Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00367 * 2 1 4 4 H 1.48499 * 109.47327 * 269.99959 * 3 2 1 5 5 H 1.48505 * 109.46769 * 29.99816 * 3 2 1 6 6 H 1.48502 * 109.47429 * 149.99648 * 3 2 1 7 7 C 1.38820 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99426 * 163.07653 * 7 2 1 9 9 N 1.36934 * 120.00029 * 343.07365 * 7 2 1 10 10 C 1.46923 * 120.63270 * 331.85002 * 9 7 2 11 11 C 1.53189 * 108.77344 * 233.58748 * 10 9 7 12 12 C 1.53035 * 109.31438 * 305.36072 * 11 10 9 13 13 N 1.46906 * 109.46292 * 181.38515 * 12 11 10 14 14 C 1.46900 * 110.99725 * 154.97487 * 13 12 11 15 15 C 1.50697 * 109.46873 * 180.02562 * 14 13 12 16 16 C 1.38264 * 119.99854 * 270.02047 * 15 14 13 17 17 C 1.38219 * 120.03038 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.01341 * 359.72694 * 17 16 15 19 19 N 1.48013 * 120.00756 * 180.29448 * 18 17 16 20 20 O 1.21799 * 120.00114 * 0.23751 * 19 18 17 21 21 O 1.21807 * 119.99916 * 180.23253 * 19 18 17 22 22 C 1.38339 * 119.98481 * 0.53289 * 18 17 16 23 23 Cl 1.73594 * 120.00972 * 179.74068 * 22 18 17 24 24 C 1.38197 * 119.99361 * 89.99817 * 15 14 13 25 25 C 1.53042 * 109.52579 * 61.37413 * 12 11 10 26 26 C 1.46926 * 120.62641 * 151.82563 * 9 7 2 27 27 H 0.97003 * 119.99965 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.58847 * 113.80010 * 10 9 7 29 29 H 1.09003 * 109.70375 * 353.44376 * 10 9 7 30 30 H 1.09000 * 109.49712 * 185.41084 * 11 10 9 31 31 H 1.08999 * 109.50185 * 65.31550 * 11 10 9 32 32 H 1.09000 * 109.46312 * 301.36533 * 12 11 10 33 33 H 1.00896 * 111.00079 * 278.93289 * 13 12 11 34 34 H 1.09000 * 109.47283 * 60.00367 * 14 13 12 35 35 H 1.08997 * 109.47421 * 300.00040 * 14 13 12 36 36 H 1.08006 * 119.97882 * 0.03064 * 16 15 14 37 37 H 1.08000 * 119.98864 * 180.02562 * 17 16 15 38 38 H 1.08001 * 120.00782 * 0.02562 * 24 15 14 39 39 H 1.09008 * 109.49847 * 58.58095 * 25 12 11 40 40 H 1.09000 * 109.50151 * 178.67401 * 25 12 11 41 41 H 1.08996 * 109.58827 * 246.19786 * 26 9 7 42 42 H 1.08997 * 109.58864 * 6.48472 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 0.2259 -2.3410 1.2658 11 6 0.4972 -3.3210 2.4115 12 6 0.8117 -4.7022 1.8324 13 7 1.0399 -5.6525 2.9292 14 6 0.7590 -7.0290 2.5000 15 6 1.0031 -7.9731 3.6490 16 6 2.2550 -8.5308 3.8315 17 6 2.4797 -9.3964 4.8854 18 6 1.4542 -9.7005 5.7611 19 7 1.6967 -10.6223 6.8935 20 8 2.8011 -11.1096 7.0564 21 8 0.7919 -10.8935 7.6626 22 6 0.2000 -9.1470 5.5760 23 17 -1.0900 -9.5337 6.6713 24 6 -0.0244 -8.2808 4.5205 25 6 2.0673 -4.6179 0.9614 26 6 1.8137 -3.6528 -0.2010 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6771 -2.6411 0.7344 29 1 0.0965 -1.3360 1.6675 30 1 -0.3834 -3.3864 3.0506 31 1 1.3469 -2.9700 2.9971 32 1 -0.0283 -5.0418 1.2265 33 1 1.9788 -5.5704 3.2893 34 1 1.4135 -7.2911 1.6687 35 1 -0.2807 -7.1055 2.1820 36 1 3.0579 -8.2893 3.1506 37 1 3.4580 -9.8313 5.0276 38 1 -1.0023 -7.8452 4.3779 39 1 2.9021 -4.2545 1.5608 40 1 2.3044 -5.6064 0.5681 41 1 1.0401 -4.0599 -0.8520 42 1 2.7331 -3.5125 -0.7694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761520315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = 28.084265 kcal Electronic energy + Delta-G solvation = -26226.500301 eV Core-core repulsion = 22235.684411 eV Total energy + Delta-G solvation = -3990.815890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.29260 -40.87659 -39.55773 -38.00252 -37.58809 -36.76552 -34.53134 -33.10209 -32.29529 -31.67011 -30.80908 -28.40068 -26.58790 -25.17399 -24.37479 -23.75166 -23.04517 -22.60114 -20.87989 -20.51197 -19.78417 -18.79892 -18.68057 -17.42570 -17.13697 -16.87759 -16.23178 -16.13697 -15.70857 -15.41268 -15.29349 -15.08647 -14.83762 -14.69317 -14.58236 -13.92291 -13.55072 -13.30547 -13.18494 -13.04772 -12.91306 -12.78925 -12.67149 -12.56495 -12.54187 -12.43046 -12.28159 -11.99145 -11.92500 -11.77289 -11.52761 -11.40921 -11.19078 -10.62118 -10.53898 -10.23294 -9.30404 -8.66829 -7.87584 -5.32175 -1.38783 -0.26632 0.14839 0.20065 0.73351 1.45795 1.48029 1.56878 2.02749 2.51227 3.08611 3.13415 3.28831 3.47456 3.64716 3.69599 3.73493 3.85599 3.99567 4.16141 4.27375 4.40977 4.43785 4.54352 4.60037 4.64948 4.72038 4.77247 4.90094 5.01414 5.04577 5.07545 5.11853 5.19975 5.29017 5.30818 5.39245 5.55005 5.66424 5.76780 6.04802 6.40226 6.43729 6.46033 7.16190 7.88576 8.38582 9.18658 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.002003 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.956410 B =13975.950143 C =14350.397646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.112 4.112 12 C 0.110 3.890 13 N -0.681 5.681 14 C 0.089 3.911 15 C -0.004 4.004 16 C -0.096 4.096 17 C -0.038 4.038 18 C -0.064 4.064 19 N 0.029 4.971 20 O -0.174 6.174 21 O -0.170 6.170 22 C 0.004 3.996 23 Cl -0.020 7.020 24 C -0.091 4.091 25 C -0.145 4.145 26 C 0.141 3.859 27 H 0.249 0.751 28 H -0.004 1.004 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.347 0.653 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.184 0.816 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.014 0.986 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -21.217 7.957 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.050 3.950 11 C -0.152 4.152 12 C 0.000 4.000 13 N -0.312 5.312 14 C -0.040 4.040 15 C -0.006 4.006 16 C -0.115 4.115 17 C -0.057 4.057 18 C -0.149 4.149 19 N 0.544 4.456 20 O -0.387 6.387 21 O -0.384 6.384 22 C -0.025 4.025 23 Cl 0.009 6.991 24 C -0.111 4.111 25 C -0.185 4.185 26 C 0.015 3.985 27 H 0.058 0.942 28 H 0.014 0.986 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.201 0.799 37 H 0.195 0.805 38 H 0.185 0.815 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.787 -20.610 7.805 22.111 hybrid contribution 0.683 0.740 -0.109 1.013 sum 2.469 -19.870 7.696 21.451 Atomic orbital electron populations 1.70171 1.06630 1.25786 1.55490 1.25776 0.96014 1.01451 1.01446 0.85343 0.78130 0.79827 0.77550 1.21174 1.22013 1.19572 1.19482 0.92768 0.86153 1.40777 0.91720 1.44338 1.35945 1.02406 1.50833 1.20585 0.87694 0.97620 0.89083 1.21931 1.00648 0.94870 0.97702 1.21259 0.96957 0.91506 0.90247 1.60641 1.33450 1.03039 1.34064 1.21123 1.03912 0.86147 0.92771 1.20379 0.92512 0.93199 0.94471 1.21602 0.97947 0.94793 0.97155 1.21337 0.98615 0.94834 0.90892 1.21122 0.97189 1.02594 0.93954 1.43761 1.00195 1.00016 1.01627 1.94511 1.10911 1.54167 1.79112 1.94618 1.37150 1.65031 1.41616 1.20939 0.88487 0.98033 0.95010 1.98467 1.47093 1.92429 1.61067 1.21285 1.02601 0.95541 0.91647 1.22537 0.98348 0.99515 0.98144 1.21011 0.97172 0.85997 0.94279 0.94166 0.98629 0.93241 0.91825 0.93544 0.90896 0.83396 0.90890 0.88652 0.79854 0.80483 0.81467 0.92411 0.89674 0.96798 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 11.19 21.65 0.24 -54.18 16 2 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 3 Si 0.96 44.01 29.59 68.60 2.03 46.04 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.26 -13.95 9.58 84.04 0.81 -13.14 16 8 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 9 N -0.61 -29.08 2.99 -699.11 -2.09 -31.17 16 10 C 0.18 8.09 5.30 86.36 0.46 8.54 16 11 C -0.11 -3.80 5.69 30.67 0.17 -3.63 16 12 C 0.11 2.78 2.43 44.94 0.11 2.89 16 13 N -0.68 -12.17 6.24 -495.44 -3.09 -15.26 16 14 C 0.09 1.03 5.61 85.56 0.48 1.51 16 15 C 0.00 -0.05 5.39 -19.87 -0.11 -0.15 16 16 C -0.10 -0.79 9.70 22.27 0.22 -0.57 16 17 C -0.04 -0.44 9.55 22.26 0.21 -0.23 16 18 C -0.06 -1.16 6.86 36.40 0.25 -0.91 16 19 N 0.03 0.68 4.45 -46.41 -0.21 0.47 16 20 O -0.17 -4.17 18.45 18.89 0.35 -3.82 16 21 O -0.17 -4.43 16.02 18.88 0.30 -4.13 16 22 C 0.00 0.07 6.32 22.33 0.14 0.21 16 23 Cl -0.02 -0.39 25.94 -2.72 -0.07 -0.46 16 24 C -0.09 -1.23 9.49 22.29 0.21 -1.02 16 25 C -0.14 -3.77 5.33 30.67 0.16 -3.60 16 26 C 0.14 5.23 6.52 86.36 0.56 5.79 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.05 2.64 6.07 -2.39 -0.01 2.63 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.90 7.80 -2.39 -0.02 1.88 16 33 H 0.35 5.67 8.47 -89.70 -0.76 4.91 16 34 H 0.07 0.63 7.36 -2.39 -0.02 0.62 16 35 H 0.10 1.11 8.00 -2.39 -0.02 1.09 16 36 H 0.18 0.41 8.06 -2.91 -0.02 0.38 16 37 H 0.18 1.48 7.61 -2.91 -0.02 1.45 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.08 1.60 7.42 -2.39 -0.02 1.58 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 Total: -1.00 -66.70 362.56 1.85 -64.85 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 0.29 Total: 4.37 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.09 Total: -6.72 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -5.15 Total: -100.13 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.65 Total: -7.95 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.07 Total: -0.46 kcal Total: -66.70 1.85 -64.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761520315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.933 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds