 1.21132 0.95427 0.96992 0.92829 1.22104 0.94793 0.88470 1.00681 1.21911 0.95691 0.98216 0.89996 0.92618 1.02365 0.97589 0.95885 0.90903 0.86761 0.93873 0.85248 0.92374 0.79216 0.79451 0.82809 0.94018 0.90480 0.96815 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.53 -30.05 8.47 25.60 0.22 -29.84 16 8 H 0.06 3.40 7.13 -2.91 -0.02 3.38 16 9 C 0.21 11.25 4.72 85.56 0.40 11.66 16 10 N -0.55 -23.10 4.70 -900.29 -4.23 -27.33 16 11 C 0.05 1.67 5.61 86.31 0.48 2.15 16 12 C 0.07 1.60 5.61 86.31 0.48 2.08 16 13 N -0.54 -11.33 4.70 -900.28 -4.23 -15.56 16 14 C 0.09 1.14 5.12 85.56 0.44 1.58 16 15 C -0.07 -0.89 4.89 -19.86 -0.10 -0.99 16 16 C -0.02 -0.13 9.70 22.26 0.22 0.09 16 17 C -0.10 -0.99 9.83 22.29 0.22 -0.77 16 18 C 0.00 0.04 6.32 22.32 0.14 0.18 16 19 Cl -0.02 -0.33 25.94 -2.72 -0.07 -0.40 16 20 C -0.06 -1.33 6.86 36.39 0.25 -1.08 16 21 N 0.03 0.78 4.45 -46.41 -0.21 0.57 16 22 O -0.19 -5.86 18.45 18.88 0.35 -5.51 16 23 O -0.15 -4.35 16.02 18.89 0.30 -4.05 16 24 C -0.04 -0.79 7.43 22.26 0.17 -0.63 16 25 C 0.07 1.88 5.25 86.31 0.45 2.33 16 26 C 0.07 2.72 5.43 86.31 0.47 3.19 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 29 H 0.01 0.34 8.03 -2.39 -0.02 0.33 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.11 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.13 0.77 7.97 -2.39 -0.02 0.75 16 35 H 0.06 0.72 8.06 -2.39 -0.02 0.71 16 36 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.15 2.88 7.54 -2.91 -0.02 2.86 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.99 5.95 -2.39 -0.01 1.98 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 2.60 6.79 -2.39 -0.02 2.58 16 Total: -1.00 -72.46 361.83 -0.44 -72.90 By element: Atomic # 1 Polarization: -2.86 SS G_CDS: 1.04 Total: -1.82 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.30 Total: -9.39 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -8.39 Total: -98.46 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.65 Total: -9.56 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.07 Total: -0.40 kcal Total: -72.46 -0.44 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760944041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.631 kcal (2) G-P(sol) polarization free energy of solvation -72.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds